mRNA_S-ischiensis_contig82.19934.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19934.1
Unique NamemRNA_S-ischiensis_contig82.19934.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:549487..551053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.2424607-CDS-S-ischiensis_contig82:549487..5495411622817320.2424607-CDS-S-ischiensis_contig82:549487..549541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 549488..549541 -
1695741024.2539463-CDS-S-ischiensis_contig82:549487..5495411695741024.2539463-CDS-S-ischiensis_contig82:549487..549541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 549488..549541 -
1622817320.256631-CDS-S-ischiensis_contig82:550861..5510531622817320.256631-CDS-S-ischiensis_contig82:550861..551053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 550862..551053 -
1695741024.267841-CDS-S-ischiensis_contig82:550861..5510531695741024.267841-CDS-S-ischiensis_contig82:550861..551053Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 550862..551053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19934.1prot_S-ischiensis_contig82.19934.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 549488..551053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19934.1

>prot_S-ischiensis_contig82.19934.1 ID=prot_S-ischiensis_contig82.19934.1|Name=mRNA_S-ischiensis_contig82.19934.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=82bp
RALVKASPAGKRPGSGPGMQGWDRQPQQQHPSQQQQQQQRQQRESHGYPQ
RQAQSRIEDAYEQQVWREVAMQEQQIGQLQEQ
back to top

mRNA from alignment at S-ischiensis_contig82:549487..551053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19934.1 ID=mRNA_S-ischiensis_contig82.19934.1|Name=mRNA_S-ischiensis_contig82.19934.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1567bp|location=Sequence derived from alignment at S-ischiensis_contig82:549487..551053- (Schizocladia ischiensis KU_0333)
CGGGCGCTCGTCAAGGCCAGCCCCGCAGGCAAGCGCCCAGGGTCGGGCCC
GGGGATGCAGGGATGGGACCGGCAGCCACAACAGCAGCACCCGTCGCAGC
AGCAGCAACAACAGCAGCGGCAACAGCGGGAATCGCACGGGTACCCACAA
CGCCAGGCACAATCACGAATTGAGGACGCCTATGAGCAGCAGGTGGGTGT
TGCGTAGATCTCACAAATCCAAAGTACTTGTACTTGTGCACCGCAATCAC
TGCCCGCTCCCAGTACACAACTTCTTCCTCGGCTATGTCAACGTGTGCAT
ACTCGCACGGGTACGTCCCGCTACATCCGCAACTTTGAAAATAACACCCC
CCCGTCGCCCCGTGTTCTTCGTTCTTTTGCCCGGCGAGGGAACGAAGGGC
TTTCGATGAGGTCCCATATTTGGGACGGTTCCCAGAACTTGCTTGTGTAG
ATTCACTTCAAAGTACTTATCTAGTTAAACCTCAACCGCCTTACCAGGCA
GTGTCAACTACAGTAGTGCATATCCCATACGAAGTATAGGTATAGATTGT
CGCTACCCGAGAGCTGCATAGTTAGGCGGGCTCTGCCGGGGCGCCAGCGG
GCCCAGTCTGAGGCTGGTTGGCATTGCTACGTCTGCGCAGGTGGGGGCCG
CAAGCGGCGGCTGCCTCTGGGGTCGTGTGCCCCGAGCTGTGTCCCGGGCA
TGCACGTTGCACAGGGTGCGCCACGAAAGGGTGCAGTAGCTACAGTGCTC
CGTCTTCCAGTAGCTGAAGTACAGTACGTGAAGGCTTTTAAAATTATGGT
TCGCTCGGCTTACTGTAGTGCGTACTGGTGCTTCGTACTACTATTGCACA
GCACTCCGAGGTAATAATGTAGAAGTACTTCAAAGTAGACTAGTAGTACT
AGAGATTAAAGGCAAGCGAGGCGTGGCCCACGTCAGTAGTTCACCTCGAC
AGTTGGCCTTTCTATACAGTATTACTGGTACTGCACTACAGGACCAGTAC
TGTACTCGTAGTAAATTTGCACAAACACAGCAAGGCGCGGCTCACGTCAG
TATTGACCTCAACAGTGGGCCTTACTCTTCTGACCAAGCAGAGAGGCAGT
GCAGAGGGGCACTGCAGCGGTAATATGCGGCTATACTCGAGCAGAATTTG
AAGTAGGTCCGGAAGTACAGTATGCTCGAAGTACATAAAAAAGGTGTGCT
ACTAGAGTACAGTACTTGAAGGTTGTACCCATGAATCATAGTGGCTAAGT
TCCCAAAGTATGAATAGTGCAGGCCACGGTACTGCCAGCAGAGTACTGTA
CTTGGAGTTAAAATACTCATGTACTCGTACAGCAGAGCAAGCACAGTATG
TACTACGGCGTGGCGCGTACGAGTACAGTACAGTTACTGTACTGCTATTT
GGTTGGCAGTGTGGTATGGGCCTGGTACAGTAGAGGTCATCCTCGGAGTC
AAGGTGCACAATAGCCCTCGCGCTTATATGGCATACCTCGTGCCCCCCCT
CCCTCTCTGCAGGTGTGGCGGGAGGTGGCCATGCAAGAGCAGCAGATTGG
GCAGCTGCAGGAGCAGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig82:549487..551053-

>mRNA_S-ischiensis_contig82.19934.1 ID=mRNA_S-ischiensis_contig82.19934.1|Name=mRNA_S-ischiensis_contig82.19934.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=492bp|location=Sequence derived from alignment at S-ischiensis_contig82:549487..551053- (Schizocladia ischiensis KU_0333)
CGGGCGCTCGTCAAGGCCAGCCCCGCAGGCAAGCGCCCAGGGTCGGGCCC
GGGGATGCAGGGATGGGACCGGCAGCCACAACAGCAGCACCCGTCGCAGC
AGCAGCAACAACAGCAGCGGCAACAGCGGGAATCGCACGGGTACCCACAA
CGCCAGGCACAATCACGAATTGAGGACGCCTATGAGCAGCAGCGGGCGCT
CGTCAAGGCCAGCCCCGCAGGCAAGCGCCCAGGGTCGGGCCCGGGGATGC
AGGGATGGGACCGGCAGCCACAACAGCAGCACCCGTCGCAGCAGCAGCAA
CAACAGCAGCGGCAACAGCGGGAATCGCACGGGTACCCACAACGCCAGGC
ACAATCACGAATTGAGGACGCCTATGAGCAGCAGGTGTGGCGGGAGGTGG
CCATGCAAGAGCAGCAGATTGGGCAGCTGCAGGAGCAGGTGTGGCGGGAG
GTGGCCATGCAAGAGCAGCAGATTGGGCAGCTGCAGGAGCAG
back to top