mRNA_S-ischiensis_contig82.19929.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19929.1
Unique NamemRNA_S-ischiensis_contig82.19929.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:455492..457240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size897
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19929.1prot_S-ischiensis_contig82.19929.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 455710..457065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.172248-UTR-S-ischiensis_contig82:455491..4557091622817320.172248-UTR-S-ischiensis_contig82:455491..455709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 455492..455709 -
1695741024.212801-UTR-S-ischiensis_contig82:455491..4557091695741024.212801-UTR-S-ischiensis_contig82:455491..455709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 455492..455709 -
1622817320.206415-UTR-S-ischiensis_contig82:457065..4572401622817320.206415-UTR-S-ischiensis_contig82:457065..457240Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 457066..457240 -
1695741024.2446575-UTR-S-ischiensis_contig82:457065..4572401695741024.2446575-UTR-S-ischiensis_contig82:457065..457240Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 457066..457240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.1846926-CDS-S-ischiensis_contig82:455709..4560431622817320.1846926-CDS-S-ischiensis_contig82:455709..456043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 455710..456043 -
1695741024.2253458-CDS-S-ischiensis_contig82:455709..4560431695741024.2253458-CDS-S-ischiensis_contig82:455709..456043Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 455710..456043 -
1622817320.1956043-CDS-S-ischiensis_contig82:456895..4570651622817320.1956043-CDS-S-ischiensis_contig82:456895..457065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 456896..457065 -
1695741024.2355907-CDS-S-ischiensis_contig82:456895..4570651695741024.2355907-CDS-S-ischiensis_contig82:456895..457065Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 456896..457065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19929.1

>prot_S-ischiensis_contig82.19929.1 ID=prot_S-ischiensis_contig82.19929.1|Name=mRNA_S-ischiensis_contig82.19929.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
MGPSPPLWSPVAGTDDGTGCCHDGSGSSGGGGGGGCGGGGGGGGPVVIMA
YKRRHESRETAFFTELGCSFRIWRVTPKTVHNCTATVAALNRNPPSEPEP
ETSGPSSGRISRPKSPPGPSDGEAMPPQSPGPGLGPQAVVRGMGWDPDVH
ILVAVAREGGQWWNVHQ*
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mRNA from alignment at S-ischiensis_contig82:455492..457240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19929.1 ID=mRNA_S-ischiensis_contig82.19929.1|Name=mRNA_S-ischiensis_contig82.19929.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1749bp|location=Sequence derived from alignment at S-ischiensis_contig82:455492..457240- (Schizocladia ischiensis KU_0333)
GGGAGAGCGAGAGCAAGGGGGAGCGACACGGGGGCTCGAGGAAGACACCG
TCGCAGCTGCAGGATCCGCTGGCGCTGCCGCCGGGAAAGGGTGTGCAGGA
GAGGGAGCGGATGCGCCCGGATGGGGGGGCACCCCAGGACAGGCTCTGGG
CCCGGGAAATCGTGGGCCCGGGGCTATGGGCCCAAGCCCACCCCTGTGGT
CGCCCGTTGCCGGCACAGATGACGGCACAGGATGTTGTCACGACGGCAGC
GGCAGCAGCGGCGGCGGGGGCGGCGGCGGCTGCGGCGGTGGCGGCGGCGG
CGGCGGCCCTGTGGTGATTATGGCGTACAAGCGTCGACATGAGAGGTGGG
GTGTCATGTCAAATCGCATGCCATCACAATAGTTAACCCTTTTACCCCCG
CTAACTTGAACTTCCACACTGAAACCCTATGGTTGTGCGGACCCCAGGGT
TAGAAGGGTTAAAAACGACAGGCGGGGCGAGTGTGGGCCTCTGCGTGAAA
GTGTTTTGGGGGCCGAAAAGGGAAGAGGAAAAGTTGCGCCTGGGGTGGGG
AATGCTTTGATGTGCCCCGAACTTGCTTTGAAGGCGCTGAGTGGAGTACC
GTGGCTCGTGAGGCATTCCAAGTACCATTATCGTCGGAGAGATCTTGCCC
CCCCATGCCATTTTTCGGGAGAACGTTTCTTGCCGAATACCGGTCGTATT
CGCGTGGGAAACTCAGAAAATCTCCCTCAGGACCTGGGGAATATTTTCTA
AGAGTTTTCGGGACAATCCGAGACCTTCGCAGTTAGAGATATTCCCCCGA
AAATTGGCCCGTGGGGGCAAGATCTCTCCAACGATTACGGTATGCACCGT
GTCCGAACTCGGCAGTACTTAGCGCTTCGAAGCTCTTGACCTCGGATGTG
GTGTTGCTGCCATGCTACTATTGCTGTACCGCACAGCATAGGTACTTTGA
AGTACATACATCGAAGTGCTCTGTGCTGTACTTTCTGTGTCCCTGCAGCG
TATTGCCAGCAGCCCAGCTGTCTCTCCCGTCGTCCTCGAAGAGGGTCAAT
ACCTCTCTTCGCCTGCCCCCCCCCCCCCCAAGCACAGCCGCGCGACCGCC
TTAATGTCCGTAGGAGGTTTCATAGCGAGCAATAGTGTACTCTCCCGTCG
TCCTCGAAAAGGGCTACCATTTCTCTCTACCTCCCCCAAAACCACAGCCG
CGAGACGGCCTTCTTCACGGAGCTGGGCTGCTCCTTCCGCATCTGGAGGG
TCACGCCCAAAACGGTACACAACTGCACAGCTACAGTTGCCGCCCTCAAC
CGCAATCCACCGTCGGAGCCCGAGCCCGAGACTTCCGGGCCGAGCTCGGG
AAGAATATCTCGGCCCAAGTCACCACCTGGGCCCAGCGACGGCGAAGCGA
TGCCCCCCCAGAGCCCAGGCCCAGGTCTCGGCCCGCAGGCTGTTGTTCGT
GGGATGGGTTGGGATCCCGACGTGCACATCCTCGTCGCCGTGGCCAGGGA
GGGCGGGCAGTGGTGGAACGTCCATCAGTAGATAGTTGTCGGGCTCGCGG
ATTCCGTGGGTGGCATTGCTAACTAGTTGGACTTAGTGCAGCTCAAACTA
TCGAATATCGACTATCGGCAGATGCGTAGACCAGTATTGTCGATAAATAG
GTTGATGTGCTTACTTGGATATTCTGTCACTGGGGGTGTATGGAGCTCCA
GGAAGGGTAGCAGTGAGCTCAGCAATAGGAGTTGGAACTTAGAACAGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:455492..457240-

>mRNA_S-ischiensis_contig82.19929.1 ID=mRNA_S-ischiensis_contig82.19929.1|Name=mRNA_S-ischiensis_contig82.19929.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig82:455492..457240- (Schizocladia ischiensis KU_0333)
ATGGGCCCAAGCCCACCCCTGTGGTCGCCCGTTGCCGGCACAGATGACGG
CACAGGATGTTGTCACGACGGCAGCGGCAGCAGCGGCGGCGGGGGCGGCG
GCGGCTGCGGCGGTGGCGGCGGCGGCGGCGGCCCTGTGGTGATTATGGCG
TACAAGCGTCGACATGAGAGATGGGCCCAAGCCCACCCCTGTGGTCGCCC
GTTGCCGGCACAGATGACGGCACAGGATGTTGTCACGACGGCAGCGGCAG
CAGCGGCGGCGGGGGCGGCGGCGGCTGCGGCGGTGGCGGCGGCGGCGGCG
GCCCTGTGGTGATTATGGCGTACAAGCGTCGACATGAGAGCCGCGAGACG
GCCTTCTTCACGGAGCTGGGCTGCTCCTTCCGCATCTGGAGGGTCACGCC
CAAAACGGTACACAACTGCACAGCTACAGTTGCCGCCCTCAACCGCAATC
CACCGTCGGAGCCCGAGCCCGAGACTTCCGGGCCGAGCTCGGGAAGAATA
TCTCGGCCCAAGTCACCACCTGGGCCCAGCGACGGCGAAGCGATGCCCCC
CCAGAGCCCAGGCCCAGGTCTCGGCCCGCAGGCTGTTGTTCGTGGGATGG
GTTGGGATCCCGACGTGCACATCCTCGTCGCCGTGGCCAGGGAGGGCGGG
CAGTGGTGGAACGTCCATCAGTAGCCGCGAGACGGCCTTCTTCACGGAGC
TGGGCTGCTCCTTCCGCATCTGGAGGGTCACGCCCAAAACGGTACACAAC
TGCACAGCTACAGTTGCCGCCCTCAACCGCAATCCACCGTCGGAGCCCGA
GCCCGAGACTTCCGGGCCGAGCTCGGGAAGAATATCTCGGCCCAAGTCAC
CACCTGGGCCCAGCGACGGCGAAGCGATGCCCCCCCAGAGCCCAGGCCCA
GGTCTCGGCCCGCAGGCTGTTGTTCGTGGGATGGGTTGGGATCCCGACGT
GCACATCCTCGTCGCCGTGGCCAGGGAGGGCGGGCAGTGGTGGAACGTCC
ATCAGTAG
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