mRNA_S-ischiensis_contig82.19926.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19926.1
Unique NamemRNA_S-ischiensis_contig82.19926.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig82.19926.1 vs. uniprot
Match: D7G3Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.110e-25
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    7 ACFSLVFETG--------SKESVYSWEGVSAIACEEIMWAILTLCKATRDKDMPETVNVSLKEMDATAVYHGLAAKHPLVPQLAWQMRSSRIKRN 267
            A F+L FETG         +ES Y+WEGV+A AC+EI+W +LTL +A ++ D  E VNVSLKE+DATAVYHGLA KHPLVP+LA QMR+    RN
Sbjct:  278 AAFTLTFETGRSSSPTAVGQESSYTWEGVNAAACDEILWGLLTLNRAMQEGDELEPVNVSLKELDATAVYHGLATKHPLVPKLARQMRADERSRN 372
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3Y9_ECTSI1.110e-2558.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:417159..421870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3e-22
Seed eggNOG ortholog2880.D7G3Y9
KEGG koko:K18412,ko:K19983
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
EggNOG free text desc.exocyst localization
EggNOG OGsKOG2148@1,KOG2148@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19926.1prot_S-ischiensis_contig82.19926.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 417159..421870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817322.0272248-CDS-S-ischiensis_contig82:417158..4171991622817322.0272248-CDS-S-ischiensis_contig82:417158..417199Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 417159..417199 +
1695741025.5717018-CDS-S-ischiensis_contig82:417158..4171991695741025.5717018-CDS-S-ischiensis_contig82:417158..417199Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 417159..417199 +
1622817322.038749-CDS-S-ischiensis_contig82:418385..4185121622817322.038749-CDS-S-ischiensis_contig82:418385..418512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 418386..418512 +
1695741025.5866292-CDS-S-ischiensis_contig82:418385..4185121695741025.5866292-CDS-S-ischiensis_contig82:418385..418512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 418386..418512 +
1622817322.0493634-CDS-S-ischiensis_contig82:420907..4210021622817322.0493634-CDS-S-ischiensis_contig82:420907..421002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 420908..421002 +
1695741025.6005452-CDS-S-ischiensis_contig82:420907..4210021695741025.6005452-CDS-S-ischiensis_contig82:420907..421002Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 420908..421002 +
1622817322.0598202-CDS-S-ischiensis_contig82:421788..4218701622817322.0598202-CDS-S-ischiensis_contig82:421788..421870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 421789..421870 +
1695741025.6203563-CDS-S-ischiensis_contig82:421788..4218701695741025.6203563-CDS-S-ischiensis_contig82:421788..421870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 421789..421870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19926.1

>prot_S-ischiensis_contig82.19926.1 ID=prot_S-ischiensis_contig82.19926.1|Name=mRNA_S-ischiensis_contig82.19926.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=115bp
GSACFSLVFETGSKESVYSWEGVSAIACEEIMWAILTLCKATRDKDMPET
VNVSLKEMDATAVYHGLAAKHPLVPQLAWQMRSSRIKRNSISQQGSGGGA
GGGAAAGRGGRDEGG
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mRNA from alignment at S-ischiensis_contig82:417159..421870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19926.1 ID=mRNA_S-ischiensis_contig82.19926.1|Name=mRNA_S-ischiensis_contig82.19926.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4712bp|location=Sequence derived from alignment at S-ischiensis_contig82:417159..421870+ (Schizocladia ischiensis KU_0333)
GGGTCGGCGTGCTTCAGCCTGGTCTTCGAGACGGGGAGCAAGTGAGCCAT
TGATTTTTCGATATTTTAGTGGTATTTTAAGGAGCAACACGGGGTGAGGT
GCGGGCCACGTCACTAGAGACCTCAACAATAGCCCTTCCTTAGCTCGCCA
TGGGAAATTTGTGTGGGGAAGGGGAGGTGGACGGGGAGGAAGAGGGGGCG
GAGGAGGAGGAGGAGGAGGGGGAGGGGTGGGGGGAAGACGAGGGAGTTTT
CAGGCGATTCTTTCTTGGTACTTCGAAGTGTTTTTTTGCATGAAGAGAAA
CGAGCGAGTGAGAAAGAAGAGGTGTTCCTACTTACGCGAGTTCAGGGCCC
CCACCCCCGGAAGCCCGTCTTGTCACCTGCCTTCACTCGCAGGGCAGATG
GAGCAGAAAATGCGGAAAACAAGGGAGGGAAGGGGCGGAAGGGAATAGCA
GTGGCAATTGGACACGCAGAATCGACGCCGACGTCCGAATGCGTTGCGTA
CCTGAGAGTGCACAATGTAGTATTCGTGCGATTTTTTTGTGATTTCAGTT
TTTTTTCTCGTATACAGTAACGGCACCGGTTAAGAAACTCCAGGGTTACG
AGAAGGCTTTTGTCTTAGCTTTTGTTTTCGAGACAAGGCTTTTTTCTTAT
GAAGGCGTTTCTTATTTTGGGCTTTCTTGAAAGGGCACCTTTGGCCGTTT
GCAGGCGAAACCCCTGTACTTCGAAGTGTACCGGCCCTGCATTACACCTC
GTCATGGGAGGCATTTTGCCATTTCTTGTACCGCAGGCGGTATGAAGCCT
TTGGCGTTGCTTAATTTCGGTGCGATTCGAAGGCTTTGTTTCTTCGCAGC
TGTTTCTTAGCAGGCGTCTTATACTGTACTTCTGTGCGGTTTGTCGCTTT
GTTTGCGCGCGCGCGTATACCCCCCCCCCCCCCTTTCCCCCCTTTCGGGA
TTTCGGAATGCAGTCGATAAAAAATACCGTACGTGCTCGTACCTGTCATC
AGGGAGTCGGTCTACTCCTGGGAAGGCGTGTCCGCTATTGCCTGCGAGGA
GATCATGTGGGCCATCCTCATTAGATGTAATTAGGGCAACTAGACCTAAA
ATGGAGGCCAACTAGGCCTTAATTAACCTCGAATTGGGGGGAATTAGGCC
TAAAAATGGAGGCCAATTAGGCCCTAATTAGCCTCTTAAGTGCCAACCCC
GCGTACCGTTCTCGTCATATCTGTCAGGGAGTCGGTCTACTCCTGGGAAG
GCGTGTCCGCTATCGCCTGCGAGGAGATCATGTGGGCCATCCTCACGCTG
TGCAAGGCCACGCGGGACAAGGACATGCCCGAGACCGTCAATGTCAGCCT
GAAGGTGGGGTAACATCAGTGATGGAATATCTTTAGAGGTGTTTTACGCG
AGGGGGGGAGGCAAATCACCCCGTTCCTTACATGCCACCGGCTCGGCTTT
CCAGCTCTAACTCGAGAAGAAATGCGAATGGGCGCGTGAAAAATTGTAGG
TCGTCTGGTCGCATCGTCGTGCACACCTGGGCAAAGTTTCGTGCTGCAGT
TCGAAGTTGTTCCCGAGAAGAGGGTGAGTGGCGGCCGCCGCTCATGTAAG
GGCCCCACCCCCCGCCTCGCATAGAACGGCTCTAAGTAAGCCAATCAACC
TACTGTAAGTATTTATCGGCGGTGCTGATCTATTAAAAAAAATATTTCGA
TGGCATGCGAGTTCCGGGCCCCTATTGTGAGTGGTAGATAAGCGGCGAGT
TCCAGGCCCCGTGCCAAAAGGCTCGTCCCGAAACGGGACTAAAAAAGTAA
AGCATACATCTATCGATAGTTGATATTCGATAGGACATGCCCGAGACCGT
CAACGTCAGCCTCAAGGTGGGATAACTGTAACAGGGTTGGCGCTTCGAGG
TTTATTAGGGCCAAATAGCCTTCATTTTGGTCTAGTTGCCCCTGTTTAGA
TCATGTGGTTCGTCCTCACGCTGTGCAAGGCCACACGGGACAAGGACATG
CCCGAGACCGTCAACGTCAGCCTCAAGGCGGGATAATATCTAAGCAAATC
AACCTATTTATTGACAAGGTGGGATATCACTACCAGTGATGGAATATCTA
AGCTAATCAACCTATTTATCTATCGACAGTGCTGATCCATATATCTATCG
ATAGTTGGTATTCGATAGGTCATGCCCGAGACCGTCAACGTCAGTCTCAA
GGTGGGATAGCACTAGCACTACCAGTGATGGAATGTCTAAGCAAATCAAC
CTATTTATCGACAGTAATGATCTACTACAGTAGTGTTATATATCTATCGA
TGGTCAATATTCGATAGTTTGACCCCCACTAAATCCAAGTAGTCCAAGTA
GCTAGTAATGCCTCAAGGTGAGATAACATACTCCCACTGCCTTAATCGTC
GGAGAGATCGTGCCCCCCCGTGCCAATTTTCTGGAGAACCTTTCTCGCCG
AATACTGGCCGAATTCGCGCCGGAAAACTCCGAATATCTCCCTCAGAACC
GGGGGGAACTTTTCCAAGGGCTTTCGGGACAATCCAGGACCTTCCCGTTC
CCCTTTAATGTTTCTCCCCCCCTCATCCTCAACCTCCTCCATCGCTTCCA
CCTCCCCCTCAAAGGGTTAGCCAATCCCCTCGACTGCTCGAACGGCTCGG
CCAATCCCCTCGACCGCGTCGAACGTCTCAGCCAATGAATGAATCGCAGG
AGATGGATGCGTGTACGCCCTCCCGGGGGCCAAAGGGTTACCGTGAAGGA
CGGTGTATAACGACAACAACCAGGGGGCAAATTTTTCTCGCCGGATCGGT
TTTCGATCGAATTGACAAGCCTGAGAATGAAAGCCTTTCGCCGAGACCGA
TACATCCCGAGGGTTTCCGATTCGATCGAAAACCGATCGGGCGAGAGAAA
ATTGCCCGCCGGTTGTCCCGAAGGGGGTCGTTATATTGTACGCCGTCCTT
TACGGTAACCAATCCCTTGACCACGTGGCCACTTCAAACGTCTCGGCCGA
TCGAATCACAGGAGATGGATGCGACGCCTGTCTACCCCAGGTATTAACTA
CTAGCTACACGGAAACTATAGTGACTTTGTACGTGTGAACACCCCCTCCC
GGGGGTCAAAGGGTTAAACCAATCCCCCTCGACCGTGTCGAACGTCACGG
CCAATCGAATCGAATCGCAGGAGATGGACGCGACGGCAGTCTATTGGCTA
CACGGAAACTACAGTTATTTAGTGCGCGTGAACACCTCCCGAGGGGTTAA
AGGGTTATCCTTTTTACCCCTGGGGCCCGTATGGTCATAGGGTTTTATTT
AGTGTATCAGTCCAATTTCCCAGCGATAGAAGGGGCAACCAATCCCTGAA
ACGTCTCGATTGGCGATTCGAATCGAATCGCAGGAGATGGACGCGGCGGC
TGTCTACCACGGCCTGGCGGCCAAGCACCCAGGTGTTAGCTATTGGCTAC
ACAGAAACTATCGTGAGTTAGCACTCGTAAGCGTGTACACCTCCCGTGGG
TCCAAGGGTTAAACCGCGCCCCGTCATCCCCGTCAAACGTCTCGATTGGC
CAATCGAAATCACAGGAGATTAGCGGCACGGAAACTATAGTGATTTTAGT
ACGCGTGTACACCTCCCGGGGGTAAAAAAGGGTTAAACCAATCCCTCGAC
TGCATCCAACATCTCGGCCAGCCACAATCGCATCCATATCCTGTTGACCA
ATCCCCTCAACCGCGGCGAACGTCTCGGCCAATCGAAATGAAATCGCAGG
AGATGGACGCGACGGCCGTCTACCATGGCCTGGCGGCCAAGCACCCGCTC
GTGCCGCAGCTGGCCTGGCAGATGCGTTCCAGCCGCATCAAGAGGTGAGC
TGTAATTGGATTGTAGACACGCCAGAACTTTGTGTACCTGCTCCGCCTCG
ACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACAATGTGAG
GACATATGTATATACTGTAGCGACGTCGCTCGACCTCGTTGTCTACAATC
TCTGACAACCTCGGGTCCCCCGGTGCTGAAACCAATGCTAAGTAAGTGGG
AAGGCGGGTGCGGGCCCGGGCCGTTTTCGTTCTCGCTCGAGAACCCCTTT
TCCAAGCAAGTACCTGGAACATACAGGGGTGTGTGATTGGTCGCAGGTGT
CGTTGTCTGGCAGTGATGGGATATCGATCAGTCGATAGTTGTGAGGCTCG
ACTGATTTTGTGGGTGGCGTTACTAGCTCCTTCGAAGTTCTTAGATTTCG
TGTGGGTCAAACTATCGAATATCGACTATCGACAATGTACTCAAGTGGTG
CTTGCTGTAGCCCTGAGCCCGTTGACCACGCGCCTCGGTCGAGACGGAGC
AGGGATCGATAGATGTATCGATCAGTACTGTCGATAAATAGGTTGATTTG
CTTAGATATTCCATCACGAGCGCTGGGGGGGGTGTGATTGGTCCAAGGTG
TCCTTGTCTGGCGTGTGACCAGTCGGCGCCAGGGTTGGCACTTACCCCCC
AACTTGTGCCCTTTTAGGCCCTCAATTTGCCGTAAGTAGGGGGAACTTGA
CCTAAAATGCAGGCTAATTAGGCCCGAATTAACCTCTAAGTGCCAACCCT
GGGCCTCGCTGCCCCCTTGCGCGTTCCCAGGAACAGTATTAGCCAGCAGG
GCAGCGGCGGCGGAGCAGGAGGAGGAGCAGCAGCAGGCCGCGGCGGGCGC
GATGAAGGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:417159..421870+

>mRNA_S-ischiensis_contig82.19926.1 ID=mRNA_S-ischiensis_contig82.19926.1|Name=mRNA_S-ischiensis_contig82.19926.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=690bp|location=Sequence derived from alignment at S-ischiensis_contig82:417159..421870+ (Schizocladia ischiensis KU_0333)
GGGTCGGCGTGCTTCAGCCTGGTCTTCGAGACGGGGAGCAAGGGTCGGCG
TGCTTCAGCCTGGTCTTCGAGACGGGGAGCAAGGAGTCGGTCTACTCCTG
GGAAGGCGTGTCCGCTATCGCCTGCGAGGAGATCATGTGGGCCATCCTCA
CGCTGTGCAAGGCCACGCGGGACAAGGACATGCCCGAGACCGTCAATGTC
AGCCTGAAGGGAGTCGGTCTACTCCTGGGAAGGCGTGTCCGCTATCGCCT
GCGAGGAGATCATGTGGGCCATCCTCACGCTGTGCAAGGCCACGCGGGAC
AAGGACATGCCCGAGACCGTCAATGTCAGCCTGAAGGAGATGGACGCGAC
GGCCGTCTACCATGGCCTGGCGGCCAAGCACCCGCTCGTGCCGCAGCTGG
CCTGGCAGATGCGTTCCAGCCGCATCAAGAGGAGATGGACGCGACGGCCG
TCTACCATGGCCTGGCGGCCAAGCACCCGCTCGTGCCGCAGCTGGCCTGG
CAGATGCGTTCCAGCCGCATCAAGAGGAACAGTATTAGCCAGCAGGGCAG
CGGCGGCGGAGCAGGAGGAGGAGCAGCAGCAGGCCGCGGCGGGCGCGATG
AAGGGGGGGAACAGTATTAGCCAGCAGGGCAGCGGCGGCGGAGCAGGAGG
AGGAGCAGCAGCAGGCCGCGGCGGGCGCGATGAAGGGGGG
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