mRNA_S-ischiensis_contig82.19924.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19924.1
Unique NamemRNA_S-ischiensis_contig82.19924.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig82.19924.1 vs. uniprot
Match: D8LAU6_ECTSI (rRNA-processing protein EFG1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU6_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.850e-5
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  250 ELEQGIEDRKVQERERQLALRNHKPRFFDRRAALRKLAQIHKRL 381
            ELE  + +R+ QERER LA++ HK +FFDRR ALR+LAQIH++L
Sbjct:  169 ELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKL 212
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU6_ECTSI3.850e-561.36rRNA-processing protein EFG1 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:399328..402516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size388
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19924.1prot_S-ischiensis_contig82.19924.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 399328..402516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.038457-CDS-S-ischiensis_contig82:399327..3995311622817320.038457-CDS-S-ischiensis_contig82:399327..399531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 399328..399531 +
1695741024.13848-CDS-S-ischiensis_contig82:399327..3995311695741024.13848-CDS-S-ischiensis_contig82:399327..399531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 399328..399531 +
1622817320.052893-CDS-S-ischiensis_contig82:400867..4009421622817320.052893-CDS-S-ischiensis_contig82:400867..400942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 400868..400942 +
1695741024.1491814-CDS-S-ischiensis_contig82:400867..4009421695741024.1491814-CDS-S-ischiensis_contig82:400867..400942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 400868..400942 +
1622817320.0672374-CDS-S-ischiensis_contig82:402408..4025161622817320.0672374-CDS-S-ischiensis_contig82:402408..402516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 402409..402516 +
1695741024.1602464-CDS-S-ischiensis_contig82:402408..4025161695741024.1602464-CDS-S-ischiensis_contig82:402408..402516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 402409..402516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19924.1

>prot_S-ischiensis_contig82.19924.1 ID=prot_S-ischiensis_contig82.19924.1|Name=mRNA_S-ischiensis_contig82.19924.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MPHTNKARRAEEYRGDGYSGGGGRLGAGGWVPKRGMREAEEDQRPAKRPR
RQSAKNQIRSLSRMLAREGISDEQKEELREQVRELEQGIEDRKVQERERQ
LALRNHKPRFFDRRAALRKLAQIHKRLHQ
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mRNA from alignment at S-ischiensis_contig82:399328..402516+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19924.1 ID=mRNA_S-ischiensis_contig82.19924.1|Name=mRNA_S-ischiensis_contig82.19924.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3189bp|location=Sequence derived from alignment at S-ischiensis_contig82:399328..402516+ (Schizocladia ischiensis KU_0333)
ATGCCCCATACGAACAAGGCTCGCAGAGCCGAGGAATACCGCGGAGATGG
ATACAGTGGTGGTGGTGGTCGCTTGGGGGCAGGCGGCTGGGTCCCGAAGA
GGGGAATGCGGGAAGCCGAGGAAGACCAAAGGCCCGCCAAGAGACCCAGG
CGCCAGTCGGCCAAGAACCAGATTCGAAGCCTGTCCAGGATGCTCGCCCG
CGAGGTGAGCCCTAAAATATTGCACGGGGGGCTGGCTGCGGTGACGGGCT
GCGCGGTGACCTTTGAGTTAGTTGAGAGGGACGTGGTCGGTGGGCAGCAA
ACCTGCCCCCTCGTGGTACTTCCCCCTGTTTGTATGACTATTGTAGCTTC
GAAGCGCTTCAGAGTTCAGACGATTGTCCAGCGCCGACTGAAGAGTAGTA
ACCAACCAGCACATGGTGTGCGGCCCAATAAGTGGGCCAGGAATTGCAAC
TTGCCAAGAACGCCAATGCCGTTGCAATACTTCGAAGTACCTCCGATCTG
AGTGCCCTGTCGAGGTCCTGTTCTGGGCCGTGGTCCTAAAGTGATGTGGC
GCTATTTGTGATGTGGTGCCAAGCTACAGTACGTTTGGTGTGATGTGGCG
TGGTTAGTGATGTGGTGCCAAGCTACAGTACGTTTGGTTACATCGCATGA
GATCAAATCACATTCCAGATCACTGTTGAGGTTCTGATTCGGGTAGGGTT
GTGAACTGACAGGGCCTACCAGTTTAACTGCTAACCGGTCTTGTGACATG
TCGGTTGTAACCGGTTGCCGGTAATGGCTAAAGTATTTCCAAAACCAACG
AATAACGGTCATGTCACCCGCTCCGGCTACACGATTGGCCACCGGTCGGT
TAGTAGCTGGCTAAACCAGTTAACTGGTACCGACCGGTAAAAACCGGCAC
CAGTTCACAACCCTAGCTTTGGGACGCGATCCGAACTCGTTTCAGTGACG
TACAAAATGACATGACCGGCACAATGCACATCAGGACATGCTCACCTTCG
TTGCCAACGAGTGCCGGGACGAACGCCTATTGGGCCCGGAGGTCGGCACA
CTACTGTAGTACTCTCCAGGGCGTTTGCCCGGGTTGAACTAGATTATAAT
CCACAAACGCCTCGAGACAATCGGGAGCCTCCGATGCGGGACATATCGGG
CATCGGGCCGAATCTCGGGCCCGGAGACCGGCGCCCGGAACGCCCGCATC
GAAACGTCACAATAGCTGCACGCCAAGCGCTCCCCGAGAATGTCTTATAT
AGATTTACGTTCGACATACGCCTATTCTTCCAAACAACAATAGTGAGGCT
GCACGCCCGACTTTGTCCCCCGGGACAAATGTTTTGTTGCCTGACAAGTA
TGTTGCAACATGCCTGGCAATGAGCAGGGCATGATTATGTATATATATAT
ATGAGCAGGGCATGGTTGTACGTTCGATATATGCCTATTCTTCCAAACTA
CGGTAGTGAGGCTGCACGCCCGACTTTGTCCCCGGGGACAAGTGTTGTTT
TGCCTGACAAGTACGTTGCAAAACGCCTGGCAATGAGCAGGGCATTTCGG
ACGAGCAGAAGGAGGAGCTGCGGGAGCAGGTCCGGGAGCTGGAGCAGGGG
ATTGAGGACCGAAAGGTGTGTGTTGTGTGTGTGTGTGTGCGCGCGCGCAC
GCGTGCGCGTGCATGTGTGCGTGTCTGTGTGTGTGTATGGTGGTAATGGG
ATGTGACACATGTGGAGTACTCATTGGCTTGTCTTGCCGCATACTGCAGT
AGAGCTCTATTGGGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCGTGCC
AAAAGGCTCGTCCCGAAACGGGACTCAACGAAGCCCTTCTTCCCCTCGCA
GGGCAAAATGAAAACAAAACATAAAGAAGGAAAGGGGCGGGGTGATGAGG
AAAGGGAAGAGGCGCAGGGAAGTCTCTTGTGCGCACAGTGGGGCATATGC
GGGTGGGGCAGGCGGGGACGAAGCCGCACACGAACACCGAGATCACGACG
TACCTGGGCGAGTGCGAAAAGAGAAGGCGTGAGCAAGTGCCGCAATATAT
ACCGCGCACGAACCTCGTGACCACACCACGAGAGCCAACCCAATAATACA
AAGCAAACGTCACGATGGTGTGGCCGGCACCAGGACGCATACCCAGCACG
CTATATATATATACTCACTTTTTGCTTGCCGTAGTCCCGTGACCATTGAC
CACGCGCCTCGAACGAGACGGAGCAGACATAACCTCGTGGACTGTGATGT
GCACACAAACACACTGCACAGCAGAGTACCGTAATCGTCGGAGAGATATT
GCCCCCACAGGACAATTTTCGGGGGAATATTTCTCGCCGAATGGGTCCCA
GATTGTCCAATTCACCGAAACATTCCTGCAGGTCCCGAGGGAGATTTTCC
CAGTTTTCCCGCGCGAATCCGACCAGTATTCGGCGAGAAAAGTTGTCCCG
AAAATGGGCATGGGGGGGCAACATCTCTCCGACGATTACGGTAGAGTACA
GTAGTGTAGTTTGACATCGCATCACATCACATCAGCGGTGTGTGCAGTTG
CAGGAGCAGGTCCGGCGGCAGGTGCAGGGGATGGAAGACCGAAAGGCAGT
GATGGAATACCTAAGCAAATCAACCTACTGTAGTTATCGACAGTACTGAT
CTACTCCGTATGTATCGATCGATAATCGATATTCGATAGTTGACCCACAC
TAAATCCAACTACTGTAGTTACTACAGTAGTAGTAACGCCACCCACAGAT
TCAGTCGAGCCCGATAACTATCTGCTGATCGATATTCCATCTTTGGCTCG
GACTTCCGTTGGCTGTGGCACACTCACCCGCTCACTGAACTACCACCACC
GGAAGCGCACTTGTTCGTTGTACCGTCGTCCTCCAAGGATTAAGCCTTGG
CTCGGGACCCGCGTATCCAGGGTTGACACTTAACCCCTAAGTGGTGCCCT
TTTAGGCCCTTAGTTAGAGTTAATTAGGGGTAGTTAAGGAGACCTAAAAT
GAAGGCTAATTGGGCCCTAATTAACCTCTAAGTGCCAACCCTGGTGGTAT
CTGCCCGCCTGTCCCCCTGAACTGCCCGCAGGTGCAGGAGAGGGAGAGGC
AGCTGGCCCTGCGGAACCACAAGCCCCGCTTCTTCGACCGGAGGGCCGCG
CTGAGGAAGCTCGCGCAGATACACAAACGTCTGCACCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:399328..402516+

>mRNA_S-ischiensis_contig82.19924.1 ID=mRNA_S-ischiensis_contig82.19924.1|Name=mRNA_S-ischiensis_contig82.19924.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig82:399328..402516+ (Schizocladia ischiensis KU_0333)
ATGCCCCATACGAACAAGGCTCGCAGAGCCGAGGAATACCGCGGAGATGG
ATACAGTGGTGGTGGTGGTCGCTTGGGGGCAGGCGGCTGGGTCCCGAAGA
GGGGAATGCGGGAAGCCGAGGAAGACCAAAGGCCCGCCAAGAGACCCAGG
CGCCAGTCGGCCAAGAACCAGATTCGAAGCCTGTCCAGGATGCTCGCCCG
CGAGATGCCCCATACGAACAAGGCTCGCAGAGCCGAGGAATACCGCGGAG
ATGGATACAGTGGTGGTGGTGGTCGCTTGGGGGCAGGCGGCTGGGTCCCG
AAGAGGGGAATGCGGGAAGCCGAGGAAGACCAAAGGCCCGCCAAGAGACC
CAGGCGCCAGTCGGCCAAGAACCAGATTCGAAGCCTGTCCAGGATGCTCG
CCCGCGAGGGCATTTCGGACGAGCAGAAGGAGGAGCTGCGGGAGCAGGTC
CGGGAGCTGGAGCAGGGGATTGAGGACCGAAAGGGCATTTCGGACGAGCA
GAAGGAGGAGCTGCGGGAGCAGGTCCGGGAGCTGGAGCAGGGGATTGAGG
ACCGAAAGGTGCAGGAGAGGGAGAGGCAGCTGGCCCTGCGGAACCACAAG
CCCCGCTTCTTCGACCGGAGGGCCGCGCTGAGGAAGCTCGCGCAGATACA
CAAACGTCTGCACCAGGTGCAGGAGAGGGAGAGGCAGCTGGCCCTGCGGA
ACCACAAGCCCCGCTTCTTCGACCGGAGGGCCGCGCTGAGGAAGCTCGCG
CAGATACACAAACGTCTGCACCAG
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