mRNA_S-ischiensis_contig82.19922.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19922.1
Unique NamemRNA_S-ischiensis_contig82.19922.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:372173..373134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size742
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19922.1prot_S-ischiensis_contig82.19922.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 372523..373134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.97136-UTR-S-ischiensis_contig82:372172..3725221622817319.97136-UTR-S-ischiensis_contig82:372172..372522Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 372173..372522 -
1695741024.08634-UTR-S-ischiensis_contig82:372172..3725221695741024.08634-UTR-S-ischiensis_contig82:372172..372522Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 372173..372522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.9830046-CDS-S-ischiensis_contig82:372522..3727291622817319.9830046-CDS-S-ischiensis_contig82:372522..372729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 372523..372729 -
1695741024.1049364-CDS-S-ischiensis_contig82:372522..3727291695741024.1049364-CDS-S-ischiensis_contig82:372522..372729Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 372523..372729 -
1622817319.9966958-CDS-S-ischiensis_contig82:372942..3730691622817319.9966958-CDS-S-ischiensis_contig82:372942..373069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 372943..373069 -
1695741024.1162534-CDS-S-ischiensis_contig82:372942..3730691695741024.1162534-CDS-S-ischiensis_contig82:372942..373069Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 372943..373069 -
1622817320.0073779-CDS-S-ischiensis_contig82:373078..3731341622817320.0073779-CDS-S-ischiensis_contig82:373078..373134Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 373079..373134 -
1695741024.128275-CDS-S-ischiensis_contig82:373078..3731341695741024.128275-CDS-S-ischiensis_contig82:373078..373134Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 373079..373134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19922.1

>prot_S-ischiensis_contig82.19922.1 ID=prot_S-ischiensis_contig82.19922.1|Name=mRNA_S-ischiensis_contig82.19922.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=130bp
ALLSSHLLKGISNVLGDSRERCVLDSPSENLVRSEHLEKILLNCHCTYSR
ASRNYWPILGDGISKVLVNSRCCSERCVLDSVKLVKVLSLVNILNILLNC
YRTYSRASRTYWAILERCLLDSAGQNRVS*
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mRNA from alignment at S-ischiensis_contig82:372173..373134-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19922.1 ID=mRNA_S-ischiensis_contig82.19922.1|Name=mRNA_S-ischiensis_contig82.19922.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=962bp|location=Sequence derived from alignment at S-ischiensis_contig82:372173..373134- (Schizocladia ischiensis KU_0333)
GCTCTATTGTCATCGCACCTGCTCAAGGGCATCTCAAACGTACTGGGCGA
TTCTCGGCGCTGCAGCGAAAGATGCGTGCTTGACAGTCCTAGTGAAAATC
TTGTCCGTAGTGAACATCTTGAGAAAATCTTGCTCAATTGTCATTGCACC
TACTCAAGGGCATCTCGAAACTACTGGCCGATTCTCGGCGATGCAGCGAA
AGATGCCTGCTCGACAGTGCTACTGAAAATCTTGTCCTTTGTGCACATCT
TGAACAGCTTGCTCCATTGTTATCGTACCTACTCAAGGGCATCTCGAAAG
TACTGGGTCATTCTCGAAAGATGCCTGCTCGACAGTGCTAGTGAAGATCT
TGTGCTTAGCGAACCTCTTGAACATCTTGCTCAATTTTTATTGCACCTAC
TCAAGGGCATCTCGAAAGTACTGGTCAATTCTCGGTGCTGCAGCGAAAGA
TGCGTGCTCGACAGTGTTAAGTTAGTGAAAGTCTTGTCCTTAGTGAACAT
CTTGAACATCTTGCTCAATTGTTATCGTACCTACTCAAGGGCATCTCGAA
CGTACTGGGCGATTCTCGAAAGATGCCTGCTCGACAGTGCTGGCCAAAAC
CGTGTCTCGTAGCTACTACAGTAGGGCTTGTTGAGATCCTTAGTGACGCG
GCCTGCACCTCGCCCTGTGTTGTTCCCGTTAGCACTTGAGCGCTTCGATG
GTATTGGGCGGTACTTCTCGTAACCGCAGCAGCGTACCGCAGCGAGTGCT
CGCAACGCACTACATTAGCAGAAATCTCTCTCTGGGGACGACGTGGGCTG
TTCCGAAGCTACTGGGGTATACATGCCGGAACTGCAGTTGCCGTACTCAT
ACTGCAGCAAGTTCTTGATCCCAGTGTTGGCAAACTCTTTCGCACACCTA
CTTGGCCACTTCCAGATACTGTTATACTTGTTGCAAGTCAATATTGGCAA
AATCTTTGGCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:372173..373134-

>mRNA_S-ischiensis_contig82.19922.1 ID=mRNA_S-ischiensis_contig82.19922.1|Name=mRNA_S-ischiensis_contig82.19922.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=780bp|location=Sequence derived from alignment at S-ischiensis_contig82:372173..373134- (Schizocladia ischiensis KU_0333)
GCTCTATTGTCATCGCACCTGCTCAAGGGCATCTCAAACGTACTGGGCGA
TTCTCGGCTCTATTGTCATCGCACCTGCTCAAGGGCATCTCAAACGTACT
GGGCGATTCTCGCGAAAGATGCGTGCTTGACAGTCCTAGTGAAAATCTTG
TCCGTAGTGAACATCTTGAGAAAATCTTGCTCAATTGTCATTGCACCTAC
TCAAGGGCATCTCGAAACTACTGGCCGATTCTCGGCGATCGAAAGATGCG
TGCTTGACAGTCCTAGTGAAAATCTTGTCCGTAGTGAACATCTTGAGAAA
ATCTTGCTCAATTGTCATTGCACCTACTCAAGGGCATCTCGAAACTACTG
GCCGATTCTCGGCGATGGCATCTCGAAAGTACTGGTCAATTCTCGGTGCT
GCAGCGAAAGATGCGTGCTCGACAGTGTTAAGTTAGTGAAAGTCTTGTCC
TTAGTGAACATCTTGAACATCTTGCTCAATTGTTATCGTACCTACTCAAG
GGCATCTCGAACGTACTGGGCGATTCTCGAAAGATGCCTGCTCGACAGTG
CTGGCCAAAACCGTGTCTCGTAGGGCATCTCGAAAGTACTGGTCAATTCT
CGGTGCTGCAGCGAAAGATGCGTGCTCGACAGTGTTAAGTTAGTGAAAGT
CTTGTCCTTAGTGAACATCTTGAACATCTTGCTCAATTGTTATCGTACCT
ACTCAAGGGCATCTCGAACGTACTGGGCGATTCTCGAAAGATGCCTGCTC
GACAGTGCTGGCCAAAACCGTGTCTCGTAG
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