mRNA_S-ischiensis_contig82.19921.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19921.1
Unique NamemRNA_S-ischiensis_contig82.19921.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:371521..372221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19921.1prot_S-ischiensis_contig82.19921.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 371707..372213 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.547182-UTR-S-ischiensis_contig82:371520..3717061622817320.547182-UTR-S-ischiensis_contig82:371520..371706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 371521..371706 +
1695741024.4305956-UTR-S-ischiensis_contig82:371520..3717061695741024.4305956-UTR-S-ischiensis_contig82:371520..371706Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 371521..371706 +
1622817320.574666-UTR-S-ischiensis_contig82:372213..3722211622817320.574666-UTR-S-ischiensis_contig82:372213..372221Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 372214..372221 +
1695741024.4531324-UTR-S-ischiensis_contig82:372213..3722211695741024.4531324-UTR-S-ischiensis_contig82:372213..372221Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 372214..372221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817320.5632632-CDS-S-ischiensis_contig82:371706..3722131622817320.5632632-CDS-S-ischiensis_contig82:371706..372213Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 371707..372213 +
1695741024.4434514-CDS-S-ischiensis_contig82:371706..3722131695741024.4434514-CDS-S-ischiensis_contig82:371706..372213Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 371707..372213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19921.1

>prot_S-ischiensis_contig82.19921.1 ID=prot_S-ischiensis_contig82.19921.1|Name=mRNA_S-ischiensis_contig82.19921.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=169bp
MYSYCKRGHIYCYSSASDGQVSSFAKEFRLTLEASVCRSKWQVARTFGRA
AYAKGSARPARHRERALAAAVLHRHVTSTRSTTQYSGTRQVFCCRKTNKR
VGKNRFPYVTGQVVGREFANTWSKHLPLQYKYCTVTLLQKYEQLCYKKYD
TYCSGCAKDFANIDLQQV*
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mRNA from alignment at S-ischiensis_contig82:371521..372221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19921.1 ID=mRNA_S-ischiensis_contig82.19921.1|Name=mRNA_S-ischiensis_contig82.19921.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=701bp|location=Sequence derived from alignment at S-ischiensis_contig82:371521..372221+ (Schizocladia ischiensis KU_0333)
GGCGGCGCCGCCTGCGTGCGTGCGTGCGTGCGTGTGTGTGCGGCGACCGT
GCGGGGGGGAGATGTGTACCGGCACACTTAACCTCTTCTACCCCTGCTAA
ATTGGACTGACACACTGAAACCCTATGATTGTACGGACCCCAGGGGAAAA
CGGGTTAGGAGTCACGCAAGACCTTCCATTCAACCCATGTACTCGTACTG
CAAACGCGGCCATATTTATTGTTACAGTAGTGCTTCGGATGGCCAAGTAA
GTAGTTTTGCGAAAGAGTTTCGGCTAACATTGGAAGCGAGCGTTTGCCGC
AGTAAGTGGCAGGTAGCACGAACGTTTGGCCGAGCAGCTTACGCCAAAGG
TTCTGCTAGGCCTGCTAGGCATAGGGAGCGAGCACTTGCTGCTGCAGTGT
TGCACAGACATGTTACGAGTACAAGAAGTACAACCCAGTACTCCGGAACT
CGCCAAGTATTTTGTTGCAGGAAGACAAACAAGCGAGTGGGAAAGAATAG
GTTTCCCTACGTTACTGGCCAAGTAGTTGGGAGGGAGTTTGCTAACACGT
GGAGCAAGCACTTGCCGCTGCAGTACAAGTATTGCACAGTAACTCTGCTA
CAAAAGTACGAGCAACTCTGCTACAAGAAGTACGACACTTACTGTAGTGG
TTGTGCCAAAGATTTTGCCAATATTGACTTGCAACAAGTATAACAGTATC
T
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:371521..372221+

>mRNA_S-ischiensis_contig82.19921.1 ID=mRNA_S-ischiensis_contig82.19921.1|Name=mRNA_S-ischiensis_contig82.19921.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1014bp|location=Sequence derived from alignment at S-ischiensis_contig82:371521..372221+ (Schizocladia ischiensis KU_0333)
ATGTACTCGTACTGCAAACGCGGCCATATTTATTGTTACAGTAGTGCTTC
GGATGGCCAAGTAAGTAGTTTTGCGAAAGAGTTTCGGCTAACATTGGAAG
CGAGCGTTTGCCGCAGTAAGTGGCAGGTAGCACGAACGTTTGGCCGAGCA
GCTTACGCCAAAGGTTCTGCTAGGCCTGCTAGGCATAGGGAGCGAGCACT
TGCTGCTGCAGTGTTGCACAGACATGTTACGAGTACAAGAAGTACAACCC
AGTACTCCGGAACTCGCCAAGTATTTTGTTGCAGGAAGACAAACAAGCGA
GTGGGAAAGAATAGGTTTCCCTACGTTACTGGCCAAGTAGTTGGGAGGGA
GTTTGCTAACACGTGGAGCAAGCACTTGCCGCTGCAGTACAAGTATTGCA
CAGTAACTCTGCTACAAAAGTACGAGCAACTCTGCTACAAGAAGTACGAC
ACTTACTGTAGTGGTTGTGCCAAAGATTTTGCCAATATTGACTTGCAACA
AGTATAAATGTACTCGTACTGCAAACGCGGCCATATTTATTGTTACAGTA
GTGCTTCGGATGGCCAAGTAAGTAGTTTTGCGAAAGAGTTTCGGCTAACA
TTGGAAGCGAGCGTTTGCCGCAGTAAGTGGCAGGTAGCACGAACGTTTGG
CCGAGCAGCTTACGCCAAAGGTTCTGCTAGGCCTGCTAGGCATAGGGAGC
GAGCACTTGCTGCTGCAGTGTTGCACAGACATGTTACGAGTACAAGAAGT
ACAACCCAGTACTCCGGAACTCGCCAAGTATTTTGTTGCAGGAAGACAAA
CAAGCGAGTGGGAAAGAATAGGTTTCCCTACGTTACTGGCCAAGTAGTTG
GGAGGGAGTTTGCTAACACGTGGAGCAAGCACTTGCCGCTGCAGTACAAG
TATTGCACAGTAACTCTGCTACAAAAGTACGAGCAACTCTGCTACAAGAA
GTACGACACTTACTGTAGTGGTTGTGCCAAAGATTTTGCCAATATTGACT
TGCAACAAGTATAA
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