mRNA_S-ischiensis_contig82.19912.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19912.1
Unique NamemRNA_S-ischiensis_contig82.19912.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:235547..237033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006270.1
Exons3
Model size254
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19912.1prot_S-ischiensis_contig82.19912.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 235547..237021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.781084-CDS-S-ischiensis_contig82:235546..2356391622817319.781084-CDS-S-ischiensis_contig82:235546..235639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 235547..235639 -
1695741023.9792075-CDS-S-ischiensis_contig82:235546..2356391695741023.9792075-CDS-S-ischiensis_contig82:235546..235639Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 235547..235639 -
1622817319.7925618-CDS-S-ischiensis_contig82:236201..2363071622817319.7925618-CDS-S-ischiensis_contig82:236201..236307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 236202..236307 -
1695741023.98886-CDS-S-ischiensis_contig82:236201..2363071695741023.98886-CDS-S-ischiensis_contig82:236201..236307Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 236202..236307 -
1622817319.807111-CDS-S-ischiensis_contig82:236980..2370211622817319.807111-CDS-S-ischiensis_contig82:236980..237021Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 236981..237021 -
1695741023.998419-CDS-S-ischiensis_contig82:236980..2370211695741023.998419-CDS-S-ischiensis_contig82:236980..237021Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 236981..237021 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817319.8216064-UTR-S-ischiensis_contig82:237021..2370331622817319.8216064-UTR-S-ischiensis_contig82:237021..237033Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 237022..237033 -
1695741024.0077982-UTR-S-ischiensis_contig82:237021..2370331695741024.0077982-UTR-S-ischiensis_contig82:237021..237033Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 237022..237033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19912.1

>prot_S-ischiensis_contig82.19912.1 ID=prot_S-ischiensis_contig82.19912.1|Name=mRNA_S-ischiensis_contig82.19912.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
MLDRLSKQTLERERLAAAAMEAEDQAAELRCRLEEQQRRVSGVGLGDAKE
AGATAKHGGHGTLPSPCAVSTKGTDTEEAG
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mRNA from alignment at S-ischiensis_contig82:235547..237033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19912.1 ID=mRNA_S-ischiensis_contig82.19912.1|Name=mRNA_S-ischiensis_contig82.19912.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1487bp|location=Sequence derived from alignment at S-ischiensis_contig82:235547..237033- (Schizocladia ischiensis KU_0333)
GAGGTTTCGGCCATGCTGGACCGCCTGTCCAAGCAGACGCTGGAGCGGGA
GAGGTGATACTTGAGTACGCCTGACGACTTAGCCCCGCTGTGATGGCACA
AGTGTAGTGTATGTGCTCTAGTGGTTACTGTCTGTGTGCTAGTACTACAT
ACGGACGTAGTGGGAGAGGTGATAGGAGTAGTACGCCTGACAACCCCTAA
AGTGATAGCACAACCTGCAGTGTATGTACTGTAGCAGTTGCTGTCTGTGT
ACGAGTACTACTGGTGCTGTAGTATATATACTTCGAAGTATGTACTCTAC
TCCCGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGCTC
GACACTAGCGTGTGTACACATGTTCGGACGTGGTTTCTCGTCTCTGTGCA
TGCCCTGGACCCGAACGATCCTCGTCTTTGCTCCTTCTCGTGGATCGCTG
GCCAGCTGTAGCTGTACTTGTACGAGCAGTTTGACATCACATCACATCAA
TCTCTATGGACGAGCACGCTCGATTTCGCACGCTGGCGAGGCTGTAGAGT
ACCTCGCTAGTCACGTTTTTTGCAGTAAGACAAACAAGCGAGTGGGGAAG
AAGAGGTCTCCCTACTTTCGCGAGTTCAGGGCCCCACCCCCGGAAGCCCT
TCCTTTCACTTGCCTTCACTCGCTACCATACTCACTTTTCTTTTTGTGGC
ACTAACACGATGGGAAATCGAACCAGGCTTGCTGCGGCCGCTATGGAGGC
GGAGGACCAAGCGGCGGAACTGCGGTGCCGGCTGGAAGAACAACAGCGCC
GTGTCTCTGGGGTGGGCTTGGGGGACGCAAAGGTGACGAATGTACAGTAT
GTTTTGCAATAATGACTGCTAAAGTACGAAGCACTTGAGCGCCTCGTCTC
ATGGCAAACGCTGTGGACCTTGTTGGATTAGCGCCGCTAGAGAGGGCAGT
GAGGCCTGGGGGCCTGTGGTGACTATGGCATACCTAAGGTATATTGCGGG
GAGCTAGAGATATCTTCTAGATTGAGAGGCTACAAGGGGCTGTACATTGT
CTTGTATACAATAGGGGACAAGAGGCCATGTGTGTCGTTCCAAACATCAT
GGATACAGATGTTCTGACAGTGACGACATACAGTGCCTGTGGAGAGCTGA
AACTACAGAACGATACAGCACTTCCAAGTATCATTCCCAAACCATCGGTC
AATGCGGTGGGGTGGCCACCCCCTCCCACCCTGACTCTGCCGTGGGAGGT
AGGGGGCCTGCTACGTCTCGATCGATCGAGGCGCGTGGTCAATGGTCTCG
GGACTACGCCAAGCACAATGCGAATGCATACTTCAAAGTATGTATATGCC
CGCGCCCGCCTTCCCGCCCTCCCGCCCACACGACCATCCTCCAGGAGGCG
GGCGCCACGGCGAAGCATGGCGGACACGGAACCCTCCCGTCCCCCTGCGC
AGTATCTACAAAGGGGACAGACACAGAGGAAGCAGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:235547..237033-

>mRNA_S-ischiensis_contig82.19912.1 ID=mRNA_S-ischiensis_contig82.19912.1|Name=mRNA_S-ischiensis_contig82.19912.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig82:235547..237033- (Schizocladia ischiensis KU_0333)
ATGCTGGACCGCCTGTCCAAGCAGACGCTGGAGCGGGAGAGATGCTGGAC
CGCCTGTCCAAGCAGACGCTGGAGCGGGAGAGGCTTGCTGCGGCCGCTAT
GGAGGCGGAGGACCAAGCGGCGGAACTGCGGTGCCGGCTGGAAGAACAAC
AGCGCCGTGTCTCTGGGGTGGGCTTGGGGGACGCAAAGGCTTGCTGCGGC
CGCTATGGAGGCGGAGGACCAAGCGGCGGAACTGCGGTGCCGGCTGGAAG
AACAACAGCGCCGTGTCTCTGGGGTGGGCTTGGGGGACGCAAAGGAGGCG
GGCGCCACGGCGAAGCATGGCGGACACGGAACCCTCCCGTCCCCCTGCGC
AGTATCTACAAAGGGGACAGACACAGAGGAAGCAGGCGAGGCGGGCGCCA
CGGCGAAGCATGGCGGACACGGAACCCTCCCGTCCCCCTGCGCAGTATCT
ACAAAGGGGACAGACACAGAGGAAGCAGGC
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