mRNA_S-ischiensis_contig82.19911.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig82.19911.1
Unique NamemRNA_S-ischiensis_contig82.19911.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A835YRS3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.930e-36
Identity = 68/108 (62.96%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  100 LATATSAFVVPTPSFRVTAKTGTALNGAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRA-AKEAGN 420
            L  A SAFV P  S  +  ++ + L   GKYD +LWD+AAK DV STYDAS+PW ETNFDPY +D  GNACDP+GYYPGEGKYKDPIRP VSF +Y K R  A +AGN
Sbjct:   11 LVAAASAFVAP--SVPLAQRSCSRLFAEGKYDGKLWDEAAKQDVLSTYDASKPWGETNFDPYKRDGNGNACDPSGYYPGEGKYKDPIRPSVSFAEYQKQREEAAKAGN 116
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: D7G3Z1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Z1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.070e-32
Identity = 65/117 (55.56%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:   82 IAGVAVLATATSAFVVPTPSFR------VTAKTGTALNGAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAAKEA 414
            + GV  LA+A SAFV P  + R       T  + T + G GKYD +LWD AAKDDV S Y+ ++PWS+ NFDP+ KDA GN CD +GYYPGE  YKDPIRP VS+ DYL  +A KEA
Sbjct:   12 VVGVLALASAASAFVAPGAAGRGLTQQQPTRTSATVVFGQGKYDGKLWDDAAKDDVKSMYNPNEPWSDNNFDPFVKDAAGNKCDSSGYYPGETMYKDPIRPAVSYADYLAAKAKKEA 128
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S2CF61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CF61_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.150e-20
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:   64 MKCAGIIAGVAVLATATSAFVVPTPSFRVTAKTGTALNGAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAA 405
            M  + ++  +A+LA A SAFVVPT       +T  A+   GKYD QLWD AAK DV + +D   P S+ NF+P+ ++A GNA D +G++PGE KYKDP+RP  SFE  + + AA
Sbjct:    1 MNFSRVLVALAMLAGA-SAFVVPT-----VLRTSVAVK-YGKYDEQLWDIAAKQDVFAAWDPQSPRSDVNFNPFERNADGNAADCSGFFPGEAKYKDPMRPDASFEIMMAENAA 107
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S3NH85_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NH85_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.830e-19
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  178 GAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDR 399
            GAGKYD QLWD  AK D+ + +D + P SETNF+P+ ++  GNACDP+G++PG+ KYKDP+RP + +   L ++
Sbjct:   34 GAGKYDGQLWDMEAKMDIWNMWDPNSPRSETNFNPFERNNDGNACDPSGWFPGDTKYKDPMRPSMDYAGMLAEK 107
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A8J2SIU4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIU4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.860e-16
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  172 LNGAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAA 405
              GAGKY+ Q++    K D+   +D + P SETNF+P+ ++A GNACD +GY+PGEGKY DP RP V F   + ++ A
Sbjct:   61 FGGAGKYEGQIFGFPEKKDLWENWDPNSPRSETNFNPFERNADGNACDCSGYFPGEGKYSDPARPDVDFAAMMAEKTA 138
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A1Z5KMX0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMX0_FISSO)

HSP 1 Score: 80.5 bits (197), Expect = 3.730e-15
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:  115 SAFVVPTPSFRVTAKTGTALNGAGKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAAKE 411
            +AF    P+F   + T    +  GKYD +LWD  AK DV + ++ + P S  NF+P+ +  +GN+ D +G+YPGEG+YKDPIRP V+F   +++R   E
Sbjct:   16 TAFAPSRPAFGARSATSLFSSPYGKYDEKLWDMTAKLDVYNAWNPAAPRSPQNFNPF-ETFEGNSPDASGFYPGEGRYKDPIRPDVNFTTMMEERKILE 113
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S2VAU7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VAU7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.890e-15
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 1 
Query:   79 IIAGVAVLATATSAFVVPTPSFRVTAKTGTALNGA-GKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRA 402
            I+A  A+LA+A SAF    P+F   ++  TA+N   GKYD Q W+  AK ++ + +D +QP S  NF+P+ +  +GN+ D +G+YPGEG+YKDP+RP VSF     +RA
Sbjct:   45 IVAAFALLASA-SAFAPSKPAF---SRVSTAVNMEYGKYDGQEWNIDAKQEIYAAWDPAQPRSVFNFNPF-ETFEGNSPDASGFYPGEGRYKDPVRPDVSFASMQAERA 148
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S1TN95_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TN95_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.170e-14
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  187 KYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSF 378
            KY  Q+WD  A  DV + +D + P +E NF+P+ K+  GN CDPNG++PG+G Y+DPIRP V F
Sbjct:   63 KYFGQVWDFEAMKDVYNQWDPNAPRTEDNFNPFEKNKDGNQCDPNGWFPGDGLYRDPIRPDVDF 126
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S4HPX0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPX0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.530e-13
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:  184 GKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAAKEAGN 420
            GKYD Q+WD  AK ++ + +D + P S  NF+P+ +  +GN+ D +G+YPGEG+YKDP RP VSF+  + +RA  E  N
Sbjct:  115 GKYDEQMWDGDAKKEIYAAWDPNSPRSPANFNPF-ETWEGNSPDASGFYPGEGRYKDPARPDVSFDLMMIERAEIEERN 192
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BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Match: A0A7S0AS99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AS99_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.320e-13
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:   85 AGVAVLATATSAFVVPTPSFRVTAKTGTALNGA-GKYDNQLWDKAAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIRPQVSFEDYLKDRAAKEA 414
            A V  LAT  SAF       RV+    T LN   GKYD QLWD AAK DV ST+D + P +  NF+P+ +   GN+ D +G YPGE +YKDP R  V++   L+++A  EA
Sbjct:   11 AAVLALATGASAFAPALNGARVS----THLNFEYGKYDEQLWDHAAKKDVYSTWDPNAPRTSANFNPF-ETFDGNSPDASGIYPGENRYKDPKRGDVNYAQMLEEKADLEA 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig82.19911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRS3_9STRA4.930e-3662.96Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D7G3Z1_ECTSI1.070e-3255.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CF61_9STRA3.150e-2047.37Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NH85_9STRA4.830e-1951.35Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2SIU4_9STRA2.860e-1647.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5KMX0_FISSO3.730e-1541.41Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2VAU7_9STRA4.890e-1544.95Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1TN95_9STRA7.170e-1451.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4HPX0_9STRA1.530e-1346.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0AS99_9STRA3.320e-1345.95Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig82contigS-ischiensis_contig82:220178..221962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue6.3e-15
Seed eggNOG ortholog2850.Phatr54979
EggNOG OGs2E4K9@1,2SBFZ@2759,2XD68@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000740.1
Exons3
Model size905
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig82.19911.1prot_S-ischiensis_contig82.19911.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig82 220660..221899 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817321.0862176-UTR-S-ischiensis_contig82:220177..2206591622817321.0862176-UTR-S-ischiensis_contig82:220177..220659Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 220178..220659 -
1695741024.815739-UTR-S-ischiensis_contig82:220177..2206591695741024.815739-UTR-S-ischiensis_contig82:220177..220659Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 220178..220659 -
1622817321.1310136-UTR-S-ischiensis_contig82:221899..2219621622817321.1310136-UTR-S-ischiensis_contig82:221899..221962Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 221900..221962 -
1695741024.871413-UTR-S-ischiensis_contig82:221899..2219621695741024.871413-UTR-S-ischiensis_contig82:221899..221962Schizocladia ischiensis KU_0333UTRS-ischiensis_contig82 221900..221962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817321.09842-CDS-S-ischiensis_contig82:220659..2207421622817321.09842-CDS-S-ischiensis_contig82:220659..220742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 220660..220742 -
1695741024.8307047-CDS-S-ischiensis_contig82:220659..2207421695741024.8307047-CDS-S-ischiensis_contig82:220659..220742Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 220660..220742 -
1622817321.1094372-CDS-S-ischiensis_contig82:221186..2213101622817321.1094372-CDS-S-ischiensis_contig82:221186..221310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 221187..221310 -
1695741024.8418727-CDS-S-ischiensis_contig82:221186..2213101695741024.8418727-CDS-S-ischiensis_contig82:221186..221310Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 221187..221310 -
1622817321.1201513-CDS-S-ischiensis_contig82:221746..2218991622817321.1201513-CDS-S-ischiensis_contig82:221746..221899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 221747..221899 -
1695741024.8526244-CDS-S-ischiensis_contig82:221746..2218991695741024.8526244-CDS-S-ischiensis_contig82:221746..221899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig82 221747..221899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig82.19911.1

>prot_S-ischiensis_contig82.19911.1 ID=prot_S-ischiensis_contig82.19911.1|Name=mRNA_S-ischiensis_contig82.19911.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
MKCAGIIAGVAVLATATSAFVVPTPSFRVTAKTGTALNGAGKYDNQLWDK
AAKDDVASTYDASQPWSETNFDPYTKDAKGNACDPNGYYPGEGKYKDPIR
PQVSFEDYLKDRAAKEAGN*
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mRNA from alignment at S-ischiensis_contig82:220178..221962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig82.19911.1 ID=mRNA_S-ischiensis_contig82.19911.1|Name=mRNA_S-ischiensis_contig82.19911.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1785bp|location=Sequence derived from alignment at S-ischiensis_contig82:220178..221962- (Schizocladia ischiensis KU_0333)
ACCCAGCTGCTGGCTGGCAGCGCCACACAGCTCATTAAGAGTTTGCGCAC
AACAACAATCATCATGAAGTGCGCCGGTATCATCGCTGGCGTGGCCGTCC
TGGCCACCGCCACGTCCGCCTTCGTGGTCCCGACCCCTTCCTTCCGCGTG
ACGGCCAAGACTGGCACTGCGCTCAACGGGGCCGGCAAGTACGACAACCA
GCTGTGGGACAAGGCGGTGAGTAGTGGGGGGCAGCCTGGTAGGCACCGCT
CTTCTCCCCGATGGGGTTGCTTTCGTACTCTTGAACGCATTTGCGATCAT
CGGCGCCTTCGGCGCGCACGCGCATTCTTGTTCCGGTTGGCGTTTGCCAT
GATCGGCGCCTGCGACGCGCACGCGCATACCTTCTGTGCTCGGGTTGGGG
GTCATGTTGGCCCGTCCTCCCCCCACTATGGCTTTCAACACAGTCTGCTG
CATATCTGCACGGATGAGTATGGAGTGCCGCGTGGCATGGCTTTGAACAT
ACGCCAGGCCGCCTCACGATGCAGGGGCAGACGTTCGCAAGCATCAAGCA
GGCCATGTTTTCATCAAGTGCGTGGTTGCAACACAGCAACATGACCGTCG
CCCCCCACCAACTGTTGTCTTGTCTGTGCGTGATCACTGCCTGCCCGGAC
AGGCCAAGGACGACGTGGCCTCCACGTATGACGCCTCCCAGCCCTGGTCG
GAGACCAACTTCGACCCCTACACCAAGGACGCGAAGGGCAACGCCTGCGA
CCCCAATGGCTACTACCCGGGGGAGGGTGAGGCAGTATTTCATGGTTGGG
CGGGATAACACTGCTTGCAGGCCGTGCATAATACTTGTCGCCCTCGTGGG
TATGATCATATCTAGGAGACATGCCATGGAGTTGGTGGCGCAAATGCTGG
CCAATGTTCCTCGCGATCGCGAGGAAGGTTGCATTTGCTTTGTCCTCGCC
TTGAGGCACGACTTTCATCTATAGTTCCATTGTCGATGGCGCTTCGCTGC
CCAGTGTGGATGGCCGCGCCCGGCAGTTGAACGTTTGCCACCGCTCGCTG
CGTTCGTTTGCTGTGAACAGGTACTGCAGTATGGGTGGCAACCTGCCCCC
AGCCGCGTTTGGGGTGCGGCTGCCGCGGCCGATCCATGTGCCGCCACCTG
TGTGCACTTCTTCCTTTGCGCCGCTGCGACTGACCTGTACCCTATCCCCG
CTGTCCCTGTCCCATCGCAGGCAAGTACAAGGACCCCATCCGCCCGCAGG
TGAGCTTCGAGGACTACCTCAAAGACCGCGCCGCCAAGGAGGCTGGCAAC
TAGAGGGCCCGCGTCGCCCGCGCCCCTGCCTCGATGCGTGCCATTTGCCT
GTTGCGTGCAGGGGATGATGTCGATTGGTGTGCTGTTTGTGTGTGTTTGT
GAGTTTGTCTTGTAGGTTCGGCAGGCACGCAAATATCCATGGCGTATGTC
GCGAAAATTGGTAGCGAAACGCTGACCTCGTATTACGACTGAGCTGAGCT
CCCCGCATTCCGTGGGGCTGCTTGACGTTCAACTGAGACGCGTTTGGCGG
CGCTCTCCCCACGACGCAAGCGTGTTGGGGGCTCTGCCTGTGGTCTGCAC
TCATGGGGTTTGCATCGCACCGGTGCAGCCCCAACATTGTGATGGTGCCC
TACACTGCACCACACACGGCTCCGTTTTTCGGAGCGCACTGGTCGCGGGG
GTGTACATCCTGTCGAGAGCCAGGATCCCGCTCAACAGGCTATAATATAC
AAGGTCTCGTGCACACGACGAAGGACCGTGAACCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig82:220178..221962-

>mRNA_S-ischiensis_contig82.19911.1 ID=mRNA_S-ischiensis_contig82.19911.1|Name=mRNA_S-ischiensis_contig82.19911.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig82:220178..221962- (Schizocladia ischiensis KU_0333)
ATGAAGTGCGCCGGTATCATCGCTGGCGTGGCCGTCCTGGCCACCGCCAC
GTCCGCCTTCGTGGTCCCGACCCCTTCCTTCCGCGTGACGGCCAAGACTG
GCACTGCGCTCAACGGGGCCGGCAAGTACGACAACCAGCTGTGGGACAAG
GCGATGAAGTGCGCCGGTATCATCGCTGGCGTGGCCGTCCTGGCCACCGC
CACGTCCGCCTTCGTGGTCCCGACCCCTTCCTTCCGCGTGACGGCCAAGA
CTGGCACTGCGCTCAACGGGGCCGGCAAGTACGACAACCAGCTGTGGGAC
AAGGCGGCCAAGGACGACGTGGCCTCCACGTATGACGCCTCCCAGCCCTG
GTCGGAGACCAACTTCGACCCCTACACCAAGGACGCGAAGGGCAACGCCT
GCGACCCCAATGGCTACTACCCGGGGGAGGGCCAAGGACGACGTGGCCTC
CACGTATGACGCCTCCCAGCCCTGGTCGGAGACCAACTTCGACCCCTACA
CCAAGGACGCGAAGGGCAACGCCTGCGACCCCAATGGCTACTACCCGGGG
GAGGGCAAGTACAAGGACCCCATCCGCCCGCAGGTGAGCTTCGAGGACTA
CCTCAAAGACCGCGCCGCCAAGGAGGCTGGCAACTAGGCAAGTACAAGGA
CCCCATCCGCCCGCAGGTGAGCTTCGAGGACTACCTCAAAGACCGCGCCG
CCAAGGAGGCTGGCAACTAG
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