mRNA_S-ischiensis_contig81.19885.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig81.19885.1
Unique NamemRNA_S-ischiensis_contig81.19885.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig81.19885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig81contigS-ischiensis_contig81:357195..361835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size729
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig81.19885.1prot_S-ischiensis_contig81.19885.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig81 357195..361835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.7913485-CDS-S-ischiensis_contig81:357194..3573831622817310.7913485-CDS-S-ischiensis_contig81:357194..357383Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 357195..357383 +
1695741016.5363607-CDS-S-ischiensis_contig81:357194..3573831695741016.5363607-CDS-S-ischiensis_contig81:357194..357383Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 357195..357383 +
1622817310.805959-CDS-S-ischiensis_contig81:359445..3596231622817310.805959-CDS-S-ischiensis_contig81:359445..359623Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 359446..359623 +
1695741016.5458384-CDS-S-ischiensis_contig81:359445..3596231695741016.5458384-CDS-S-ischiensis_contig81:359445..359623Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 359446..359623 +
1622817310.8170292-CDS-S-ischiensis_contig81:360726..3608611622817310.8170292-CDS-S-ischiensis_contig81:360726..360861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 360727..360861 +
1695741016.5553246-CDS-S-ischiensis_contig81:360726..3608611695741016.5553246-CDS-S-ischiensis_contig81:360726..360861Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 360727..360861 +
1622817310.8281648-CDS-S-ischiensis_contig81:361608..3618351622817310.8281648-CDS-S-ischiensis_contig81:361608..361835Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 361609..361835 +
1695741016.5645666-CDS-S-ischiensis_contig81:361608..3618351695741016.5645666-CDS-S-ischiensis_contig81:361608..361835Schizocladia ischiensis KU_0333CDSS-ischiensis_contig81 361609..361835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig81.19885.1

>prot_S-ischiensis_contig81.19885.1 ID=prot_S-ischiensis_contig81.19885.1|Name=mRNA_S-ischiensis_contig81.19885.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=243bp
MSAAAGAGVAVMAAAVASARPPPAVSREPNCQTRVQMIPETARRLYELGL
LAGPQSRLGKLLQVEDFAPTRRLGESGHVLFTNSGGELEASIKSGLTLDR
LLEALGEYVANDAQAKATQWPQGELLNLLGASYGQVVGANAETSAVRKEL
EKAKAKVEALKAELAEKVAAVRTLRSDNSQLTRRLDRTQQQQETQRKRFR
AVHPLLPKARATTATAAATAAGAQRGSDTPSVFNETPGGGGAG
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mRNA from alignment at S-ischiensis_contig81:357195..361835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig81.19885.1 ID=mRNA_S-ischiensis_contig81.19885.1|Name=mRNA_S-ischiensis_contig81.19885.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4641bp|location=Sequence derived from alignment at S-ischiensis_contig81:357195..361835+ (Schizocladia ischiensis KU_0333)
ATGTCGGCCGCGGCGGGGGCGGGCGTGGCCGTGATGGCGGCCGCCGTGGC
GTCTGCGCGGCCACCCCCGGCGGTGAGCAGGGAGCCCAACTGCCAGACGC
GGGTGCAGATGATTCCGGAGACGGCACGGCGGCTTTACGAGCTGGGTCTG
CTGGCCGGCCCGCAGTCCCGCCTGGGCAAGCTTCTCCAGGTGAGAGGTTG
GGTTCAGTGATGGGATATATGGGCAAATCAACCTGTTTATCGACAGTGCT
GATCCATACATCGATAGGCGATATTCGAAGTGTGACCCACACTAAATCCA
AGTAGCTAGTAACGCCACCCACAGTATCAGCCAAGCCCGATAACTATCCA
CGGATCGATATCCCATCACTGCCGCGTTGGGTTAGAATCGGGTTCAGGGT
TTCGGGTCACGAGCGGCAGATTTGCTGGTGGGCCTCCAGGGGGCGCTGTT
TTAACGGCGGCTGTCATATATTACTTGCCCTTTTAGACTCCTTAACCCTT
TCCCCCCCGCTAGATTGGACTTGCACACGAAAACCGTATGATTATGCGGA
CCCCAGGGGTAGAAGGGTTAAGGATACACCCGCGTGCAGATGATACCGGC
GACGGCACGTCGGCTGTACGAGCTGAGCCTCCAGGTGGGGTAGAATCGGG
TTCACGGTTTTTGGGTCGCGGCTGATTTGTTGGCGGGCTTGGGGCGCAGT
TTTCATGGCGACGGTTATATATTATTTACCCTTAGACTCCTTAACTTAGC
CCTTTTACCCATGCTAGATTGGACGTACACACTAACAACGTACGAGTACT
CGAATATGATTATGCGAACCCCAGGGGTAAAGGGTTAAGGACAATGCCCG
GGTGCAGATGATTCCGGAGACGGCGCGGGGGCTGTACGAGCTGAGTCTGC
TGGCTGGCCCGCAGTCCCGCCTGGGCAAGCTTCTCCAGGCGAGACGTTGT
TTTGGGGGTTAGGGGTTGGGTTGGGTTCGAAAAAGGGGGCGGGGTTTCGG
GCGGTTGCGGTGGCAAGATAGCCCAGCGTGTACAGTAGTCAAGAGCTCTA
CTGACTACGGTAGACATGCGAGGTTAACGCTTTATGTTGCAAGACAACTA
CTGTACAGTAGGCCAATGAGTGTGTACGACTACATGAATATGTACTACGT
ATATATACTCATATACTGGTGTTTTGCTCAGCCCTCGACGGCGCGTGGTC
AGTAGTGCCCTCTGGACTACGGCAAGCTCTTTTGCATGTCAGCACATTTC
CACGTGTGACTGTACTGTACGTACGAAGTGTACAGTACTTTGTCTCCCAA
CCTCTTGGGGATTATGGAAACCAAGTCTCCTAACTACTTGGGTCGTTTGA
AAATCGTTCTCCTAACTACTGGGACATTTTGAAACCGGTCTCCAAACTGC
AGTACTAGGGTTCTGTGACTCTCGTTTGAAACCGGTCGCCTAAGTACTAG
GGTTCTGTGACTATCTTTTGAAGCCGGTCTCCTTGGCTACTTGGGTTCTG
TGACACTCTTTTGAGACCTGTCTGCTAGCTACTTGGGTTCTGTGAAACTC
TTTTGAGACCTGTCTGCTAGCTACTTGGATTCTGTGAACTCGTTCTTCCG
ACTACTGCGCTTGGATGGGGACTACGGCAAGCTCTGTTGGATGCGAGCAC
ATGATGCTTTTACAACATACTTCGTATTTTGAAGTATACACTGGTGCTTC
TCTCCACTGGAGTTCCCAGCAACTGCAGCACCAGACTGGGCAGTAGTAAA
TCATGAGATGTGATGTGATGTATACTCTAATGTGCTGTAGTTTGACACCA
CGTCACGTCACAATTGCTCGCCGATGTGATGTGATGTGATGTGTACTCTG
TTGCGCTGTAGTTGGACATCACGTAACATCACATCACATCGCATCGCATC
ACATCACATCACGCCATATTTGACTAGAGTGTGATGTGATATGTACACTA
ATGCACTGTAGTTTGACATCACACTACATCTCATTGCATCACATCGCGCC
CAGGTGTTTGACGTCACATCAGTTTGGCTAAACTGTGATGTGATGTGTAC
TCCAATGCACTGTAGTTTGACATCACATCACATCACATCGCACCGCATAG
CGCCCAGGTGGACGACTTTGCGCCGACGCGCAGGTTAGGTTGACGTCATA
TCACATCACAATTACTCGCCGATGTTTTGTGATGTGATGTGATGTGATGT
TTACTCTAATGCACTGTAGTTTGACATCACATCACATGACATCACGCCCA
GGTGGAGGACTTTGCGCCGACGCGCCGGTTGGGTGAGAGCGGGCACGTCC
TCTTCACCAACTCTGGCGGGGAACTGGAGGCCAGCATCAAGTCTGGGCTC
ACGCTGGACAGGCTGCTAGAGGCCTTGGGGGAGTACGTGGCCAATGACGC
ACAGGCCAAGGCGACACAGTGGCCCCAAGGTTGATGTGTGTGTGTATGTG
TGTGTGTGTGTGTGTGTCTGTGCGCGCGTGATGTGATGTGATTTGATGCG
ATGTACACACACAAATACTGTAGTTTGACATCACATCACATCACATCACA
CCGCATCGTGACTTGCAGGTGTGTGTGTGTGTGTGCGCGCGCGTGTGCGT
GTGTGTGATGTGATGTGATTTGCACAAACACTTTAGTTTGAGACCACATC
GCATCATTGTGTTATCGGTGTGTGTGTGTGCGTGTGCGTGTGTGTGATGT
GATGTGATGCGATGTGATGTGCACTAAAAAACACTGTAGTTTGACGTCAC
ATCACATCACATCACGTCATTGTGTTGCCGGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGTGCGTGCGTGCGTGCATGCATGTGTGTGCGTGTGTTC
GTGTGTGAGGGTGTGTGTGTGTGTGTGTGTGTGCGTGCCTGCGTGCGTGC
ATGCGTGTGTGTGTGTGCACGTGCATGTGTGTGTGGGTGTGTGCGTGTGT
GCGTGCTTGTGTGTGTGTGTGTGTGTGTAACAAAGTCACAGAGTGATGTG
ATGTACAATGAAGTACTTCCAAGCACTTCCAAGTACGCTTTTGTGTGCCC
CCCCCCCAACCAAGGAGAGGTTGGCCGTGCTTGTAGCCGGCCTTCCCAAC
AACAGAGGAAACAGTGCTCTGTCCCTTAGGGTCACTCCTGTGGTGTGATG
TGATGTGATGTCAAACTACTGCATTTTAGAGGGCACATCACATCAATTCA
CATCAACATCACAGGGGCCATCCCTGCGGGACGCATGGTCAGTGGCCGTA
TGGCTGCGGCGGGCAACTCATGGGTAACCCCCCCCGCAGGCCTGCTCGTA
CGGTTGCGCTACTAATATGATGTGATGTGATATGTACTCTAAAAGACTGT
CATTTGACATCACATCACATCACATCATACGGCTGCAGCAGGCAACTCAC
TCGTACCCCCCCCCCCCCACTGCGCAACTTCTGAATCTGCTTGGCGCGAT
AACTACCTATCTACTGATCGATATTCCATCACTGCGGCAGGCAACTCACG
GGTACCCCCCCCCCCCCCCCCCCACTGCGTAGGCGAGCTTCTAAATCTGC
TTGGGGCATCCTACGGGCAGGTGGTGGGGGCCAACGCCGAGACCAGCGCA
GTTAGGAAGGAGCTGGAGAAGGCTAAGGCAAAGGTGGAGGCCCTCAAGGC
AGAATTGGCGGAGAAAGGTGGGGGAATACATCCTTTTTGATTATACTTCG
TACTACTGTCCTACTTCTTTAAAAGGAAGGATCTCGAGAAGGCTAAGGCA
AAGGTGGAGGCCCTCAAGGCCGAATTGGCAGAGAAAGGTGGGGGAGTATT
TATTACGAAGTATCAGTGATGGGATATCGATCAGTACTGTAGGTAGTTAT
CAGTGAAAAGTTATCGGCTAGGAAGGAGCTGGAGAAGGCCAAGGCCAAGG
TGGACGCCCTCAAGGCTGAATTGGCCGAGAAAGGTGGGAGAATACCGTAC
AATCAGCTGGATAGCCACTATTACGATAACACTCAATCTCACACACGTGC
GATTGTACTTCCCGAAGTACCCGTTACAATTTTTTGTGAATAGCAATCAG
CTGGTCCGGCGAATCGGACCCGAATCGGAGCCACTAATATGATACCCTGA
ATTCTTAAATGTGATAGCCACTAATGCGAGAACAGCCAATCTCACACACG
TGCGATTGTACCTCGCTACAATTTATGTCAATCGCCCCGCTGGCCCACCC
CGCGCTCGTCCCACGACCGGACCGGCGAAAACAATCGCCGCCGTCCGTAC
CCCTAAGTGGTGCCCTTTTAGCCCTCAACTAGAGGCAATTGGGGGTAATT
AAGTAGACCTAGAATGAAGGCTAATTAGGCCCTACTTAACCTCTATTGCA
AGTGCCAACCCTGACCCCGCCGCCCCAACCCGCGCTCGTCCCACATCCGG
ACCGGCGATTGCAGTCGCCGCCGTCCGTACCCTCCGCAGCGACAACAGCC
AGCTCACCAGGCGCCTAGACAGGACCCAGCAGCAGCAGGAGACTCAGCGC
AAACGTTTCCGTGCTGTTCACCCCCTCTTGCCCAAGGCCCGCGCCACCAC
CGCCACCGCCGCTGCCACCGCCGCCGGTGCACAACGAGGCAGCGACACGC
CCTCCGTCTTCAACGAAACCCCGGGGGGGGGCGGGGCCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig81:357195..361835+

>mRNA_S-ischiensis_contig81.19885.1 ID=mRNA_S-ischiensis_contig81.19885.1|Name=mRNA_S-ischiensis_contig81.19885.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1458bp|location=Sequence derived from alignment at S-ischiensis_contig81:357195..361835+ (Schizocladia ischiensis KU_0333)
ATGTCGGCCGCGGCGGGGGCGGGCGTGGCCGTGATGGCGGCCGCCGTGGC
GTCTGCGCGGCCACCCCCGGCGGTGAGCAGGGAGCCCAACTGCCAGACGC
GGGTGCAGATGATTCCGGAGACGGCACGGCGGCTTTACGAGCTGGGTCTG
CTGGCCGGCCCGCAGTCCCGCCTGGGCAAGCTTCTCCAGATGTCGGCCGC
GGCGGGGGCGGGCGTGGCCGTGATGGCGGCCGCCGTGGCGTCTGCGCGGC
CACCCCCGGCGGTGAGCAGGGAGCCCAACTGCCAGACGCGGGTGCAGATG
ATTCCGGAGACGGCACGGCGGCTTTACGAGCTGGGTCTGCTGGCCGGCCC
GCAGTCCCGCCTGGGCAAGCTTCTCCAGGTGGAGGACTTTGCGCCGACGC
GCCGGTTGGGTGAGAGCGGGCACGTCCTCTTCACCAACTCTGGCGGGGAA
CTGGAGGCCAGCATCAAGTCTGGGCTCACGCTGGACAGGCTGCTAGAGGC
CTTGGGGGAGTACGTGGCCAATGACGCACAGGCCAAGGCGACACAGTGGC
CCCAAGGTGGAGGACTTTGCGCCGACGCGCCGGTTGGGTGAGAGCGGGCA
CGTCCTCTTCACCAACTCTGGCGGGGAACTGGAGGCCAGCATCAAGTCTG
GGCTCACGCTGGACAGGCTGCTAGAGGCCTTGGGGGAGTACGTGGCCAAT
GACGCACAGGCCAAGGCGACACAGTGGCCCCAAGGCGAGCTTCTAAATCT
GCTTGGGGCATCCTACGGGCAGGTGGTGGGGGCCAACGCCGAGACCAGCG
CAGTTAGGAAGGAGCTGGAGAAGGCTAAGGCAAAGGTGGAGGCCCTCAAG
GCAGAATTGGCGGAGAAAGGCGAGCTTCTAAATCTGCTTGGGGCATCCTA
CGGGCAGGTGGTGGGGGCCAACGCCGAGACCAGCGCAGTTAGGAAGGAGC
TGGAGAAGGCTAAGGCAAAGGTGGAGGCCCTCAAGGCAGAATTGGCGGAG
AAAGTCGCCGCCGTCCGTACCCTCCGCAGCGACAACAGCCAGCTCACCAG
GCGCCTAGACAGGACCCAGCAGCAGCAGGAGACTCAGCGCAAACGTTTCC
GTGCTGTTCACCCCCTCTTGCCCAAGGCCCGCGCCACCACCGCCACCGCC
GCTGCCACCGCCGCCGGTGCACAACGAGGCAGCGACACGCCCTCCGTCTT
CAACGAAACCCCGGGGGGGGGCGGGGCCGGGTCGCCGCCGTCCGTACCCT
CCGCAGCGACAACAGCCAGCTCACCAGGCGCCTAGACAGGACCCAGCAGC
AGCAGGAGACTCAGCGCAAACGTTTCCGTGCTGTTCACCCCCTCTTGCCC
AAGGCCCGCGCCACCACCGCCACCGCCGCTGCCACCGCCGCCGGTGCACA
ACGAGGCAGCGACACGCCCTCCGTCTTCAACGAAACCCCGGGGGGGGGCG
GGGCCGGG
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