mRNA_S-ischiensis_contig80.19849.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19849.1
Unique NamemRNA_S-ischiensis_contig80.19849.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:694382..694841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.240242-CDS-S-ischiensis_contig80:694381..6948131622817307.240242-CDS-S-ischiensis_contig80:694381..694813Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 694382..694813 +
1695741013.5746758-CDS-S-ischiensis_contig80:694381..6948131695741013.5746758-CDS-S-ischiensis_contig80:694381..694813Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 694382..694813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817307.2516344-UTR-S-ischiensis_contig80:694813..6948411622817307.2516344-UTR-S-ischiensis_contig80:694813..694841Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 694814..694841 +
1695741013.5867195-UTR-S-ischiensis_contig80:694813..6948411695741013.5867195-UTR-S-ischiensis_contig80:694813..694841Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 694814..694841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19849.1prot_S-ischiensis_contig80.19849.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 694382..694813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19849.1

>prot_S-ischiensis_contig80.19849.1 ID=prot_S-ischiensis_contig80.19849.1|Name=mRNA_S-ischiensis_contig80.19849.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
PTGLHTRRQERPCNTPPGAALAGLRRQQTRTTGGRKPHASNAIPRTSSTI
TCANLGVAYPSKQTAGSGTGSVEACGLVNGWGTTPRQAQRGQVLGSTYRT
PLSRAAKTSASPPAAQGTHIPAQQHNAPFRTGAAHCPRTPRVV*
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mRNA from alignment at S-ischiensis_contig80:694382..694841+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19849.1 ID=mRNA_S-ischiensis_contig80.19849.1|Name=mRNA_S-ischiensis_contig80.19849.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=460bp|location=Sequence derived from alignment at S-ischiensis_contig80:694382..694841+ (Schizocladia ischiensis KU_0333)
CCAACAGGCTTGCACACAAGAAGGCAAGAGAGGCCATGCAATACTCCACC
TGGGGCTGCGCTGGCAGGACTGAGAAGGCAACAGACGAGGACCACCGGCG
GAAGGAAACCGCATGCAAGCAACGCTATACCACGCACGAGCAGTACCATA
ACATGCGCTAACTTGGGCGTAGCGTACCCTAGCAAGCAAACCGCCGGCTC
CGGCACCGGCTCAGTCGAGGCGTGTGGTCTGGTCAACGGTTGGGGGACTA
CGCCACGACAAGCCCAGCGTGGGCAAGTACTTGGAAGTACCTATCGCACA
CCCCTCTCGAGAGCCGCAAAGACCTCTGCGAGCCCCCCAGCGGCCCAAGG
AACACACATCCCTGCCCAACAACACAACGCCCCCTTCCGCACCGGCGCCG
CACATTGCCCGCGCACTCCCAGAGTTGTATAACCTACCTAATCCCCCCCC
TCCCTCTCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig80:694382..694841+

>mRNA_S-ischiensis_contig80.19849.1 ID=mRNA_S-ischiensis_contig80.19849.1|Name=mRNA_S-ischiensis_contig80.19849.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig80:694382..694841+ (Schizocladia ischiensis KU_0333)
CCAACAGGCTTGCACACAAGAAGGCAAGAGAGGCCATGCAATACTCCACC
TGGGGCTGCGCTGGCAGGACTGAGAAGGCAACAGACGAGGACCACCGGCG
GAAGGAAACCGCATGCAAGCAACGCTATACCACGCACGAGCAGTACCATA
ACATGCGCTAACTTGGGCGTAGCGTACCCTAGCAAGCAAACCGCCGGCTC
CGGCACCGGCTCAGTCGAGGCGTGTGGTCTGGTCAACGGTTGGGGGACTA
CGCCACGACAAGCCCAGCGTGGGCAAGTACTTGGAAGTACCTATCGCACA
CCCCTCTCGAGAGCCGCAAAGACCTCTGCGAGCCCCCCAGCGGCCCAAGG
AACACACATCCCTGCCCAACAACACAACGCCCCCTTCCGCACCGGCGCCG
CACATTGCCCGCGCACTCCCAGAGTTGTATAACCAACAGGCTTGCACACA
AGAAGGCAAGAGAGGCCATGCAATACTCCACCTGGGGCTGCGCTGGCAGG
ACTGAGAAGGCAACAGACGAGGACCACCGGCGGAAGGAAACCGCATGCAA
GCAACGCTATACCACGCACGAGCAGTACCATAACATGCGCTAACTTGGGC
GTAGCGTACCCTAGCAAGCAAACCGCCGGCTCCGGCACCGGCTCAGTCGA
GGCGTGTGGTCTGGTCAACGGTTGGGGGACTACGCCACGACAAGCCCAGC
GTGGGCAAGTACTTGGAAGTACCTATCGCACACCCCTCTCGAGAGCCGCA
AAGACCTCTGCGAGCCCCCCAGCGGCCCAAGGAACACACATCCCTGCCCA
ACAACACAACGCCCCCTTCCGCACCGGCGCCGCACATTGCCCGCGCACTC
CCAGAGTTGTATAA
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