|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 787 |
| Cds size | 588 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817306.532406-UTR-S-ischiensis_contig80:223061..223259 | 1622817306.532406-UTR-S-ischiensis_contig80:223061..223259 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig80 223062..223259 + |
| 1695741013.1683657-UTR-S-ischiensis_contig80:223061..223259 | 1695741013.1683657-UTR-S-ischiensis_contig80:223061..223259 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig80 223062..223259 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817306.5436163-CDS-S-ischiensis_contig80:223259..223735 | 1622817306.5436163-CDS-S-ischiensis_contig80:223259..223735 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig80 223260..223735 + |
| 1695741013.1819437-CDS-S-ischiensis_contig80:223259..223735 | 1695741013.1819437-CDS-S-ischiensis_contig80:223259..223735 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig80 223260..223735 + |
| 1622817306.5543485-CDS-S-ischiensis_contig80:223973..224085 | 1622817306.5543485-CDS-S-ischiensis_contig80:223973..224085 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig80 223974..224085 + |
| 1695741013.1941097-CDS-S-ischiensis_contig80:223973..224085 | 1695741013.1941097-CDS-S-ischiensis_contig80:223973..224085 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig80 223974..224085 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig80.19819.1 >prot_S-ischiensis_contig80.19819.1 ID=prot_S-ischiensis_contig80.19819.1|Name=mRNA_S-ischiensis_contig80.19819.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=196bp
MRSCHLEEGSLPTLSELPARSRCFSEPARVPGGIDGPLEDSEEPGALFSG
LQLTEQELDELRADIQPYSWPTREGFSALGGDVPAVGLDGQFHHGGDQFY
PDHQQQGPLPAYEERREQHMQKRRRRQELHPWSPAASQLWPRLASVSNSP
SEQEKRQLRLERNRSSARSRRNERQALVASLEEEVAVLEAKVRLLR back to topmRNA from alignment at S-ischiensis_contig80:223062..224085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig80.19819.1 ID=mRNA_S-ischiensis_contig80.19819.1|Name=mRNA_S-ischiensis_contig80.19819.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1024bp|location=Sequence derived from alignment at S-ischiensis_contig80:223062..224085+ (Schizocladia ischiensis KU_0333)
TTCCATGCCTCCTCGTGCCAGCCCAGGCTCCAGCTGGACGGCGCGTCACG
GAGTCAGAGACCAGGATGGGGCAGCCCCTCTCTTCCATGCAGCCCCCTCA
AGGGGCCCTGGGTCGCTTCACACAGCTTTAGCCCAACCACGGCGAACGTT
CCAGCCCACGATGAGCGGGGGGCGTGTTCGTCACCATCCTTCTGAAGCAT
GCGCAGCTGCCACTTGGAGGAGGGGAGCCTGCCCACCCTGAGCGAGTTGC
CCGCACGCAGCCGCTGTTTTTCTGAACCCGCGCGGGTCCCGGGCGGCATT
GACGGCCCCTTGGAGGACAGCGAGGAACCGGGGGCCCTGTTCTCGGGCCT
GCAGCTGACGGAGCAAGAACTCGACGAGCTCAGGGCAGACATCCAGCCCT
ACTCGTGGCCCACTCGCGAGGGGTTTTCCGCGTTAGGAGGGGATGTGCCC
GCAGTTGGCCTGGATGGCCAGTTCCATCATGGCGGTGACCAGTTTTATCC
AGACCACCAGCAGCAAGGGCCACTGCCGGCTTACGAAGAGCGGCGCGAGC
AGCACATGCAGAAGCGGCGCCGGCGCCAGGAGCTTCACCCTTGGTCGCCC
GCCGCCTCACAGCTCTGGCCACGCCTGGCATCGGTATCCAACAGCCCCAG
CGAGCAGGAAAAGCGGCAGCTGAGGTCAGTAGCCGGGCGTCACGCGGGTT
ACCCATGTGGCACCCTAAACCGTGTTGCCGCCTTCATATTTGACCGCTCT
CTCTCCCCCGCACGACCGCAGCGCTCATCCGCTGCGAGACACCGGAGGAA
GATCGAGGCTGCCATGCCCCCCCTCCCCCAAAGGCCCTGACCTGCCGTTC
GCCCCCCCCCCGGGCGTGGTCCTGATGCTCCGCCTGTTTTACCCCGCCCC
CCGCAAACCTAGGCTGGAGCGCAACCGTAGCTCTGCTCGCTCGCGGCGCA
ACGAGCGCCAGGCGCTTGTGGCCAGCCTGGAGGAAGAGGTGGCCGTGCTG
GAAGCAAAGGTCAGGCTTCTGAGA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig80:223062..224085+ >mRNA_S-ischiensis_contig80.19819.1 ID=mRNA_S-ischiensis_contig80.19819.1|Name=mRNA_S-ischiensis_contig80.19819.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1176bp|location=Sequence derived from alignment at S-ischiensis_contig80:223062..224085+ (Schizocladia ischiensis KU_0333)
ATGCGCAGCTGCCACTTGGAGGAGGGGAGCCTGCCCACCCTGAGCGAGTT
GCCCGCACGCAGCCGCTGTTTTTCTGAACCCGCGCGGGTCCCGGGCGGCA
TTGACGGCCCCTTGGAGGACAGCGAGGAACCGGGGGCCCTGTTCTCGGGC
CTGCAGCTGACGGAGCAAGAACTCGACGAGCTCAGGGCAGACATCCAGCC
CTACTCGTGGCCCACTCGCGAGGGGTTTTCCGCGTTAGGAGGGGATGTGC
CCGCAGTTGGCCTGGATGGCCAGTTCCATCATGGCGGTGACCAGTTTTAT
CCAGACCACCAGCAGCAAGGGCCACTGCCGGCTTACGAAGAGCGGCGCGA
GCAGCACATGCAGAAGCGGCGCCGGCGCCAGGAGCTTCACCCTTGGTCGC
CCGCCGCCTCACAGCTCTGGCCACGCCTGGCATCGGTATCCAACAGCCCC
AGCGAGCAGGAAAAGCGGCAGCTGAGATGCGCAGCTGCCACTTGGAGGAG
GGGAGCCTGCCCACCCTGAGCGAGTTGCCCGCACGCAGCCGCTGTTTTTC
TGAACCCGCGCGGGTCCCGGGCGGCATTGACGGCCCCTTGGAGGACAGCG
AGGAACCGGGGGCCCTGTTCTCGGGCCTGCAGCTGACGGAGCAAGAACTC
GACGAGCTCAGGGCAGACATCCAGCCCTACTCGTGGCCCACTCGCGAGGG
GTTTTCCGCGTTAGGAGGGGATGTGCCCGCAGTTGGCCTGGATGGCCAGT
TCCATCATGGCGGTGACCAGTTTTATCCAGACCACCAGCAGCAAGGGCCA
CTGCCGGCTTACGAAGAGCGGCGCGAGCAGCACATGCAGAAGCGGCGCCG
GCGCCAGGAGCTTCACCCTTGGTCGCCCGCCGCCTCACAGCTCTGGCCAC
GCCTGGCATCGGTATCCAACAGCCCCAGCGAGCAGGAAAAGCGGCAGCTG
AGGCTGGAGCGCAACCGTAGCTCTGCTCGCTCGCGGCGCAACGAGCGCCA
GGCGCTTGTGGCCAGCCTGGAGGAAGAGGTGGCCGTGCTGGAAGCAAAGG
TCAGGCTTCTGAGAGCTGGAGCGCAACCGTAGCTCTGCTCGCTCGCGGCG
CAACGAGCGCCAGGCGCTTGTGGCCAGCCTGGAGGAAGAGGTGGCCGTGC
TGGAAGCAAAGGTCAGGCTTCTGAGA back to top
|