mRNA_S-ischiensis_contig80.19816.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig80.19816.1
Unique NamemRNA_S-ischiensis_contig80.19816.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig80.19816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig80contigS-ischiensis_contig80:173075..174480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size401
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig80.19816.1prot_S-ischiensis_contig80.19816.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig80 173075..174468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.4692543-CDS-S-ischiensis_contig80:173074..1731201622817306.4692543-CDS-S-ischiensis_contig80:173074..173120Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 173075..173120 -
1695741013.1173494-CDS-S-ischiensis_contig80:173074..1731201695741013.1173494-CDS-S-ischiensis_contig80:173074..173120Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 173075..173120 -
1622817306.481812-CDS-S-ischiensis_contig80:173566..1737621622817306.481812-CDS-S-ischiensis_contig80:173566..173762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 173567..173762 -
1695741013.1303353-CDS-S-ischiensis_contig80:173566..1737621695741013.1303353-CDS-S-ischiensis_contig80:173566..173762Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 173567..173762 -
1622817306.492095-CDS-S-ischiensis_contig80:174323..1744681622817306.492095-CDS-S-ischiensis_contig80:174323..174468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 174324..174468 -
1695741013.1397657-CDS-S-ischiensis_contig80:174323..1744681695741013.1397657-CDS-S-ischiensis_contig80:174323..174468Schizocladia ischiensis KU_0333CDSS-ischiensis_contig80 174324..174468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.5026336-UTR-S-ischiensis_contig80:174468..1744801622817306.5026336-UTR-S-ischiensis_contig80:174468..174480Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 174469..174480 -
1695741013.151072-UTR-S-ischiensis_contig80:174468..1744801695741013.151072-UTR-S-ischiensis_contig80:174468..174480Schizocladia ischiensis KU_0333UTRS-ischiensis_contig80 174469..174480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig80.19816.1

>prot_S-ischiensis_contig80.19816.1 ID=prot_S-ischiensis_contig80.19816.1|Name=mRNA_S-ischiensis_contig80.19816.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=129bp
MLCPGRSPWKLAGRLGGGQKTAARVGKPAHPGAAGRPRRSWGPPCTPPET
LSTTTTTTPPARPTTLGTPEDPAPGQAYRAQPSPRAWAPENLQDTPGSQA
LGAGPGAPGPSTRRNSSTLSLGLRPGEGT
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mRNA from alignment at S-ischiensis_contig80:173075..174480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig80.19816.1 ID=mRNA_S-ischiensis_contig80.19816.1|Name=mRNA_S-ischiensis_contig80.19816.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1406bp|location=Sequence derived from alignment at S-ischiensis_contig80:173075..174480- (Schizocladia ischiensis KU_0333)
TCCGAAGGGTGGATGCTCTGCCCGGGCCGATCGCCGTGGAAGTTGGCGGG
CAGGCTCGGGGGCGGGCAGAAGACCGCGGCCCGGGTGGGGAAGCCCGCGC
ATCCCGGCGCGGCAGGGCGGCCTCGCCGGAGTTGGGGTCCCCCATGCACT
CCCCCAGGTGTGTACCTGAGCGCGTGGGTAAGCTGCCCTTCCCACGATGC
CCCCGTGAAGCAGGCTCCCGGGCCGCGTGGCTCTGCCGAATACTTGTAAG
AGTAGAAGTATTGAGGTGTGCCTCGGTGCCTGATATCCTCAAAAACCAAT
TTTGAGCCTGGCTCCAGAGGTGCCCCCCGAAGTGCCAGAGGTTGGCAATG
TATTCCCCAATTAATTGCAGGATCGTTGTGCCGTGTCTGCGGATTAAAAT
GTTGTAGCCATGTGCACTGTGCCACGGCGGCGATCGCAAAGAGCGAACCT
TTGTTTTGCAGACAGGTGTGCCAGCCATTCGTTGTCCAGTGCCAAGGCGG
TGATGGTGGCCGCCTGTACATACACGTTTCCTCCTGGCCTTCTAGAGCTG
CAGTTGGTCAAGTACCCTATGGCTCTACACCCTTGGCGTCATCCAATGGA
CTTGCTGTGTGCATGCAGGATCTGTTCAACTACTACTCCGCCCCCCTCCA
CCTCCTCCTTTTCTCCCCTTCCCCACACAAACTTCCTCCACCTCCTCCTT
TTCTCCCCTTCCCCACAGAAACTCTTTCGACAACGACAACAACAACCCCA
CCCGCCAGACCAACAACCCTGGGCACTCCCGAGGATCCGGCTCCTGGGCA
GGCGTACCGGGCCCAGCCCTCGCCCCGGGCCTGGGCCCCCGAGAACCTCC
AGGACACTCCAGGGTCTCAGGCTCTTGGGGCGGGCCCGGGCGCCCCCGGG
CCCAGCACCCGCAGGTAACCATGGCGCAAAAGTGCGATTTTTTTTTTGTA
AGTACTTCGAGTACGAAGTAGCTTATTGCGATATCGAAAATTTTCGCCCA
AATTGCAATCGGTCACCGGCCCAAATATCGAAAAGGGCCGGGCCTAGCCC
TGGGCCCGGGCCCGGGCCCCCGAGAACCTCCAGGACACTCCAGGGCCTTA
GGCTCGTGGGGCGGGCCCGGGCGCCCCCGGGCCCGGCACCTGCAGGAAAC
CACGGCACAAAAGTTCGATTTTCTTTTGCCCAAATATATTTTTCGGCGTC
GAAGGGAGGCCCGAAAGACTTGCCCGAAAAAAAATATCGATACTTTCCCA
AACATGTAGTACTTCGTATATACTGATTTTGCTTGGCTTGCGGCCCCAAA
CTGCCTCTTTTTTTACATAAACGTCGCGCTTTTGTGCCGTGACTACTGTA
CCACCCGCAGGAACTCGAGCACCCTATCCCTGGGTCTTCGGCCCGGCGAA
GGCACC
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Coding sequence (CDS) from alignment at S-ischiensis_contig80:173075..174480-

>mRNA_S-ischiensis_contig80.19816.1 ID=mRNA_S-ischiensis_contig80.19816.1|Name=mRNA_S-ischiensis_contig80.19816.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=774bp|location=Sequence derived from alignment at S-ischiensis_contig80:173075..174480- (Schizocladia ischiensis KU_0333)
ATGCTCTGCCCGGGCCGATCGCCGTGGAAGTTGGCGGGCAGGCTCGGGGG
CGGGCAGAAGACCGCGGCCCGGGTGGGGAAGCCCGCGCATCCCGGCGCGG
CAGGGCGGCCTCGCCGGAGTTGGGGTCCCCCATGCACTCCCCCAGATGCT
CTGCCCGGGCCGATCGCCGTGGAAGTTGGCGGGCAGGCTCGGGGGCGGGC
AGAAGACCGCGGCCCGGGTGGGGAAGCCCGCGCATCCCGGCGCGGCAGGG
CGGCCTCGCCGGAGTTGGGGTCCCCCATGCACTCCCCCAGAAACTCTTTC
GACAACGACAACAACAACCCCACCCGCCAGACCAACAACCCTGGGCACTC
CCGAGGATCCGGCTCCTGGGCAGGCGTACCGGGCCCAGCCCTCGCCCCGG
GCCTGGGCCCCCGAGAACCTCCAGGACACTCCAGGGTCTCAGGCTCTTGG
GGCGGGCCCGGGCGCCCCCGGGCCCAGCACCCGCAGAAACTCTTTCGACA
ACGACAACAACAACCCCACCCGCCAGACCAACAACCCTGGGCACTCCCGA
GGATCCGGCTCCTGGGCAGGCGTACCGGGCCCAGCCCTCGCCCCGGGCCT
GGGCCCCCGAGAACCTCCAGGACACTCCAGGGTCTCAGGCTCTTGGGGCG
GGCCCGGGCGCCCCCGGGCCCAGCACCCGCAGGAACTCGAGCACCCTATC
CCTGGGTCTTCGGCCCGGCGAAGGCACCGAACTCGAGCACCCTATCCCTG
GGTCTTCGGCCCGGCGAAGGCACC
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