mRNA_S-ischiensis_contig8.19805.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19805.1
Unique NamemRNA_S-ischiensis_contig8.19805.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A4C1TVN1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TVN1_EUMVA)

HSP 1 Score: 167 bits (423), Expect = 1.070e-43
Identity = 100/295 (33.90%), Postives = 156/295 (52.88%), Query Frame = 1
Query:   10 WHRRLGHLGREALERL--AAEPGSGMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQR-LELVGVDLCGPHSV-TAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLD 882
            WHRRLGH+    L+++   A  G     +     + C  C   K  RLP     +  P +  + L+LV  DLCGP  V + G   Y  +F D A+RM  V+ L+ K Q ++    +   V   +G  IK LRTD   E  +       +++GI  + + PY+ +QNG  ER    +V RAR +L  + + +ELWAEA+    Y+ NR P   LG  +P++ W+G  P+LGH++ FG  A +H+ P+ +  K+  + ++  LVGYS  ++ YR+Y P+ ++ I  SR V  +E  D
Sbjct:   80 WHRRLGHVNSNDLQKMKNGAVEGVSYDTKADIQKSNCEVCCEGKQARLPF----KLAPHRRNKVLDLVHSDLCGPMEVRSVGQARYFLLFVDDASRMAFVYFLKEKNQVLQHFKEFHSMVRNQKGTKIKTLRTDNGGEFCSDMMEKYLKESGIIHQKTNPYTPEQNGLCERFNRTIVERARCLLFDAKMEKELWAEAVNTAVYLKNRSPASGLGQITPIEMWTGCKPDLGHIRVFGSPAMIHV-PKAKRLKWDKKAVKYILVGYSENTKGYRLYNPE-TKKICTSRDVIIMERSD 368          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A8J5SNI2_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SNI2_ZIZPA)

HSP 1 Score: 164 bits (416), Expect = 1.190e-42
Identity = 108/295 (36.61%), Postives = 142/295 (48.14%), Query Frame = 1
Query:   10 WHRRLGHLGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGPHS-VTAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLDRD 888
            WH R GH+   AL +LA E    G+   G  D   C  C A K RR P P  A+ +    +RLELV  DLCGP S  T     Y  +  D  +R   V  +  K +A  A+   +       G  +K LRTD   E  A  FA  C   G+H +H+APYS QQNG  ER  G +V  ARSML A GLP   W EA++   Y+ NR P + +   +P + W G  P + H + FG + +V     +   K   R  +   VGY   S+AYR Y P   R + ++R V F E    D
Sbjct:  342 WHERFGHVNMAALRKLAREELVRGLPELGQVDQL-CEACQAGKQRRTPFP--AQAEYRAQRRLELVHGDLCGPISPATPRGNKYFLLMVDDLSRYMWVAAIPSKDRAAAAIKEVLVRAEGESGVKLKVLRTDRGGEFTASEFAEYCAAKGVHRQHTAPYSPQQNGVVERRNGTVVSTARSMLKAKGLPGWFWGEAMSTAVYVLNRCPTKSVDGMTPFEAWHGRKPAVHHFRTFGCIVYVRDTTPHLK-KLDDRGRKMIFVGYERGSKAYRAYDPITKR-VHVTRDVVFDEQAQWD 631          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A4C1WX63_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1WX63_EUMVA)

HSP 1 Score: 166 bits (419), Expect = 2.180e-42
Identity = 106/292 (36.30%), Postives = 154/292 (52.74%), Query Frame = 1
Query:    7 TWHRRLGHLGREALERLAAEPG-SGMKVQGTFDPAR-CGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGPHSVTAGSGL-YAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIE 873
            TWH RLGH+  + ++ + A     G+K+    + +  C  C   K  R P  +  R +   LQ  +L+  D+CGP S T+  G+ Y  +F D AT  RHV+ ++ K   +E   +Y   V      +I+ L TD  +E     F    ++ GI  E +APY+ +QNG AER +  +V  ARSML A  LP +LWAEA+    YI NR        K+P + W+GT PELGHLK FG + +VH+  Q R  K   +  +  L+GY   +  YR+Y   + + I ISR+V F E
Sbjct:  253 TWHERLGHINLKEIKSMCANNVVEGLKINEVDEKSFVCEACAYGKQCRFPFRKSVRGEG--LQPGDLIYSDVCGPMSHTSVQGMRYFVLFKDAATSHRHVYFIKNKSDVLEVFKKYNCIVKNKYMHNIRILHTDNGREYVNKVFKEYLDKEGIVHELTAPYTPEQNGRAEREIRTIVESARSMLYARDLPLDLWAEAVNCAVYILNRTSSSQTPGKTPYELWNGTKPELGHLKVFGSIGYVHVPDQLRT-KLEKKSEKMLLIGYDNTN--YRMYDMNK-KTIKISRNVIFDE 538          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A6H5GQB6_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GQB6_9HEMI)

HSP 1 Score: 162 bits (411), Expect = 3.240e-41
Identity = 105/294 (35.71%), Postives = 147/294 (50.00%), Query Frame = 1
Query:    7 TWHRRLGHLGREALERLAAEPGS--GMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGP-HSVTAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETL 879
            TWHR++ H+  EA  ++A +  S  G+          C  CL  K  +LP P   R  P KL  LE+V  D+CGP  +++ G   Y   F D A+R   V+ L++K + +E   +Y R      G  +K L++D   E     F    ++ GI    S  ++ QQNG AER    L  +AR +L+   LP ELWAEAI    YI NR P R L   +P + W    P + HL  FG   ++ L      GKF AR   G  VGYS  S+AYRI+ P  +R I ++R V  ++ L
Sbjct:  435 TWHRKMAHI-NEAELKIAQKNKSLNGLYFDSNSKLGECEVCLQGKLAKLPFP--TRETPKKLDILEIVHTDVCGPMRTISPGGARYFVTFIDEASRYCKVYFLKQKSEVLEVFKQYKREAERSTGAKLKYLQSDNGTEYINKEFDNYLKEKGIQRRLSTVHTPQQNGLAERRNRTLQDKARCLLIDGKLPAELWAEAIFTANYINNRTPSRTLNHITPFEKWVKRPPSVRHLHIFGSKVYI-LNKNPNKGKFDARATEGVFVGYSEVSKAYRIWMPL-TRQIEVTRDVRVLKDL 723          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A6H5HPK5_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HPK5_9HEMI)

HSP 1 Score: 162 bits (410), Expect = 4.270e-41
Identity = 105/294 (35.71%), Postives = 147/294 (50.00%), Query Frame = 1
Query:    7 TWHRRLGHLGREALERLAAEPGS--GMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGP-HSVTAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETL 879
            TWHR++ H+  EA  ++A +  S  G+          C  CL  K  +LP P   R  P KL  LE+V  D+CGP  +++ G   Y   F D A+R   V+ L++K + +E   +Y R      G  +K L++D   E     F    ++ GI    S  ++ QQNG AER    L  +AR +L+   LP ELWAEAI    YI NR P R L   +P + W    P + HL  FG   ++ L      GKF AR   G  VGYS  S+AYRI+ P  +R I ++R V  ++ L
Sbjct:  410 TWHRKMAHI-NEAELKIAQKNKSLNGLYFDSNSKLGECEVCLQGKLAKLPFP--TRETPKKLDILEIVHTDVCGPMRTISPGGARYFVTFIDEASRYCKVYFLKQKSEVLEVFKQYKREAERSTGAKLKYLQSDNGTEYINKEFDNYLKEKGIQRRLSTVHTPQQNGLAERRNRTLQDKARCLLIDGKLPAELWAEAIFTANYINNRTPSRTLNHITPFEKWVKRPPSVRHLHIFGSKVYI-LNKNPNKGKFDARATEGVFVGYSEVSKAYRIWMPL-TRKIEVTRDVRVLKDL 698          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A7I8K9S9_SPIIN (Hypothetical protein n=7 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K9S9_SPIIN)

HSP 1 Score: 160 bits (406), Expect = 8.750e-41
Identity = 109/301 (36.21%), Postives = 148/301 (49.17%), Query Frame = 1
Query:   10 WHRRLGHLGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGPHSVTAGSGL-YAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFV-HLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLDRDVANGA 903
            WH RLGH+   AL ++A E    G+   G  D   C  CLA K +R P P+       +   LELV  DLCGP +    +G  Y  +  D  +R   V +L  K +A  A+           G  +  LRTD   E  +  FA      GIH +H+APYS QQNG  ER  G +V  ARSML A GLP   W EA+    YI NR P++ +   +P + W G  P + HLK FG +A+V +  P  +  K   R  +   +GY   S+AY+ Y P  +R + ++R V F E    D  +GA
Sbjct:  489 WHARLGHVNMTALRKMAREELVRGLPAVGPVDQL-CEACLAGKQKRSPFPQQGEYRARR--GLELVHSDLCGPIAPETPNGSKYFLLLVDDRSRYMWVAMLPSKDRAAVAIKEIKARAEGESGLKLGALRTDRGGEFTSHEFAEYYAGEGIHHQHTAPYSPQQNGIVERRNGTVVATARSMLKAKGLPGWFWGEAVATAVYILNRCPMKSVDGMTPFEVWHGKKPAVHHLKVFGCIAYVLNTTPHLK--KLEDRGRKMIFIGYEYGSKAYQAYDPT-TRRVHVTRDVVFDENAQWDWGSGA 783          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A8J6HKX6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HKX6_TENMO)

HSP 1 Score: 160 bits (404), Expect = 2.340e-40
Identity = 103/299 (34.45%), Postives = 150/299 (50.17%), Query Frame = 1
Query:    1 AATWHRRLGHLGREALERLAAEPGSGMKVQGTF-------DPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGP-HSVTAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIE 873
            A TWHRRLGH+    LER+      G  V+G F         + C  C   K  RLP P  A     KL  LE+V  DLCGP  + + G   Y  +F D A+RM  V+ L+ K QA++    +   V       IK LRTD   E  +    +  +  GI  + + PY+ +QNG  ER    +V RA+ +L  + L +  WAEA+    Y+ NR P   LG  +P + W+G  P++ H++ FG  A VH+ P+ +  K+  +  +   VGY    + YR+Y P+ +R +T SR V  +E
Sbjct:  447 AKTWHRRLGHINSNDLERM-----KGGAVEGVFYNEKADIQKSNCQVCCEGKQTRLPFPS-ANHRSKKL--LEVVHSDLCGPMETKSIGQAKYFLLFVDDASRMSFVYFLKEKNQALQRFKEFRGMVENQTESKIKTLRTDNGGEFCSQQMESYLKAAGITHQKTNPYTPEQNGLCERFNRTIVERAKCLLFEAELDKSFWAEAVNTAVYLKNRSPASGLGQMTPFERWTGRKPDVSHVRVFGSPAMVHI-PKNKRQKWDKKATKYIFVGYPENVKGYRLYNPK-TRQVTTSRDVIIME 735          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: A0A8J6HWA5_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HWA5_TENMO)

HSP 1 Score: 159 bits (403), Expect = 3.250e-40
Identity = 101/294 (34.35%), Postives = 148/294 (50.34%), Query Frame = 1
Query:    1 AATWHRRLGHLGREALERL--AAEPGSGMKVQGTFDPARCGTCLAAKSRRLPHPRWARTDPAKLQRLELVGVDLCGP-HSVTAGSGLYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIE 873
            A TWHRRLGH+    LER+   A  G     +     + C  C   K  RLP P  A     KL  LE+V  DLCGP  + + G   Y  +F D A+RM  V+ L+ K QA++    +   V       IK LRTD   E  +    +  +  GI  + + PY+ +QNG  ER    +V RA+ +L  + L +  WAEA+    Y+ NR P   LG  +P + W+G  P++ H++ FG  A VH+ P+ +  K+  +  +   VGY    + YR+Y P+ +R +T SR V  +E
Sbjct:  388 AKTWHRRLGHINSNDLERMKEGAVEGVFYNEKADIQKSNCQVCCEGKQTRLPFPS-ANHRSKKL--LEVVHSDLCGPMETKSIGQAKYFLLFVDDASRMSFVYFLKEKNQALQRFKEFRGMVEHQTESKIKTLRTDNGGEFCSQQMESYLKAAGITHQKTNPYTPEQNGLCERFNRTIVERAKCLLFEAELDKSFWAEAVNTAVYLKNRSPASGLGQMTPFERWTGRKPDVSHVRVFGSPAMVHI-PKNKRQKWDKKATKYIFVGYPENVKGYRLYNPK-TRQVTTSRDVIIME 676          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: B8BH06_ORYSI (Integrase catalytic domain-containing protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8BH06_ORYSI)

HSP 1 Score: 156 bits (395), Expect = 3.980e-39
Identity = 112/298 (37.58%), Postives = 145/298 (48.66%), Query Frame = 1
Query:   10 WHRRLGHLGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRWA--RTDPAKLQRLELVGVDLCGPHSVTAGSG-LYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLE-PQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLDRD 888
            WH RLGH+    L ++  E    G+      D   C  CLA K RR P PR A  R+D    + L L+  DLCGP +    SG  Y  +  D  +R   V +L  K  A  A+ R         GR ++ LRTD   E  +  FA  C + G+  E +APYS QQNG  ER    +VG ARSML A GLP   W EAI    Y+ NR   + +G K+P   W+G  P + HL+ FG VA V    P  +     +R +    VGY   S+AYR Y P  +R + ISR + F E    D
Sbjct:  151 WHARLGHINFRVLCKMGKEELVRGLPCLSQVDQV-CEACLAGKHRRSPFPRQALCRSD----EPLALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRIQAAAERKSGRKLRALRTDRGGEFTSTQFAEYCAELGMRRELTAPYSPQQNGVVERRNQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIGGKTPYALWNGVPPAVHHLRTFGCVAHVKTTTPNLKKLDDRSRPMI--FVGYEPGSKAYRAYDPA-TRRVHISRDIVFDEAAQWD 440          
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Match: Q7FAB9_ORYSJ (OSJNBa0033H08.2 protein n=8 Tax=Oryza sativa TaxID=4530 RepID=Q7FAB9_ORYSJ)

HSP 1 Score: 156 bits (395), Expect = 4.290e-39
Identity = 113/298 (37.92%), Postives = 145/298 (48.66%), Query Frame = 1
Query:   10 WHRRLGHLGREALERLAAEP-GSGMKVQGTFDPARCGTCLAAKSRRLPHPRWA--RTDPAKLQRLELVGVDLCGPHSVTAGSG-LYAAIFYDYATRMRHVHILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQNGIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITATTYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLE-PQYRDGKFTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLDRD 888
            WH RLGH+   AL ++  E    G+      D   C  CLA K RR P PR A  R+D      L L+  DLCGP +    SG  Y  +  D  +R   V +L  K  A  A+ R         GR ++ LRTD   E  +  FA  C + G+  E +APYS QQNG  ER    +VG ARSML A GLP   W EAI    Y+ NR   + +G K+P   W+G  P + HL+ FG VA V    P  +     +R +    VGY   S+AYR Y P  +R + ISR + F E    D
Sbjct:  552 WHARLGHINFRALCKMGKEELVRGLPCLSQVDQV-CEACLAGKHRRSPFPRQALCRSDVP----LALLHGDLCGPITPATPSGNRYFLLLVDDYSRYMWVALLSTKDAAPAAIKRTQAAAERKSGRKLRALRTDRGGEFTSTQFAEYCAELGMRRELTAPYSPQQNGVVERRNQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIGGKTPYALWNGVPPAVHHLRTFGCVAHVKTTTPNLKKLDDRSRPMI--FVGYEPGSKAYRAYDPA-TRRVHISRDIVFDEAAQWD 841          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4C1TVN1_EUMVA1.070e-4333.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5SNI2_ZIZPA1.190e-4236.61Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A4C1WX63_EUMVA2.180e-4236.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5GQB6_9HEMI3.240e-4135.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5HPK5_9HEMI4.270e-4135.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A7I8K9S9_SPIIN8.750e-4136.21Hypothetical protein n=7 Tax=Spirodela intermedia ... [more]
A0A8J6HKX6_TENMO2.340e-4034.45Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6HWA5_TENMO3.250e-4034.35Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
B8BH06_ORYSI3.980e-3937.58Integrase catalytic domain-containing protein n=1 ... [more]
Q7FAB9_ORYSJ4.290e-3937.92OSJNBa0033H08.2 protein n=8 Tax=Oryza sativa TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:4153549..4154466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score166.8
Seed ortholog evalue1.6e-38
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size918
Cds size918
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817306.13625-CDS-S-ischiensis_contig8:4153548..41544661622817306.13625-CDS-S-ischiensis_contig8:4153548..4154466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4153549..4154466 -
1695741012.9029484-CDS-S-ischiensis_contig8:4153548..41544661695741012.9029484-CDS-S-ischiensis_contig8:4153548..4154466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 4153549..4154466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19805.1prot_S-ischiensis_contig8.19805.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 4153549..4154466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19805.1

>prot_S-ischiensis_contig8.19805.1 ID=prot_S-ischiensis_contig8.19805.1|Name=mRNA_S-ischiensis_contig8.19805.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=306bp
AATWHRRLGHLGREALERLAAEPGSGMKVQGTFDPARCGTCLAAKSRRLP
HPRWARTDPAKLQRLELVGVDLCGPHSVTAGSGLYAAIFYDYATRMRHVH
ILERKLQAVEALDRYIRTVGLPEGRHIKRLRTDGVQELAAGAFAALCEQN
GIHLEHSAPYSQQQNGGAERSVGILVGRARSMLVASGLPQELWAEAITAT
TYITNRLPVRDLGWKSPLQCWSGTVPELGHLKEFGKVAFVHLEPQYRDGK
FTARVLRGRLVGYSTCSRAYRIYTPQRSRHITISRHVSFIETLDRDVANG
APTLAG
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mRNA from alignment at S-ischiensis_contig8:4153549..4154466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19805.1 ID=mRNA_S-ischiensis_contig8.19805.1|Name=mRNA_S-ischiensis_contig8.19805.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig8:4153549..4154466- (Schizocladia ischiensis KU_0333)
GCGGCGACGTGGCATCGCCGCCTGGGCCACCTTGGACGTGAAGCGCTGGA GCGCTTGGCGGCCGAGCCGGGCTCGGGTATGAAGGTGCAGGGCACCTTCG ACCCGGCCCGGTGCGGCACTTGCCTGGCGGCAAAGAGCCGCAGGCTGCCG CACCCACGGTGGGCGCGGACAGACCCTGCGAAGCTGCAACGTCTGGAGCT GGTGGGGGTGGACTTGTGTGGGCCACACTCAGTTACGGCTGGGAGTGGGC TCTATGCTGCCATCTTCTACGACTACGCGACCAGGATGCGCCACGTGCAC ATTTTGGAGCGCAAGTTGCAGGCAGTGGAGGCACTGGACCGGTACATCCG CACAGTGGGGCTGCCAGAGGGCCGGCACATCAAGCGTCTCCGCACTGACG GTGTGCAGGAGCTGGCGGCGGGAGCGTTTGCGGCACTGTGCGAGCAGAAC GGCATCCATCTGGAGCACTCCGCCCCCTACTCCCAGCAGCAGAACGGCGG GGCGGAGCGCTCGGTCGGCATCTTGGTCGGCCGGGCGAGGAGCATGCTGG TGGCCTCTGGCCTGCCGCAGGAGCTGTGGGCGGAGGCCATCACTGCCACC ACTTACATCACCAACCGTCTTCCTGTCCGTGATCTGGGCTGGAAGTCCCC ACTGCAGTGCTGGAGCGGGACTGTGCCGGAGCTGGGTCACCTGAAGGAGT TCGGCAAAGTGGCGTTTGTGCACTTGGAGCCCCAGTACCGTGATGGCAAG TTCACGGCACGGGTCCTCCGGGGGCGCCTGGTGGGCTACAGCACGTGCAG CCGGGCCTACCGGATTTATACTCCGCAGCGCTCGCGTCACATCACCATCT CCCGCCACGTCTCCTTCATTGAGACGCTCGACCGCGATGTGGCCAACGGC GCCCCCACCCTGGCGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:4153549..4154466-

>mRNA_S-ischiensis_contig8.19805.1 ID=mRNA_S-ischiensis_contig8.19805.1|Name=mRNA_S-ischiensis_contig8.19805.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1836bp|location=Sequence derived from alignment at S-ischiensis_contig8:4153549..4154466- (Schizocladia ischiensis KU_0333)
GCGGCGACGTGGCATCGCCGCCTGGGCCACCTTGGACGTGAAGCGCTGGA
GCGCTTGGCGGCCGAGCCGGGCTCGGGTATGAAGGTGCAGGGCACCTTCG
ACCCGGCCCGGTGCGGCACTTGCCTGGCGGCAAAGAGCCGCAGGCTGCCG
CACCCACGGTGGGCGCGGACAGACCCTGCGAAGCTGCAACGTCTGGAGCT
GGTGGGGGTGGACTTGTGTGGGCCACACTCAGTTACGGCTGGGAGTGGGC
TCTATGCTGCCATCTTCTACGACTACGCGACCAGGATGCGCCACGTGCAC
ATTTTGGAGCGCAAGTTGCAGGCAGTGGAGGCACTGGACCGGTACATCCG
CACAGTGGGGCTGCCAGAGGGCCGGCACATCAAGCGTCTCCGCACTGACG
GTGTGCAGGAGCTGGCGGCGGGAGCGTTTGCGGCACTGTGCGAGCAGAAC
GGCATCCATCTGGAGCACTCCGCCCCCTACTCCCAGCAGCAGAACGGCGG
GGCGGAGCGCTCGGTCGGCATCTTGGTCGGCCGGGCGAGGAGCATGCTGG
TGGCCTCTGGCCTGCCGCAGGAGCTGTGGGCGGAGGCCATCACTGCCACC
ACTTACATCACCAACCGTCTTCCTGTCCGTGATCTGGGCTGGAAGTCCCC
ACTGCAGTGCTGGAGCGGGACTGTGCCGGAGCTGGGTCACCTGAAGGAGT
TCGGCAAAGTGGCGTTTGTGCACTTGGAGCCCCAGTACCGTGATGGCAAG
TTCACGGCACGGGTCCTCCGGGGGCGCCTGGTGGGCTACAGCACGTGCAG
CCGGGCCTACCGGATTTATACTCCGCAGCGCTCGCGTCACATCACCATCT
CCCGCCACGTCTCCTTCATTGAGACGCTCGACCGCGATGTGGCCAACGGC
GCCCCCACCCTGGCGGGGGCGGCGACGTGGCATCGCCGCCTGGGCCACCT
TGGACGTGAAGCGCTGGAGCGCTTGGCGGCCGAGCCGGGCTCGGGTATGA
AGGTGCAGGGCACCTTCGACCCGGCCCGGTGCGGCACTTGCCTGGCGGCA
AAGAGCCGCAGGCTGCCGCACCCACGGTGGGCGCGGACAGACCCTGCGAA
GCTGCAACGTCTGGAGCTGGTGGGGGTGGACTTGTGTGGGCCACACTCAG
TTACGGCTGGGAGTGGGCTCTATGCTGCCATCTTCTACGACTACGCGACC
AGGATGCGCCACGTGCACATTTTGGAGCGCAAGTTGCAGGCAGTGGAGGC
ACTGGACCGGTACATCCGCACAGTGGGGCTGCCAGAGGGCCGGCACATCA
AGCGTCTCCGCACTGACGGTGTGCAGGAGCTGGCGGCGGGAGCGTTTGCG
GCACTGTGCGAGCAGAACGGCATCCATCTGGAGCACTCCGCCCCCTACTC
CCAGCAGCAGAACGGCGGGGCGGAGCGCTCGGTCGGCATCTTGGTCGGCC
GGGCGAGGAGCATGCTGGTGGCCTCTGGCCTGCCGCAGGAGCTGTGGGCG
GAGGCCATCACTGCCACCACTTACATCACCAACCGTCTTCCTGTCCGTGA
TCTGGGCTGGAAGTCCCCACTGCAGTGCTGGAGCGGGACTGTGCCGGAGC
TGGGTCACCTGAAGGAGTTCGGCAAAGTGGCGTTTGTGCACTTGGAGCCC
CAGTACCGTGATGGCAAGTTCACGGCACGGGTCCTCCGGGGGCGCCTGGT
GGGCTACAGCACGTGCAGCCGGGCCTACCGGATTTATACTCCGCAGCGCT
CGCGTCACATCACCATCTCCCGCCACGTCTCCTTCATTGAGACGCTCGAC
CGCGATGTGGCCAACGGCGCCCCCACCCTGGCGGGG
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