mRNA_S-ischiensis_contig8.19781.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19781.1
Unique NamemRNA_S-ischiensis_contig8.19781.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19781.1 vs. uniprot
Match: A0A6H5L5W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.890e-22
Identity = 58/144 (40.28%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:    7 ATRETLLADGGVDLIILVINRFLEDPGV-CEFGCWALAAFAGDCDEDGKDEPF--QSHLATRGGLQAAVNILTAHPDSQLLRHEGLLVGLATVQGNPETTEQARLLGFHRH-AQEGVRRWLDDTRLVNLACWLLHELFGPYTHL 426
            A+RE LL   G++L I ++N+F E+  V CE+GCWALA FAG+ D D     F  Q  +   GGL A    + AH DS  LR  G+    A V  N  T  Q   L  H   A++ +RRW +D  L  LACW+L  +  P + L
Sbjct:  158 ASRERLLECRGIELFIQIVNKFCEEDRVLCEYGCWALAVFAGEGDSDSDPSVFRFQEAVVEAGGLAAVGYAVDAHRDSAQLRRYGVSALAAIVHENASTAGQLHSLNLHATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRL 301
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BLAST of mRNA_S-ischiensis_contig8.19781.1 vs. uniprot
Match: D7G2D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2D6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.640e-20
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:    7 ATRETLLADGGVDLIILVINRFLE-DPGVCEFGCWALAAFAGDCDEDGKDEP----FQSHLATRGGLQAAVNILTAHPDSQLLRHEGLLVGLATVQGNPETTEQARLLGFHRH-AQEGVRRWLDDTRLVNLACWLLHELFGPYTHL 426
            A+RE LL   G++L +L++++F E D  +CE+GCWALA FAG+        P    FQ  +   GGL A    + AHPDS  LR  G+    A V  N  T  Q   L      A++ +RRW +D  L  LACW+L  +  P + L
Sbjct:  140 ASREGLLECRGIELFVLIVSKFCEEDRLLCEYGCWALAVFAGEGXXXXXXXPSVFRFQEAVVEAGGLAAVGCAVDAHPDSAQLRRCGVSALAAIVHDNASTAGQLHSLNLQATVAEDSIRRWPNDPELSCLACWVLRSVVEPPSRL 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5W5_9PHAE4.890e-2240.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2D6_ECTSI3.640e-2038.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3927477..3929186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size511
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817303.7757463-CDS-S-ischiensis_contig8:3927476..39277071622817303.7757463-CDS-S-ischiensis_contig8:3927476..3927707Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3927477..3927707 -
1695741010.9542994-CDS-S-ischiensis_contig8:3927476..39277071695741010.9542994-CDS-S-ischiensis_contig8:3927476..3927707Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3927477..3927707 -
1622817303.7892659-CDS-S-ischiensis_contig8:3928907..39291861622817303.7892659-CDS-S-ischiensis_contig8:3928907..3929186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3928908..3929186 -
1695741010.967041-CDS-S-ischiensis_contig8:3928907..39291861695741010.967041-CDS-S-ischiensis_contig8:3928907..3929186Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3928908..3929186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19781.1prot_S-ischiensis_contig8.19781.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3927477..3929186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19781.1

>prot_S-ischiensis_contig8.19781.1 ID=prot_S-ischiensis_contig8.19781.1|Name=mRNA_S-ischiensis_contig8.19781.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
CSATRETLLADGGVDLIILVINRFLEDPGVCEFGCWALAAFAGDCDEDGK
DEPFQSHLATRGGLQAAVNILTAHPDSQLLRHEGLLVGLATVQGNPETTE
QARLLGFHRHAQEGVRRWLDDTRLVNLACWLLHELFGPYTHLLQMSLGDS
HAAAAAGGPAQARDIATADY
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mRNA from alignment at S-ischiensis_contig8:3927477..3929186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19781.1 ID=mRNA_S-ischiensis_contig8.19781.1|Name=mRNA_S-ischiensis_contig8.19781.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1710bp|location=Sequence derived from alignment at S-ischiensis_contig8:3927477..3929186- (Schizocladia ischiensis KU_0333)
TGTTCCGCAACCCGTGAGACCCTCTTGGCGGACGGTGGGGTGGATCTCAT
CATCCTTGTCATCAACCGGTTCTTAGAAGACCCTGGGGTGTGCGAATTTG
GCTGCTGGGCCCTGGCGGCGTTTGCCGGGGACTGCGATGAGGACGGCAAG
GACGAGCCCTTCCAGTCCCACCTGGCCACCAGGGGGGGATTGCAGGCCGC
CGTGAACATTTTGACGGCCCACCCGGATTCGCAGCTGCTGCGGCACGAGG
GGCTCTTGGTGGGGTTGGCGACAGTGCAGGTACTTCCAAGTAATATTGTA
GCGCAATCGGAGCTTGAAATCTGCGGGCACGTGTTCACTGCGCTTTTCTA
CAGTGCGAAGTACATGCATTGCATACTACACTGCAGCGTGTGATATGGGA
ACAGGGATAATTTTTACTTGTTTACTTCGAAGTACGTACTATGTACAGAG
TACCGTGTTGCCGGAAGTACTGCAACAGTATCCTACTGCATTCCTTTGCA
GTTGTGTTCTGTAGTGGGTTGTGAGTGAATAGCAAGCGAAGTGCTGTCAA
CGTCGCTAATGACCTGGCTCGTGTGTACAGTACTACTACAGTACATGGTA
GAGTCCCCAACGCTTCCAAGGCACTCCTGAGTGAACGATCCGCCGGTGCC
TGACAGCATGCAGGGGAAGGGGCGATTGTGCACCACGTACTTGTACTTCG
AAGTACACTGCCACTGCTTACTTCTGGTGAAGCGGCCAGGGACAGTGCAC
CATAGCTGCTACACCCACCCACACCCACAATGCCGTGATTGGTGCTCGAG
TACTCAAAGTACTTCGAAGTACTTGATGACTCTCAGGTGGCTACCGGAGT
AGGGGTGCACGGAGGCTTAATAGTAGAGGGTGACAATACAGGATACTGCT
CCCTCACGGAAAGGATCGTAGTTTGGACACATTGTACCGCCATCGTCTAA
GGGTTGAATATGGTCAGGGTGCCAGTGGCTTTGGGGTGCAAGTTGAGATC
TACTCATTCATACTTGGCGAGCATGATTCAAAGGTTTTACCACACCCGAA
CTGTCACGGTTTCTCAAAACCCTGGGGGAGGCGGGGAGGGGGGTGGGAGA
CTCTCTATCCCGATTCCCGAACGACCAGCGTTTGAGCTTCTGCGAGTCTC
TCGTCCTATTGCGGGCAGGGGTAGGAGCATGGGCAGGGAGGATAGGCGGG
CAGTCCACCAAACAGTGCTGACAAAGTAAGTACTTGCTGTCCCTTCATGT
ACTTCGAAGTAGGTCCTACACTAGCTTCTCTCTCCTTCCCCACACAAACC
TCCCCTGGCGAGCAATAAGGAAGGACCACTGTTGAGGTCTTTAGTGACGT
GGCCTGAACCCCCCCCTGTGTTGTTCCTGTTAATACTGGGCCAAGCAGCT
CTTGCATATCTGCCCGCAGGGTGACACCCGAGCGCCGCACTGTCACTGCA
CCCGCTTTCTTCACACCACCGTCGTCCAGGGCAATCCGGAGACGACGGAG
CAGGCACGGCTGCTAGGCTTCCACCGCCATGCACAAGAAGGTGTGCGGCG
CTGGCTTGACGACACACGCCTGGTCAACTTGGCCTGCTGGCTCCTCCACG
AGCTCTTCGGGCCGTACACGCACCTCCTCCAAATGTCGCTGGGTGACTCT
CACGCCGCCGCCGCTGCAGGGGGGCCTGCACAGGCCAGAGACATTGCCAC
TGCAGACTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3927477..3929186-

>mRNA_S-ischiensis_contig8.19781.1 ID=mRNA_S-ischiensis_contig8.19781.1|Name=mRNA_S-ischiensis_contig8.19781.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig8:3927477..3929186- (Schizocladia ischiensis KU_0333)
TGTTCCGCAACCCGTGAGACCCTCTTGGCGGACGGTGGGGTGGATCTCAT
CATCCTTGTCATCAACCGGTTCTTAGAAGACCCTGGGGTGTGCGAATTTG
GCTGCTGGGCCCTGGCGGCGTTTGCCGGGGACTGCGATGAGGACGGCAAG
GACGAGCCCTTCCAGTCCCACCTGGCCACCAGGGGGGGATTGCAGGCCGC
CGTGAACATTTTGACGGCCCACCCGGATTCGCAGCTGCTGCGGCACGAGG
GGCTCTTGGTGGGGTTGGCGACAGTGCAGTGTTCCGCAACCCGTGAGACC
CTCTTGGCGGACGGTGGGGTGGATCTCATCATCCTTGTCATCAACCGGTT
CTTAGAAGACCCTGGGGTGTGCGAATTTGGCTGCTGGGCCCTGGCGGCGT
TTGCCGGGGACTGCGATGAGGACGGCAAGGACGAGCCCTTCCAGTCCCAC
CTGGCCACCAGGGGGGGATTGCAGGCCGCCGTGAACATTTTGACGGCCCA
CCCGGATTCGCAGCTGCTGCGGCACGAGGGGCTCTTGGTGGGGTTGGCGA
CAGTGCAGGGCAATCCGGAGACGACGGAGCAGGCACGGCTGCTAGGCTTC
CACCGCCATGCACAAGAAGGTGTGCGGCGCTGGCTTGACGACACACGCCT
GGTCAACTTGGCCTGCTGGCTCCTCCACGAGCTCTTCGGGCCGTACACGC
ACCTCCTCCAAATGTCGCTGGGTGACTCTCACGCCGCCGCCGCTGCAGGG
GGGCCTGCACAGGCCAGAGACATTGCCACTGCAGACTACGGCAATCCGGA
GACGACGGAGCAGGCACGGCTGCTAGGCTTCCACCGCCATGCACAAGAAG
GTGTGCGGCGCTGGCTTGACGACACACGCCTGGTCAACTTGGCCTGCTGG
CTCCTCCACGAGCTCTTCGGGCCGTACACGCACCTCCTCCAAATGTCGCT
GGGTGACTCTCACGCCGCCGCCGCTGCAGGGGGGCCTGCACAGGCCAGAG
ACATTGCCACTGCAGACTAC
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