mRNA_S-ischiensis_contig8.19775.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19775.1
Unique NamemRNA_S-ischiensis_contig8.19775.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3838702..3839826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.598033-CDS-S-ischiensis_contig8:3838701..38388461622817264.598033-CDS-S-ischiensis_contig8:3838701..3838846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3838702..3838846 -
1695740979.8672433-CDS-S-ischiensis_contig8:3838701..38388461695740979.8672433-CDS-S-ischiensis_contig8:3838701..3838846Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3838702..3838846 -
1622817264.6088388-CDS-S-ischiensis_contig8:3839722..38398261622817264.6088388-CDS-S-ischiensis_contig8:3839722..3839826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3839723..3839826 -
1695740979.8783178-CDS-S-ischiensis_contig8:3839722..38398261695740979.8783178-CDS-S-ischiensis_contig8:3839722..3839826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3839723..3839826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19775.1prot_S-ischiensis_contig8.19775.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3838702..3839826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19775.1

>prot_S-ischiensis_contig8.19775.1 ID=prot_S-ischiensis_contig8.19775.1|Name=mRNA_S-ischiensis_contig8.19775.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=83bp
ERYLVPPSCHVAEPSNGSYGLDPLGATGTYQHDRGPHRYLGRYRSTKRCS
LATSVARARVQQQHRAVHLPVGRRRAPRGGWG*
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mRNA from alignment at S-ischiensis_contig8:3838702..3839826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19775.1 ID=mRNA_S-ischiensis_contig8.19775.1|Name=mRNA_S-ischiensis_contig8.19775.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1125bp|location=Sequence derived from alignment at S-ischiensis_contig8:3838702..3839826- (Schizocladia ischiensis KU_0333)
GAACGGTATCTTGTGCCGCCAAGCTGTCACGTGGCTGAGCCCAGCAACGG
CAGTTACGGATTGGACCCGCTGGGGGCGACGGGGACGTACCAGCACGACA
GAGGGTGAGGGGCAGGTTGGCAGCTGGTTTGCTGTGCGTGCAGTTTCTTG
CGGACGTCGCGCGCGCGCGTGTGTGTGTGTGTGTGTTTGCTTTTGTGTGT
GCGTGTGTGCGTGTGTGTGCGTGTGCATACATGTGTGCGTGCGTGTGTGC
GTGCGCGCGTGTGCGTCTGCGTGTGTGCGTGCGCGCGCCCCAACCGTGCG
TGTTTATGCTTGTGTGCATGTGTGCGTGCGTGCATGTGGCGCGCACCGCC
GCGGCGCACACACGCGTGTGTGCTTGTGGGCAGGCGCGTGTGCGTGCGTG
CGTGTGCGTGTGTGCGTGTGCGCACGCCCCCCGACTGTGCGTGTTTGTGC
TTGTGTGCATGTGTGTGTGTACTCCCGTCTCTGTGCATGCCCTGGACCCG
AACGATCCTCGTCTTTGCTCCTTCTTGTGGATGGCTGGCCAGCCGTAGCC
GAAGCCATTGGCCACGCGTCCTACTGGACGGAGCACGCCGGATATTTCAC
CGACGGAACTTTTGGGTTGCACCATACCGGAAACGCCATTACGGCGAAAT
TCTTCAACCTGTCACACTCCGCGGTTTGGCCATGAGCGGGAAGCGATGCA
ACCCAAATTAATCTCGGCGCGGTGTTTCAATCGGGGGGGCAATTTTTGCG
GAAAATTGGCACACATGCGGGCTCGTACTGGAGACCTCCTGATTGCGAGC
GACGTCTGCTGCCCACTTGACCAACGAGGAACAGTGCGTGCGTATTTCTC
CATTTGCTTTTGTGCTGCTGTACCGTGGAGTGCTTGCAAGTACCTGTGTG
TCACTAGAGGAAGGCGAGCTGCTGTCCCAGAACGCGCTTGACTCCTCCTC
CTCCTCTTCCTCCCCCTTCCCCTGCCCCAGCCCGCACCGTTACTTGGGGA
GGTATCGGTCCACCAAGCGCTGCAGCTTGGCCACATCGGTCGCCCGGGCT
CGAGTCCAGCAGCAGCACCGTGCGGTGCACCTGCCAGTGGGCCGCAGACG
AGCGCCACGGGGCGGGTGGGGTTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3838702..3839826-

>mRNA_S-ischiensis_contig8.19775.1 ID=mRNA_S-ischiensis_contig8.19775.1|Name=mRNA_S-ischiensis_contig8.19775.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=498bp|location=Sequence derived from alignment at S-ischiensis_contig8:3838702..3839826- (Schizocladia ischiensis KU_0333)
GAACGGTATCTTGTGCCGCCAAGCTGTCACGTGGCTGAGCCCAGCAACGG
CAGTTACGGATTGGACCCGCTGGGGGCGACGGGGACGTACCAGCACGACA
GAGGGAACGGTATCTTGTGCCGCCAAGCTGTCACGTGGCTGAGCCCAGCA
ACGGCAGTTACGGATTGGACCCGCTGGGGGCGACGGGGACGTACCAGCAC
GACAGAGGCCCGCACCGTTACTTGGGGAGGTATCGGTCCACCAAGCGCTG
CAGCTTGGCCACATCGGTCGCCCGGGCTCGAGTCCAGCAGCAGCACCGTG
CGGTGCACCTGCCAGTGGGCCGCAGACGAGCGCCACGGGGCGGGTGGGGT
TAGCCCGCACCGTTACTTGGGGAGGTATCGGTCCACCAAGCGCTGCAGCT
TGGCCACATCGGTCGCCCGGGCTCGAGTCCAGCAGCAGCACCGTGCGGTG
CACCTGCCAGTGGGCCGCAGACGAGCGCCACGGGGCGGGTGGGGTTAG
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