mRNA_S-ischiensis_contig8.19768.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19768.1
Unique NamemRNA_S-ischiensis_contig8.19768.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19768.1 vs. uniprot
Match: D8LGJ5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ5_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.630e-22
Identity = 85/109 (77.98%), Postives = 93/109 (85.32%), Query Frame = 2 
Query:    8 LRTLDLSHNRISRIAGLAACSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNPMAVRALSFNRGLKLLRLEGNPLAAHPRFRPTLTCLLPHVRTIDRRALPPNS 334
            L TL++SHNRISRI G+A C  L  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + RALSFNR LKLL LEGNPLA HPR+RPTLTCLLPHVR+ID RA+PP+S
Sbjct: 1135 LETLNMSHNRISRIGGIAQCFLLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASARALSFNRSLKLLWLEGNPLARHPRYRPTLTCLLPHVRSIDSRAMPPSS 1243
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BLAST of mRNA_S-ischiensis_contig8.19768.1 vs. uniprot
Match: A0A6H5JAS8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.630e-22
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 2 
Query:    8 LRTLDLSHNRISRIAGLAACSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNPMAVRALSFNRGLKLLRLEGNPLAAHPRFRPTLTCLLPHVRTIDRRALPPNS 334
            L TL++SHNRISRI G+  C  L  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    + RALSFNR LKLL LEGNPLA HPR+RPTLTCLLPHVR+ID RA+PP S
Sbjct: 1285 LETLNMSHNRISRIGGITQCFLLRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASARALSFNRSLKLLWLEGNPLARHPRYRPTLTCLLPHVRSIDSRAMPPTS 1393
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BLAST of mRNA_S-ischiensis_contig8.19768.1 vs. uniprot
Match: A0A836CC45_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC45_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.160e-16
Identity = 46/108 (42.59%), Postives = 57/108 (52.78%), Query Frame = 2 
Query:    5 GLRTLDLSHNRISRIAG-LAACSRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNPMAVRALSFNRGLKLLRLEGNPLAAHPRFRPTLTCLLPHVRTIDRRALP 325
            GL TLDLSHNRI+RI G +A C+RL                                   ++VR LSFNR L+ L L GNP AA  R+RP++ C LPH+ TID +ALP
Sbjct:   58 GLETLDLSHNRIARIGGGVAGCARLRVVRLAHNRLRSAGGLESLTALEHLDLGHNAIAGSLSVRILSFNRALRSLVLAGNPFAAGARYRPSVICTLPHLVTIDHKALP 165
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGJ5_ECTSI1.630e-2277.98Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JAS8_9PHAE7.630e-2277.06EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CC45_9STRA3.160e-1642.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3787785..3789176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.4204276-CDS-S-ischiensis_contig8:3787784..37878931622817264.4204276-CDS-S-ischiensis_contig8:3787784..3787893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3787785..3787893 +
1695740979.7469304-CDS-S-ischiensis_contig8:3787784..37878931695740979.7469304-CDS-S-ischiensis_contig8:3787784..3787893Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3787785..3787893 +
1622817264.4327033-CDS-S-ischiensis_contig8:3788926..37891741622817264.4327033-CDS-S-ischiensis_contig8:3788926..3789174Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3788927..3789174 +
1695740979.7560833-CDS-S-ischiensis_contig8:3788926..37891741695740979.7560833-CDS-S-ischiensis_contig8:3788926..3789174Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3788927..3789174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19768.1prot_S-ischiensis_contig8.19768.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3787785..3789174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19768.1

>prot_S-ischiensis_contig8.19768.1 ID=prot_S-ischiensis_contig8.19768.1|Name=mRNA_S-ischiensis_contig8.19768.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
GRLAHAGPEPQPHLAHRRPRRVLTAAVAPAGPQQHQERAGARAPHVPRTA
GPEPQPGAQPHGRAGPQLQPRPQAPPTGGQPAGGPPPLPPHPHVPPAPRP
HHRPPGPAPQQHDSCLTPP
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mRNA from alignment at S-ischiensis_contig8:3787785..3789176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19768.1 ID=mRNA_S-ischiensis_contig8.19768.1|Name=mRNA_S-ischiensis_contig8.19768.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1392bp|location=Sequence derived from alignment at S-ischiensis_contig8:3787785..3789176+ (Schizocladia ischiensis KU_0333)
GGCCGGCTTGCGCACGCTGGACCTGAGCCACAACCGCATCTCGCGCATCG
CCGGCCTCGCCGCGTGCTCACGGCTGCGGTCGCTCCAGCTGGGCCACAAC
AGCATCAAGGTCAGCGCTGTGTGTATGTGTTTGTGGGTTTGTGTGTTTGG
GGGGGGGTGGCACTTACAGTAGGGGTTACTTTAAAGTATTTAGGGCCTAA
CTAGCCTTCATTTTAGGTCTAGTTACCCCGAATTACCTCTAATTAAGGGC
AAGGTCAAGGTTGTTTTTCCCCCTCCTTCCCCATCTCTTCTCCTTTTCTT
TATCCTCCGCCCCCCACCTGCCTGGTCCCTTGTCCTTGATGTGACAAGCA
CTAACAATAACACTCATAGTAACATTCAATTCTCAAATGGATCACCTGAA
ATTACGAGAACAGTCAATCGCACACACGTGTGATTGTACGTCGTTACAAT
TTATATGAATCACCTCTAATTCAGGGCCTAAAGGGGCACGACTTCGGGGT
TACCGTAATCGTCGGAGAGATCTTGCCCCCCCATGCCAATCTTCGGGATA
ACTTTTCTCGCCAAGTACTGGTCTGATTCACGCGGGAAAACTCGGGAAAT
CTCCCTCAGGACCTGGGGTAACTTTTCTGATAGTTTTCGGGACAATTCGG
GACCTCTCCGGCTAGAAATATTCCCCCGAAAATTGTCCCATGGGGGCAAT
ATCTCTCCGCCGATTACTGTAAGTGCCAACCCTGTAGTAGGGGGGGAGGG
GTGGGGCATAAGCGCGAGCGCGCGCGCGCGTGTGTGTTTGTGTTTGCGTG
TGCGGTCGCTTCTTGCAGCTGGGCCACACAGCGTCAAGTCAAGGTCACCC
GTGCTATTAGGGGGAGGGAGGGGGCGAGGGGGTCCGTTCTGTGCATGTGT
GTGCGTGTGGAGCGCGCATGTCTGTTTGCATACGCTCAAGCGCGTTTGCG
CGGGCTCTACCTCGCGCGGCGTTTGTGCACACACGCACACACACACACAC
ACACACACACACACACACACCCCTACAGGAGCATCAACAACCGCTGACCC
CCTCCGCCCCACCCCCACCCCCGCCCGCCACCCCACCCCATGCCCCCTCA
CCCCCCCCTCCCCCACTCCCCCCCTCTCCCCACGCCGAACAGAGCGCGCT
GGGGCTCGCGCACCTCACGTCCCTCGAACAGCTGGACCTGAGCCACAACC
TGGTGCCCAACCCCATGGCCGTGCGGGCCCTCAGCTTCAACCGCGGCCTC
AAGCTCCTCCGACTGGAGGGCAACCCGCTGGCGGCCCACCCCCGCTTCCG
CCCCACCCTCACGTGCCTCCTGCCCCACGTCCGCACCATCGACCGCCGGG
CCCTGCCCCCCAACAGCACGATAGCTGCCTCACGCCTCCACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3787785..3789176+

>mRNA_S-ischiensis_contig8.19768.1 ID=mRNA_S-ischiensis_contig8.19768.1|Name=mRNA_S-ischiensis_contig8.19768.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig8:3787785..3789176+ (Schizocladia ischiensis KU_0333)
GGCCGGCTTGCGCACGCTGGACCTGAGCCACAACCGCATCTCGCGCATCG
CCGGCCTCGCCGCGTGCTCACGGCTGCGGTCGCTCCAGCTGGGCCACAAC
AGCATCAAGGGCCGGCTTGCGCACGCTGGACCTGAGCCACAACCGCATCT
CGCGCATCGCCGGCCTCGCCGCGTGCTCACGGCTGCGGTCGCTCCAGCTG
GGCCACAACAGCATCAAGAGCGCGCTGGGGCTCGCGCACCTCACGTCCCT
CGAACAGCTGGACCTGAGCCACAACCTGGTGCCCAACCCCATGGCCGTGC
GGGCCCTCAGCTTCAACCGCGGCCTCAAGCTCCTCCGACTGGAGGGCAAC
CCGCTGGCGGCCCACCCCCGCTTCCGCCCCACCCTCACGTGCCTCCTGCC
CCACGTCCGCACCATCGACCGCCGGGCCCTGCCCCCCAACAGCACGATAG
CTGCCTCACGCCTCCAAGCGCGCTGGGGCTCGCGCACCTCACGTCCCTCG
AACAGCTGGACCTGAGCCACAACCTGGTGCCCAACCCCATGGCCGTGCGG
GCCCTCAGCTTCAACCGCGGCCTCAAGCTCCTCCGACTGGAGGGCAACCC
GCTGGCGGCCCACCCCCGCTTCCGCCCCACCCTCACGTGCCTCCTGCCCC
ACGTCCGCACCATCGACCGCCGGGCCCTGCCCCCCAACAGCACGATAGCT
GCCTCACGCCTCCA
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