mRNA_S-ischiensis_contig8.19766.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19766.1
Unique NamemRNA_S-ischiensis_contig8.19766.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3761728..3766254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1501
Cds size1329
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19766.1prot_S-ischiensis_contig8.19766.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3761898..3766254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.3408573-UTR-S-ischiensis_contig8:3761727..37618971622817264.3408573-UTR-S-ischiensis_contig8:3761727..3761897Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3761728..3761897 +
1695740979.6837156-UTR-S-ischiensis_contig8:3761727..37618971695740979.6837156-UTR-S-ischiensis_contig8:3761727..3761897Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3761728..3761897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.3539693-CDS-S-ischiensis_contig8:3761897..37624331622817264.3539693-CDS-S-ischiensis_contig8:3761897..3762433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3761898..3762433 +
1695740979.695273-CDS-S-ischiensis_contig8:3761897..37624331695740979.695273-CDS-S-ischiensis_contig8:3761897..3762433Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3761898..3762433 +
1622817264.3649588-CDS-S-ischiensis_contig8:3763206..37634151622817264.3649588-CDS-S-ischiensis_contig8:3763206..3763415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3763207..3763415 +
1695740979.709509-CDS-S-ischiensis_contig8:3763206..37634151695740979.709509-CDS-S-ischiensis_contig8:3763206..3763415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3763207..3763415 +
1622817264.3758507-CDS-S-ischiensis_contig8:3764157..37642781622817264.3758507-CDS-S-ischiensis_contig8:3764157..3764278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3764158..3764278 +
1695740979.725767-CDS-S-ischiensis_contig8:3764157..37642781695740979.725767-CDS-S-ischiensis_contig8:3764157..3764278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3764158..3764278 +
1622817264.3867984-CDS-S-ischiensis_contig8:3765791..37662541622817264.3867984-CDS-S-ischiensis_contig8:3765791..3766254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3765792..3766254 +
1695740979.7348073-CDS-S-ischiensis_contig8:3765791..37662541695740979.7348073-CDS-S-ischiensis_contig8:3765791..3766254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3765792..3766254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19766.1

>prot_S-ischiensis_contig8.19766.1 ID=prot_S-ischiensis_contig8.19766.1|Name=mRNA_S-ischiensis_contig8.19766.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=443bp
MGWDTACCNFILLPWCVHFESLFSPLPMYEDSSVHSLYNHPQPCAGTACG
LISRSVNSTYSLESARTSSPVVRTGVCGVPPSSRAAPRPGSGIRICVVPM
FLCSSQAAAPDRTACLYTCQAFLRLAHTPVLDICALDTDLSPRSAMGTPL
PTPSLYSPFSGMDNSPGIPDKNAVCPVYSEDPPPYSEVPPPYSATSPALS
AYDAFSARGTPPPVRPAYRRPQSTTWWAPPRVPAPGRLQPARFRRGRPGG
TGHLPTGAEEAEASPKPASTLSMLPRGSPLPIAAPRPSGTQATLGQRLHW
WGPLRGWQWPPAGPFPRQRSTTWPGLWGAWPWTTRLRRLQRRPGLRPGRR
SGGRTSKEGKPASPERAAKLIPSSLISSLTGTDSYPANLRCSRLAVRAWP
RWYCIKPDCRGGTSGDCAGPLRVRGMATGRREGGGGGGAAGGW
back to top

mRNA from alignment at S-ischiensis_contig8:3761728..3766254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19766.1 ID=mRNA_S-ischiensis_contig8.19766.1|Name=mRNA_S-ischiensis_contig8.19766.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4527bp|location=Sequence derived from alignment at S-ischiensis_contig8:3761728..3766254+ (Schizocladia ischiensis KU_0333)
CCAGTGGCCGGGATGTGTCTGTCTGTCTGTGTGTGCGTATCTGAGGGAGG
CGACCAGTTGCTTGCAGTACGTTAGCCGTACAAGCATATTGGCCACACAT
CCCATAGGGGAATCCTGCGGGACGGAGCACTGTTCCTCTTGTGGTGGAAG
CTCCATTTCCGGTTGTTGTCATGGGCTGGGACACGGCGTGCTGCAATTTT
ATCTTGTTGCCCTGGTGCGTCCATTTCGAGTCTCTTTTCTCACCCTTGCC
AATGTATGAGGACTCATCCGTACACTCACTGTACAACCACCCACAACCTT
GTGCGGGCACAGCCTGCGGTCTCATTTCTCGGTCGGTGAATTCGACTTAC
TCTCTCGAGTCGGCGAGAACGTCCTCTCCCGTTGTACGGACTGGGGTGTG
CGGGGTACCCCCCAGCAGTAGGGCAGCACCACGGCCCGGCTCTGGTATTC
GTATATGTGTTGTGCCAATGTTCCTCTGCTCATCCCAAGCAGCAGCACCC
GATCGGACGGCATGCCTGTACACCTGCCAGGCCTTTCTGAGGCTGGCCCA
TACTCCCGTACTTGATATTTGTGCCCTTGATACTGACCTCAGTCCCCGCT
CCGCAATGGGCACCCCCTTGCCCACGCCCAGCCTGTATTCTCCGTTCTCC
GGCATGGACAACAGTCCGGGGATTCCGGACAAGAATGCGGTATGTCCGGT
GTACAGGTGTGTCTGGGGGAGGCGGGGAAAGGGGAAAGGGCAGGAGAGGG
GGGGGGGGGAGGGAGGGAACGGGAGTGGGGGAGGGGGAGGGGGGGCGGGG
GGGGTAGGTAGGTCGGGAGGAAGAGAGGGGGGAGGGAAGAAGGGAGAGCG
GGAGGAAAGGTAGGAAGGGGGGCAGGGAGGGAGCGGGCGGGGTGCCTTCT
TCTGTTTGCAAGTTCCTGTGTGTGTTGCTGTGTCTGTGCGAGACAAGCAT
GTGTATTGTCTTGTTTGGGGTACTACTGTACTGCATGGTACCTCGAAGTA
CGAGCGTACACAAGATGGAAAATTGGAGCGGCCGAGGGCGGCGGAAACGA
GCGTGAGCTGTGCACAGACGCAGGGAGGCACTTGTCCTGTGCGTCCCACG
CCGTGACACTTGTAGCCCCAGCGTGTATAGCACCAGCCACAACACAGCCT
GACCCGCTGCCGGCCCCGCTCGCCCAGACGTTACTGTAGTTGGCTACAAT
ACCACCACACAGTCAATCTCAAGATTGCGACGTCCACAAGCAGTTGCTTG
GAAGCGGTACTACGAAGTACATTACAGTACAGCAGCATTTTAAGGAACAA
CATGGGGCGAGGCGCGGGCCAGTACAGTAGGACTTCCTCCTGCACTACTT
ACGCCTGCACCGCGTCATGGTTGCCCTGGTCATCGCTGCCCCCTGAGAGC
TCAACCCCACCCCGTTTGCCCCACCCCGGCCAACCCCCGGCAACCCCCCC
CCCCACACACCTACCCCACCGGTCTACAGCGAAGACCCACCGCCGTACAG
CGAAGTCCCACCGCCGTACAGCGCCACGTCCCCGGCATTGAGCGCGTACG
ATGCCTTCTCCGCCAGGGGTACACCCCCTCCTGTCCGGCCTGCGTATCGA
CGGCCCCAAAGTACGACTTGGTGGGCCCCCCCCCGGGTCCCAGCGCCGGG
AAGGCTCCAGCCGGCAAGGTTCAGGCGCGGCAGGCCAGGTGAGGCTTGGA
GTGTTGACGGTACCTTGTGTTTCAAGCCTAACGGTGAGCCTTGGAGCGAG
GGCTGCGGCACAGCTGAATGTGTGTAGGGCTTTGCGACTGGGTCAGTGTG
CCGCGGGCATGGGAGGGCTGAGGTTTGCGATGGCTTCTTGAAAGGGAGAG
AGTCGTGTTTGGCGGTGCTTGCAACGGTAGGCAGCCATCTGCATTCATTC
CGTGTGAGTTGGACACTACTCTGTAAACGAGCTTAAAGAGGTACTTTCCC
CACCTTGTGTGTGTACAGTACCGCAGTACAACACAGCAGTACTGTACTAT
GGACTCGAACGGGCTGTGGTGTTGTTTTGGGCTCGTGTGGCTTGGCCATT
GTCCAGAAGCAATTGAAAGGAGTCCCTGGCTGTGGTTTGGCAGTCTACTG
CGCAATAAAGTACGTCCAAGTAGTTTAGAATTGTCTTTTTGCTACTGTAG
AGTACAGTTACAGTTTCTTCGTAGGGCAGGTGATCTGCACTTGTACTGTA
AAGTACACACAAAGCACGGTATAGTCTACAGTAGAGCACAGCATAGCACA
GTGCAGTACACATGTACCGAACAGCATGCCACTTTTTCCCTTGCCGCGCG
TACAGCAAGCACAGCGCACAGCTCGTGGTATGCGATCATTTACATGCCTT
GCCCGGCCTTACATGCCCCCCCTGCACTAACTTGCCTACACCCTGTGTGT
GCTCGTGCGGACTCTCTTCCACTCTGGCAGGCGGGACAGGGCATCTCCCT
ACGGGGGCAGAGGAGGCGGAGGCATCCCCAAAACCTGCTTCAACTCTGAG
TATGCTCCCCAGGGGCTCCCCACTGCCCATCGCGGCACCGCGCCCGTCGG
GGTGAGTCATACATGGTCTTGCGTGATGTGATGTGATGTGTACTCTAGGG
CTCTGTACTCGAGTAGTGTAATAGTTTGATTTGACACGACATCTGTTACT
GTAATGTAGTACGCTGTACTGTGCTGTGCTGTGGCAGTCTTGCTCTTGAC
GAATGCTCGGCTCTGCCCGTGGAGTCCTGTGCTGTCCTGTGCTGTACTGT
ACTGTGCTGTACTGGTGCACTGTAGTCTGCTGTATTTCACGTACTGTACT
GTACTGTACTGTACTGCACTGTACTGTACTGTACTGTGCTGTGCTCAAGT
ACTGCGGTGTACTGTACTGTACTGTGCTCGAATACTGTACTTCGTACAGC
TCTACTGTACTGTACTGGTCTTTGAAGTGTACTCGTACTGGTACTGTAAG
CGCAGAAGCATAGTACGGACACTCCTCATCATTGCGTGACAGTGCTCGGC
TTACCAGGCGGTATCGGCTATCACCTACTCTGCACTCTTTACTGCATCAT
ATATATATGCAAGTGCTGTGTTGCCACGCGACATGATGCAGGGGTGCTTG
CAGTTCAAGACTGCCCACCTTGTGGGTGCAATGTATCGCCACCTGACATG
GCGCAGTAAAGACTACAGCAGGTACTGTGGAGTACAGTGGTAAGTGTCAC
TGATGTGACAGAGGCGTGCGAGTACAGTAGCTAAAGAACTGTGCACAGTG
CAGTGCCGAACTAATACTGTACTGTAGCAAGTACTCTACCTGGAGAGCTC
TAGCCAAGAAAGAGCAAGGGGAGTACAGTGGGTGCCTCATGCCACCGCAA
AGGCAGCAGTGATGGAATATCGATCAGTAGATAGTTATCGGGCTCGACTG
ATTTTTTGGGTGCTCTTACTAGCTACTTGGATTCAGTGTGGGTCAAACTA
TCGATTATCCACTATCGATAGATATATAGACCAAAACAGACCAGGTCTGT
CGATAAATAGGTTGATTTGCTTAGATATTCCACCACTGAAAGGCAGGAGC
GATGCAGCACTGCAGAGCTCAGGCCCCGCCAACTCGAGAGGCACTGACGC
AGTTTGCTTGAGGCATGGTACTGTGCTGTACTGTCCTCGTACTATACTGT
GGGTGGTCCCGTCTTACCCAAAGCGTCTTCACATGCTGTGGGAAGATAGA
CCTGCTGTACTGTACAGCCCGAGTAGAGTATGTTGTGCTTCCAAGTGCTT
CCAAGTACAAAGTACCATTGCAGCATGCATGCACGGTACGGTACTGCGAA
GTAGAGCACATACAGTAGAGTAGTTGGCCGTTCATGTGACCTGCTTGACC
TGCGCGATGATGAGCGGCCACCCGCTTTCTTCCTTCCTGAGTCACGCCGC
AGCAAACACACACTGTAGCACTTCGTACGTACGAGTAAGTACTCGAGTAC
TGGTACACTAGTTACACTAGTACTTCCAAGTACCTGCTGCCCAGTTCCAA
GTATGCCGCCGCCGCCGCCTCTGCTGCTGTTTGTTGCCATTGTGGCCCGG
ACTCACCCACGCAGAACGCAGGCGACGCTTGGGCAGAGGCTGCATTGGTG
GGGGCCTTTGAGGGGCTGGCAGTGGCCGCCTGCAGGTCCGTTCCCAAGGC
AGCGGTCGACGACCTGGCCGGGTTTATGGGGAGCATGGCCCTGGACCACC
AGGCTCAGGCGTCTGCAGCGGCGGCCGGGACTGCGGCCGGGGAGGAGGAG
TGGTGGGAGGACCTCTAAGGAGGGAAAACCCGCTTCTCCTGAGAGGGCGG
CCAAGCTGATCCCGTCTTCCCTCATCTCCTCTCTGACGGGGACCGACTCG
TACCCCGCGAATTTGCGGTGCAGCCGGCTGGCCGTGCGGGCATGGCCGCG
GTGGTACTGCATAAAGCCTGATTGCCGTGGGGGCACGAGTGGTGACTGTG
CGGGGCCGCTCCGAGTGCGCGGGATGGCGACTGGGAGAAGGGAAGGAGGA
GGAGGAGGAGGAGCCGCAGGAGGGTGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3761728..3766254+

>mRNA_S-ischiensis_contig8.19766.1 ID=mRNA_S-ischiensis_contig8.19766.1|Name=mRNA_S-ischiensis_contig8.19766.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2658bp|location=Sequence derived from alignment at S-ischiensis_contig8:3761728..3766254+ (Schizocladia ischiensis KU_0333)
ATGGGCTGGGACACGGCGTGCTGCAATTTTATCTTGTTGCCCTGGTGCGT
CCATTTCGAGTCTCTTTTCTCACCCTTGCCAATGTATGAGGACTCATCCG
TACACTCACTGTACAACCACCCACAACCTTGTGCGGGCACAGCCTGCGGT
CTCATTTCTCGGTCGGTGAATTCGACTTACTCTCTCGAGTCGGCGAGAAC
GTCCTCTCCCGTTGTACGGACTGGGGTGTGCGGGGTACCCCCCAGCAGTA
GGGCAGCACCACGGCCCGGCTCTGGTATTCGTATATGTGTTGTGCCAATG
TTCCTCTGCTCATCCCAAGCAGCAGCACCCGATCGGACGGCATGCCTGTA
CACCTGCCAGGCCTTTCTGAGGCTGGCCCATACTCCCGTACTTGATATTT
GTGCCCTTGATACTGACCTCAGTCCCCGCTCCGCAATGGGCACCCCCTTG
CCCACGCCCAGCCTGTATTCTCCGTTCTCCGGCATGGACAACAGTCCGGG
GATTCCGGACAAGAATGCGGTATGTCCGGTGTACAGATGGGCTGGGACAC
GGCGTGCTGCAATTTTATCTTGTTGCCCTGGTGCGTCCATTTCGAGTCTC
TTTTCTCACCCTTGCCAATGTATGAGGACTCATCCGTACACTCACTGTAC
AACCACCCACAACCTTGTGCGGGCACAGCCTGCGGTCTCATTTCTCGGTC
GGTGAATTCGACTTACTCTCTCGAGTCGGCGAGAACGTCCTCTCCCGTTG
TACGGACTGGGGTGTGCGGGGTACCCCCCAGCAGTAGGGCAGCACCACGG
CCCGGCTCTGGTATTCGTATATGTGTTGTGCCAATGTTCCTCTGCTCATC
CCAAGCAGCAGCACCCGATCGGACGGCATGCCTGTACACCTGCCAGGCCT
TTCTGAGGCTGGCCCATACTCCCGTACTTGATATTTGTGCCCTTGATACT
GACCTCAGTCCCCGCTCCGCAATGGGCACCCCCTTGCCCACGCCCAGCCT
GTATTCTCCGTTCTCCGGCATGGACAACAGTCCGGGGATTCCGGACAAGA
ATGCGGTATGTCCGGTGTACAGCGAAGACCCACCGCCGTACAGCGAAGTC
CCACCGCCGTACAGCGCCACGTCCCCGGCATTGAGCGCGTACGATGCCTT
CTCCGCCAGGGGTACACCCCCTCCTGTCCGGCCTGCGTATCGACGGCCCC
AAAGTACGACTTGGTGGGCCCCCCCCCGGGTCCCAGCGCCGGGAAGGCTC
CAGCCGGCAAGGTTCAGGCGCGGCAGGCCAGCGAAGACCCACCGCCGTAC
AGCGAAGTCCCACCGCCGTACAGCGCCACGTCCCCGGCATTGAGCGCGTA
CGATGCCTTCTCCGCCAGGGGTACACCCCCTCCTGTCCGGCCTGCGTATC
GACGGCCCCAAAGTACGACTTGGTGGGCCCCCCCCCGGGTCCCAGCGCCG
GGAAGGCTCCAGCCGGCAAGGTTCAGGCGCGGCAGGCCAGGCGGGACAGG
GCATCTCCCTACGGGGGCAGAGGAGGCGGAGGCATCCCCAAAACCTGCTT
CAACTCTGAGTATGCTCCCCAGGGGCTCCCCACTGCCCATCGCGGCACCG
CGCCCGTCGGGGCGGGACAGGGCATCTCCCTACGGGGGCAGAGGAGGCGG
AGGCATCCCCAAAACCTGCTTCAACTCTGAGTATGCTCCCCAGGGGCTCC
CCACTGCCCATCGCGGCACCGCGCCCGTCGGGAACGCAGGCGACGCTTGG
GCAGAGGCTGCATTGGTGGGGGCCTTTGAGGGGCTGGCAGTGGCCGCCTG
CAGGTCCGTTCCCAAGGCAGCGGTCGACGACCTGGCCGGGTTTATGGGGA
GCATGGCCCTGGACCACCAGGCTCAGGCGTCTGCAGCGGCGGCCGGGACT
GCGGCCGGGGAGGAGGAGTGGTGGGAGGACCTCTAAGGAGGGAAAACCCG
CTTCTCCTGAGAGGGCGGCCAAGCTGATCCCGTCTTCCCTCATCTCCTCT
CTGACGGGGACCGACTCGTACCCCGCGAATTTGCGGTGCAGCCGGCTGGC
CGTGCGGGCATGGCCGCGGTGGTACTGCATAAAGCCTGATTGCCGTGGGG
GCACGAGTGGTGACTGTGCGGGGCCGCTCCGAGTGCGCGGGATGGCGACT
GGGAGAAGGGAAGGAGGAGGAGGAGGAGGAGCCGCAGGAGGGTGGAACGC
AGGCGACGCTTGGGCAGAGGCTGCATTGGTGGGGGCCTTTGAGGGGCTGG
CAGTGGCCGCCTGCAGGTCCGTTCCCAAGGCAGCGGTCGACGACCTGGCC
GGGTTTATGGGGAGCATGGCCCTGGACCACCAGGCTCAGGCGTCTGCAGC
GGCGGCCGGGACTGCGGCCGGGGAGGAGGAGTGGTGGGAGGACCTCTAAG
GAGGGAAAACCCGCTTCTCCTGAGAGGGCGGCCAAGCTGATCCCGTCTTC
CCTCATCTCCTCTCTGACGGGGACCGACTCGTACCCCGCGAATTTGCGGT
GCAGCCGGCTGGCCGTGCGGGCATGGCCGCGGTGGTACTGCATAAAGCCT
GATTGCCGTGGGGGCACGAGTGGTGACTGTGCGGGGCCGCTCCGAGTGCG
CGGGATGGCGACTGGGAGAAGGGAAGGAGGAGGAGGAGGAGGAGCCGCAG
GAGGGTGG
back to top