mRNA_S-ischiensis_contig8.19763.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19763.1
Unique NamemRNA_S-ischiensis_contig8.19763.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19763.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.270e-18
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1 
Query:    4 AYFAGLGRRALSQGSGVDIFCGGNEALGAAALHALVAPTGGYVLTHPAFGAEFREDLRKSTCEQAMSEGED------VHGCIVDVRTSRELQLRHVIGPASLSDDHDRIDAAAVHASAMAAR 351
            AYFAGLG +A + G GVD+FC G  ALGAA LHAL  PTGG V+    FGA F+ DL +   +   +          +  C++DVRT    +L  V+GPAS +D H  +D  A   +  AA+
Sbjct:  341 AYFAGLGEQASAGGIGVDLFCAGARALGAATLHALTRPTGGVVVARQTFGAAFQRDLLRVLSQPPGAXXXXXXXXAGLRACVLDVRTCARAELLRVVGPASSTDAHGGVDDDAYRIALAAAQ 462
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAM5_9STRA1.270e-1842.62Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3739448..3744317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-10_002710.1
Exons3
Model size406
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19763.1prot_S-ischiensis_contig8.19763.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3739449..3744317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.274524-CDS-S-ischiensis_contig8:3739448..37396301622817264.274524-CDS-S-ischiensis_contig8:3739448..3739630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3739449..3739630 -
1695740979.64643-CDS-S-ischiensis_contig8:3739448..37396301695740979.64643-CDS-S-ischiensis_contig8:3739448..3739630Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3739449..3739630 -
1622817264.2866368-CDS-S-ischiensis_contig8:3740918..37410991622817264.2866368-CDS-S-ischiensis_contig8:3740918..3741099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3740919..3741099 -
1695740979.658268-CDS-S-ischiensis_contig8:3740918..37410991695740979.658268-CDS-S-ischiensis_contig8:3740918..3741099Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3740919..3741099 -
1622817264.2999556-CDS-S-ischiensis_contig8:3744275..37443171622817264.2999556-CDS-S-ischiensis_contig8:3744275..3744317Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3744276..3744317 -
1695740979.6688967-CDS-S-ischiensis_contig8:3744275..37443171695740979.6688967-CDS-S-ischiensis_contig8:3744275..3744317Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3744276..3744317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19763.1

>prot_S-ischiensis_contig8.19763.1 ID=prot_S-ischiensis_contig8.19763.1|Name=mRNA_S-ischiensis_contig8.19763.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=135bp
TAYFAGLGRRALSQGSGVDIFCGGNEALGAAALHALVAPTGGYVLTHPAF
GAEFREDLRKSTCEQAMSEGEDVHGCIVDVRTSRELQLRHVIGPASLSDD
HDRIDAAAVHASAMAARATGPHMWDEQGRQEEEEE
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mRNA from alignment at S-ischiensis_contig8:3739448..3744317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19763.1 ID=mRNA_S-ischiensis_contig8.19763.1|Name=mRNA_S-ischiensis_contig8.19763.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4870bp|location=Sequence derived from alignment at S-ischiensis_contig8:3739448..3744317- (Schizocladia ischiensis KU_0333)
ACCGCGTACTTTGCCGGGCTGGGGCGGCGGGCGCTGTCGCAGGTGAGGGG
GGGGGGGAAGGGGAGGGTGAGGGGGGGGGGGGGAGGGCGGGGATGTACGT
TTACCAGCAGTAGGGGAGGGAGGGACAGGCAGTGTAGGGGAGCTGGCGGC
GGCAACCGCCGACTTTGCCAGGCTGGGGCGGTGGGCGCTGTCCCAGGTGA
GACTCGTGCTCTCAACCGCTTGGGTATCCTGAATCTCAATCTCCTAACTA
CTGGAGCATCCCGAACCTCCTTCTCTTAACTACGTACTGGGCAGCCTAAA
ACTCAAATCCCCTAACTACTTGGGTATCCCGAAACGTTTGCCTACTTTGC
CGGGCTGGGGTGTAGGGCGCTGTCCCAGGTGAGGGGAGGGGGAGGGGGAG
GGGGAGGGGGGTGTACATTTACTAGCAGTAGGGGAGGGGAGGGGAGGGGA
GGGGTGGGCCGGGGGTGGGCAGGGAATGGGCGGGGGAGGGGGGGGGGGGG
GGGATGTACAGTTGCCAAGTGCTAGCAGTAGGGGAGGGAGGGACACGCAG
TGTAGGGGTTGCCAAGTGCTAGCAGTAGGGGAGGGAGGGACACGCAGTGT
AGGGGAGGGCAGGGGGGGAAAGGGCAAGTGGAGGGGGAGGGGCGGGAGTT
GGGTGGGGAGGGGCGGGGGCGGGAAGGGGGAGGGGGAGGGGGGGGGGGGA
GGGGGGGGGGAGGAGAGGGGGCGAGCGGAGGGGAGGGGAGCGGAGGGGTG
GAGCACCCGTGGTGAGCTTGCTACGTGTACTCGAGTGAGTAGACATGAGG
CATGAGGGGACGTTTGTGAGGAGACACTTTGGCCGCGCCTGGACGGGGGG
GGCACAATGCATCGGTTATTTGTATACTTCGAAGTAAATTATAACGAGGT
ACAATCGCACGTGTGTGAGACTTGAGTGTTCCTTTGACCGATAGCCCGCG
GAGGACAATGGTACAGTACAGTGCAGGACAATACTGTGCTGTACTTGCGT
GCTTGCTGTTTGATGCCCATGGGTACGCTCGTCGCAGAGAAAACCGCCCC
CCTACCCATGGCCCCGAGGGTGGAGGGCCCGGTTTTTCCACGACGCCCGA
ACTTTGTCAGACGTTTGTAGTACACGGCATCCATCCAACCAGACGGCCAG
AAACCCGGCAGGCAACAACCCCCAAAACTTTCAGTGTGCAGAACGGGACG
GGGTCCTCAGCGTCCGCTTTCGGTGGCGAGGAAAGTCGGCCCCCTACTTA
CATACATTGCAGCCGCCTAAATCCTAAATGCCGTCTTGGGACTGATGTAG
GGGGCAGGAACACGAAAAGAAGGGGGCAAGAGAACCCTTCCCCCCACAGT
ACATCGATTCATATACAGTAGGTAGTTCATGAGGCTTTATGCGCGCAGTA
CTGTTTTTTTGCATGAAGACAAACAAGTGAGTGGGAAAGAAGAGGTGTCC
CTACATACGCGAGTTCGGGGCCCCACCCCCGGAAGCCCTTCCTTTCACTC
GCAGTAATGGGTCCGCCCCCGGCGTCGATTTTATCGGGGAACCCAATGGT
GCCAAACTCGTACTCTACACTCCTGCGGCCCTGGCTCTGCCAGGTGCGGG
GAGGGAGGGGGCCTGCTCCATCTATAGTCGGTCGAGGCGCGACAGGGGTC
ACGAATGGTCTCGGGACCAACTTGCGGCAAGCTTACAACAGCGCAAGTAC
ATTTGTATACTGTAGCAGGGTCGGCACTTGGAGGTTAATTAGGGTCTAGT
TTGCCTTCAATTTAGGTCTAACTGCCCCTAGTTACCTCTTTAAGGGCCTA
AACGGGCACCACTTGGGTGTGATCACCTACGTGTCTATACTGTAGAGTGG
TTTCGTGCGCCGTCGCCCTCGTAGCCGCTAACCCGTTTACCCCTAGGGTC
CGTACAATCATAGGGTTTTAGCGTGTAAGTCCACTGAGCCAGGGGTAAAA
AGGTTAAGTAGCGGGCAGGGCGTCCCGTGAGGCAGCCCATGTGAGGGCAG
GGGAGGGGAAAAAGGGGGACCGGGGATGGAGGGAGCGAGGGAAGGGCCAA
AACCGCTTTCCCATCGAAACTGGTAGAGAACGTCTTTGACAAGGGGGGCA
ACAACTGCTTTCCCGTCAAAAGCTGGTACAGAGAGTCTTTGGCCGTGTGC
TTGTGAGCACTACCCTACCGCTGTACTCTACTAGTAGCTGTATCTGTTTC
CGTGTTTCATTTTATGTACTATGTAGTATGTACTTGGTAAGTACGCATGT
TTTGCTTGTTGTAGTCCAGAGACTACTGTAGAGCTGTGAACTGGCTGGAC
AGATGAGGTTGTTGCAACTGGCGGCAAGCACCGGGTTTTACCCTTTTTTT
GTTTTGTTTTCCCCCGGTTGGGCTCCCGGGGCCAGTTTTTGCAGTTTTCT
GGGGGGATATTGTTCGGCCGAACTGGTTGTTCCTTTTTTTTTCTTCCACT
ATCCGGACGATGTTTTCAGATGTCAACGGCAAAGGTTGAAGTGCAGCGGC
AATATCGGACGTCCAAAAGGCATGAAATCAAAGGGGGGGGGGGGCTGGAA
TACCGACCTACCGGCCGGTCGGTTTCCGTTTCTCACCGATTAATTGGTCC
CGGCCGCTTTAACCCTTCTGCCCCAGGTGTACTTCACGGAACTATGGGGA
TTTAGTGTGTGTAAACACCCTCTGCGGGTCGAAGGGTTATAACTGGTTGT
CGATTCACAACTCTGCCAGAGACCGTTGACCACGCGCCGTAATATACTCT
ACAATATACTACTGTAATGTACTCTGCCAGAACATATGTATCCATGGTGC
TTAAAACGACACACATGGCCTCTTGTCCCCCGTACAAGACTCCTTGCAGC
CCCTTGTAGCACTCTCAGTCTAGGAGATATCTCTAGTTCCCCTCCTTACA
CCTTAGGTATTTCTGCCCTAGTCAGCACAGCCCCCCAGGCCTCACATGTA
CAGACATTGTGCTTGCTGTAGTCCCGAGACCATTGACAACGCACTGTTGA
CGGCAGAGCCATCTCCCTCCCGCCTCGTATACTACGTAGTATATATACGT
ATGCGTATTCCTGGGCGTAGTTTCGGCTTATCTGCGTTTCCCTTCGCCCT
TGCGGATGTAGCCCCTAAGCACTTTCCCCTCCGCCTGCGCAGCATTCTTA
TTTTTTCCCCCTTGTATACTACTCAAGTATATATATACATATGTGCACTA
CTGGACGAAAACGCGCAGGGATCCGGCGTGGACATCTTCTGCGGCGGCAA
CGAGGCCCTTGGAGCGGCCGCGCTGCACGCCCTGGTGGCCCCCACGGGGG
GCTACGTGCTCACGCACCCCGCCTTCGGGGCGGAATTCCGGGAGGACCTG
CGCAAGAGCACCTGCGAGCAGGCCATGAGCGAGGGGGAGGACGTGCACGG
TGCGTGTCTTGCAGTGATGGATCTCTCTGTCTCTCTCTCTTTTCTCTCTC
TCATATCCCCCCCCCCCCCTCTCTGAAATCTTTATGTGCCCAAGCAAGTG
GTACAGTAGAGTATGTACTGTACTACTACGAAGCAGTTGTTTCCAAGAGG
ACTTGGACCTGCACTACTGTAGAGCAGCTGCGAGCAGGCCATGAGCAGGG
GGCAGGACGTACACGGTGCGTTTGAACGAGGTACAATCGCACGTGTGTGA
GATTGGAGTGTATCAGTGGTTATCCCATTTAAGAATTGAGTGTTCTCGTG
TTAGCCATTATCACATCAAAGAATTAAAAACAAAGAGGACGATTCGTTTG
CGCTCCGACCTTGGAAGGGGCGCGCGGCCCAATCGACTGTCCCTCCGACT
TGGGTGAGCTCTCTGTTGGGTGTGGGTTCATTTCATTTTACGCTGGTGCT
TGCTTCGGAACGCTTGGAAGTACACAGATGTACAAGTACTCGTAGGTATA
CATATACGTGTGTACTCACATTGTGCTTGCCATACTGTAGTCCCGACACC
ATTGACCACGTGCCTCGGTTGAGACGGAGCAGGTGTTCATGATTCACACA
CTGTACATCTTCTTAACTCCTCAGCGCGCTGTGAATAGTCGTATTTACTG
TAGCACTTCGGCCATCGACCCTCGCGTCTCGACAACTACCCCGGGACGGA
GGATGTCGTGTTTGCACCGACCAGGCAAGCACAGGTACATGCCGAGCACA
ATCTCCGAACTAAGTGCTTGGGAATTGCTTTGGTGTTTCGAAATCAAGTC
TCCCAACTACTTGGGTTCTTTGACGCTCGTTCTCCTAACTACTTGCAAGT
ACTTGGTGTTTCGAAACCAAGTCGCCCAAATACTTGCATTTTTAGCCCTT
GTTCTCGTAGCTACTTAAAGTGCTTTGGTGTTTCAAAACCAAGTCTCCAA
ACTATAGTACTTGGGTTCTTTGACGCTCGTTCCCCTAGCCGCTTGGATGT
TCTGACAATGGTCTCGGGACTGCGGCCAGTCTGTTGGACGTGAGTGCAGT
ACGTATGCACTGAGGTAGGTATACTCTCTATACAGTTCCGGCTGAAACTG
AAGGCCGTCAAACAAACGCATCAAACAAACCGAAACTCGTCGTCACCCCT
GCGGCACCGGAGTTGCCCAAACAAATCTTCGTTGACATCAACATGGTCAT
TGCCACCACCACCACCACTGCCACTGCCACCACCACCACCACCACCACCA
CCACCACCACCACCACCACGTCACCCCCCCCCCCCAGGCTGCATCGTCGA
CGTGCGCACCTCCCGAGAGCTCCAGCTGCGGCACGTCATCGGCCCCGCCT
CCCTCAGCGACGACCACGACCGCATCGACGCCGCCGCCGTGCACGCCTCC
GCCATGGCCGCCCGCGCCACGGGGCCCCACATGTGGGACGAGCAGGGCAG
GCAGGAGGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3739448..3744317-

>mRNA_S-ischiensis_contig8.19763.1 ID=mRNA_S-ischiensis_contig8.19763.1|Name=mRNA_S-ischiensis_contig8.19763.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=810bp|location=Sequence derived from alignment at S-ischiensis_contig8:3739448..3744317- (Schizocladia ischiensis KU_0333)
ACCGCGTACTTTGCCGGGCTGGGGCGGCGGGCGCTGTCGCAGACCGCGTA
CTTTGCCGGGCTGGGGCGGCGGGCGCTGTCGCAGGGATCCGGCGTGGACA
TCTTCTGCGGCGGCAACGAGGCCCTTGGAGCGGCCGCGCTGCACGCCCTG
GTGGCCCCCACGGGGGGCTACGTGCTCACGCACCCCGCCTTCGGGGCGGA
ATTCCGGGAGGACCTGCGCAAGAGCACCTGCGAGCAGGCCATGAGCGAGG
GGGAGGACGTGCACGGGATCCGGCGTGGACATCTTCTGCGGCGGCAACGA
GGCCCTTGGAGCGGCCGCGCTGCACGCCCTGGTGGCCCCCACGGGGGGCT
ACGTGCTCACGCACCCCGCCTTCGGGGCGGAATTCCGGGAGGACCTGCGC
AAGAGCACCTGCGAGCAGGCCATGAGCGAGGGGGAGGACGTGCACGGCTG
CATCGTCGACGTGCGCACCTCCCGAGAGCTCCAGCTGCGGCACGTCATCG
GCCCCGCCTCCCTCAGCGACGACCACGACCGCATCGACGCCGCCGCCGTG
CACGCCTCCGCCATGGCCGCCCGCGCCACGGGGCCCCACATGTGGGACGA
GCAGGGCAGGCAGGAGGAGGAGGAGGAGGCTGCATCGTCGACGTGCGCAC
CTCCCGAGAGCTCCAGCTGCGGCACGTCATCGGCCCCGCCTCCCTCAGCG
ACGACCACGACCGCATCGACGCCGCCGCCGTGCACGCCTCCGCCATGGCC
GCCCGCGCCACGGGGCCCCACATGTGGGACGAGCAGGGCAGGCAGGAGGA
GGAGGAGGAG
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