mRNA_S-ischiensis_contig8.19760.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19760.1
Unique NamemRNA_S-ischiensis_contig8.19760.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3723692..3724529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.2286997-CDS-S-ischiensis_contig8:3723691..37237281622817264.2286997-CDS-S-ischiensis_contig8:3723691..3723728Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3723692..3723728 +
1695740979.6250544-CDS-S-ischiensis_contig8:3723691..37237281695740979.6250544-CDS-S-ischiensis_contig8:3723691..3723728Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3723692..3723728 +
1622817264.2420197-CDS-S-ischiensis_contig8:3724313..37245281622817264.2420197-CDS-S-ischiensis_contig8:3724313..3724528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3724314..3724528 +
1695740979.635476-CDS-S-ischiensis_contig8:3724313..37245281695740979.635476-CDS-S-ischiensis_contig8:3724313..3724528Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3724314..3724528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19760.1prot_S-ischiensis_contig8.19760.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3723692..3724528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19760.1

>prot_S-ischiensis_contig8.19760.1 ID=prot_S-ischiensis_contig8.19760.1|Name=mRNA_S-ischiensis_contig8.19760.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
STRVLGGRRNTRGKKTCDTFKGCPKNRPLKRRPHKIKCSRRNGCTKWRCC
KERGNCGGFECPDNQILLGLPELIPCRGSRCETA
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mRNA from alignment at S-ischiensis_contig8:3723692..3724529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19760.1 ID=mRNA_S-ischiensis_contig8.19760.1|Name=mRNA_S-ischiensis_contig8.19760.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=838bp|location=Sequence derived from alignment at S-ischiensis_contig8:3723692..3724529+ (Schizocladia ischiensis KU_0333)
AGCACAAGGGTTCTTGGCGGCCGCCGTAACACACGCGGTAAGGTGCGCGG
TCCCTCCAAAACCGACCAAAAACAAGCAAGAATACTCCTCCGAGCCTAGA
ACACCTCAACGACGTCTCACCGGCTACGAATCAGTGAGGACTCAGGAGGC
TCTACCTTGGCTGTTGTCTTGTGACCGTCGCCACGCATCTCTCCACGCGA
ACGCGCCCACAATACTGGCTGCGCCCCGCAACATCGCCCATCCACGCGCT
AGCGCTTCTGCATGTTCTGAAACTGGGCAGGGTTGACGTGCTTGACGGTG
CTGGTGCCCTTGTTTTAGCTATAGCAAAACGCCCATACGTGCTCTCCAGA
CCAGACCCACCGTAGCACAACCCTTGTGGTCATGGCCTCGCAAGAGGCAT
GGGGACCGGTTGATTTCCTGGAGCTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCTTGTTTTTCGACAAAGCTACCCCTGAGTAACAGGTTCCCACCCCAAA
CTGACAACAGCACGCCCATTGAAGCACCAGGATGATGGGCGGCTGCCCTC
AGCTGTGGTCGCAAACATGCCTGCTCTCGTGAGTGCTCACCCCAACACGG
TCCACGATTTTTGCTGGTACAGGCAAGAAAACGTGCGACACCTTCAAAGG
GTGCCCTAAAAACCGCCCCCTGAAGCGGCGTCCCCACAAGATCAAGTGCT
CGCGGCGGAATGGATGCACCAAATGGCGGTGCTGCAAGGAACGCGGCAAC
TGCGGCGGCTTTGAGTGCCCTGACAACCAAATCCTGCTGGGCTTGCCGGA
GCTGATCCCGTGCCGGGGTTCTCGGTGCGAAACCGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3723692..3724529+

>mRNA_S-ischiensis_contig8.19760.1 ID=mRNA_S-ischiensis_contig8.19760.1|Name=mRNA_S-ischiensis_contig8.19760.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig8:3723692..3724529+ (Schizocladia ischiensis KU_0333)
AGCACAAGGGTTCTTGGCGGCCGCCGTAACACACGCGAGCACAAGGGTTC
TTGGCGGCCGCCGTAACACACGCGGCAAGAAAACGTGCGACACCTTCAAA
GGGTGCCCTAAAAACCGCCCCCTGAAGCGGCGTCCCCACAAGATCAAGTG
CTCGCGGCGGAATGGATGCACCAAATGGCGGTGCTGCAAGGAACGCGGCA
ACTGCGGCGGCTTTGAGTGCCCTGACAACCAAATCCTGCTGGGCTTGCCG
GAGCTGATCCCGTGCCGGGGTTCTCGGTGCGAAACCGCGGCAAGAAAACG
TGCGACACCTTCAAAGGGTGCCCTAAAAACCGCCCCCTGAAGCGGCGTCC
CCACAAGATCAAGTGCTCGCGGCGGAATGGATGCACCAAATGGCGGTGCT
GCAAGGAACGCGGCAACTGCGGCGGCTTTGAGTGCCCTGACAACCAAATC
CTGCTGGGCTTGCCGGAGCTGATCCCGTGCCGGGGTTCTCGGTGCGAAAC
CGCG
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