mRNA_S-ischiensis_contig8.19759.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19759.1 vs. uniprot
Match: D7FUP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP0_ECTSI) HSP 1 Score: 140 bits (354), Expect = 5.150e-32 Identity = 90/209 (43.06%), Postives = 119/209 (56.94%), Query Frame = 1
Query: 1 PAPRVPGPGTYDVEGTLESEGAGTHFARRGARPEPASAGAPRLVFDGEKEHGRGGRPGPGSYHVDLDVTTPTWQVYPPSRD-VVASLPPSLPAQGAGPGAYVTSQFAASGPAFSLGGKLPEKVPEAADGPGPGEYIQVRSPVYDGVPVPAEGASRQGFGHQTSPRFEAAAGATPGPGAYLSHRFQAR-GPGISIGERARSPGWSAKLKD 621
P PRVPGPGTY+V G+L+ AGT F+ GA+P RLVF E+E GR +PGPG+Y V + W V P R P S PA AGPGAY++S+FA GPA+S+ + P + + + PGPG+Y+ V+ V G E + +GFG + SPRF A TPGPG Y S F + G I+ G R GWSA++K+
Sbjct: 19 PGPRVPGPGTYNVAGSLDGGSAGTFFSPIGAKPTCPRTDVKRLVFGIERE-GRD-KPGPGAYDVTKNRPL-RWNVSPRDRKHQTPRFPVSSPATDAGPGAYISSEFAGKGPAYSMPSRSPTTL-DTPESPGPGQYVHVQLSVGRG-----ENGAGEGFGKRDSPRFATEATPTPGPGEYQSPAFNPQLGKNITFGRNLRPAGWSARIKE 218 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19759.1 >prot_S-ischiensis_contig8.19759.1 ID=prot_S-ischiensis_contig8.19759.1|Name=mRNA_S-ischiensis_contig8.19759.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=410bp PAPRVPGPGTYDVEGTLESEGAGTHFARRGARPEPASAGAPRLVFDGEKEback to top mRNA from alignment at S-ischiensis_contig8:3716572..3723246- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19759.1 ID=mRNA_S-ischiensis_contig8.19759.1|Name=mRNA_S-ischiensis_contig8.19759.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6675bp|location=Sequence derived from alignment at S-ischiensis_contig8:3716572..3723246- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:3716572..3723246- >mRNA_S-ischiensis_contig8.19759.1 ID=mRNA_S-ischiensis_contig8.19759.1|Name=mRNA_S-ischiensis_contig8.19759.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2460bp|location=Sequence derived from alignment at S-ischiensis_contig8:3716572..3723246- (Schizocladia ischiensis KU_0333)back to top |