mRNA_S-ischiensis_contig8.19742.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19742.1
Unique NamemRNA_S-ischiensis_contig8.19742.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Match: D7FRB7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.300e-28
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 2 
Query:   59 KAVELINEAKLESKDQKLYLLAQVKELCLNRDLTILKHVLPLVIEFQSDFNPTVRRNVLSFLREAVRARAREVGPVAVPVAAYLLGDENATARKAAVLLANTLYRPQL 382
            + V+LIN+AK+E+K+QK++LLAQVKE+C NRD ++L  V+P+V EFQ+DFN   R+ V SFLRE VR+    VG V VPVA++L+ D N + +K A+LLANT YRP L
Sbjct:    7 RVVDLINKAKVEAKEQKIHLLAQVKEICFNRDRSLLPEVIPMVAEFQTDFNANCRKFVASFLREVVRSHPEHVGLV-VPVASFLMHDSNTSVKKVAILLANTTYRPAL 113
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BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Match: A0A4D9CTF7_9STRA (SYMPK_PTA1_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTF7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.310e-8
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   50 LLDKAVELINEAKLESKDQKLYLLAQVKELCLNRDLTILKHVLPLVI-EFQSDFNPTVRRNVLSFLREAVRARAREVGPVAVPVAAY-LLGDENATARKAAVLLANTLYRPQL 382
            L D+A+ LI++A+   +  K  LL QV+EL L RD T+L  V+PL+I EFQ+D  P++R+ ++ FL + V+A      P  V V +Y LL + + T  K  V+ A  ++R  L
Sbjct:   37 LRDQALGLISDAQTAERKDKEVLLKQVQELVLYRDPTLLDEVVPLLISEFQADPLPSIRKFLVEFLEDVVKANPSFCQPGMVDVYSYALLSEASPTVLKRVVIAATNVHRSVL 149
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BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Match: UPI00106AED00 (symplekin-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AED00)

HSP 1 Score: 59.7 bits (143), Expect = 9.320e-8
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 2 
Query:   29 GSMSSQELLDKAVELINEAKLESKDQKLYLLAQVKELCLNRDLTILKHVLPLVIEFQSDFNPTVRRNVLSFLREAVRARAREVGPVAVPVAAYLLGDENATARKAAVLLANTLYRPQL 382
            GS   +   ++ ++L+N+A+L  KD KL+ L QV+EL +N +  +L + L  ++ FQ D    VR+ VL F+ EA +    E+    +     LL D N    K  +L    LYR  L
Sbjct:   25 GSSKGKSTTERVIDLLNQAQLAKKDNKLHYLKQVQELIVNMEPALLDNFLDEILVFQHDQTTEVRKFVLGFIEEACKKDV-EILTKVIHTIVLLLNDSNVMVVKKVMLCLTQLYRLML 141
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BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Match: A0A6A0AHU2_HAELA (DUF3453 domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0AHU2_HAELA)

HSP 1 Score: 57.4 bits (137), Expect = 1.270e-7
Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 2 
Query:   62 AVELINEAKLESK-DQKLYLLAQVKELCLNRDLTILKHVLPLVIEFQSDFNPTVRRNVLSFLREAVRAR--AREVGPVAVPVAAYLLGDENATARKAAVLLANTLYRPQLALVAA 397
            A++++N+A L S+  +K+  +AQ+KEL + +D T+L   LP ++  Q D +P+VR+ +++FL EA  A   AR +   A  V+A +  D +   +KAA++  N + R  LA++AA
Sbjct:    9 AIQILNDANLSSEAPKKVAHIAQLKELLVRKDPTLLPEFLPEMVTMQVDPSPSVRKALVAFLIEAAMATSSARALQQAAASVSA-MFADSSVQVQKAALVACNLVLRAALAVLAA 122
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BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Match: A0A6S7HEJ3_PARCT (Symplekin n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEJ3_PARCT)

HSP 1 Score: 57.8 bits (138), Expect = 4.380e-7
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 2 
Query:   14 DAAPPGSMSSQ--ELLDKAVELINEAKLESKDQKLYLLAQVKELCLNRDLTILKHVLPLVIEFQSDFNPTVRRNVLSFLREAVRARAREVGPVAVPVAAYLLGDENATARKAAVLLANTLYRPQL 382
            D   PG    Q     ++ ++L+N+A+L  KD KL+ L QV+EL +N++  +L + L  ++ FQ D    VR+ VL F+ EA +    E+    +     LL D N    K  +L    LYR  L
Sbjct:   17 DENKPGEAHKQGRSTTERVIDLLNQAQLAKKDNKLHYLKQVQELIVNKEPALLDNFLDEILVFQHDQTTEVRKFVLGFIEEACKKDV-EILTKVIHTIVLLLTDANVMVVKKVMLCLTQLYRLML 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FRB7_ECTSI4.300e-2856.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CTF7_9STRA1.310e-838.94SYMPK_PTA1_N domain-containing protein n=1 Tax=Nan... [more]
UPI00106AED009.320e-833.05symplekin-like n=1 Tax=Dendronephthya gigantea Tax... [more]
A0A6A0AHU2_HAELA1.270e-735.65DUF3453 domain-containing protein (Fragment) n=1 T... [more]
A0A6S7HEJ3_PARCT4.380e-732.80Symplekin n=2 Tax=Paramuricea clavata TaxID=317549... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3558082..3561375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19742.1prot_S-ischiensis_contig8.19742.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3558082..3561375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817264.0981596-CDS-S-ischiensis_contig8:3558081..35582811622817264.0981596-CDS-S-ischiensis_contig8:3558081..3558281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3558082..3558281 -
1695740979.5476012-CDS-S-ischiensis_contig8:3558081..35582811695740979.5476012-CDS-S-ischiensis_contig8:3558081..3558281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3558082..3558281 -
1622817264.112788-CDS-S-ischiensis_contig8:3559247..35593191622817264.112788-CDS-S-ischiensis_contig8:3559247..3559319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3559248..3559319 -
1695740979.5573783-CDS-S-ischiensis_contig8:3559247..35593191695740979.5573783-CDS-S-ischiensis_contig8:3559247..3559319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3559248..3559319 -
1622817264.1251612-CDS-S-ischiensis_contig8:3561248..35613751622817264.1251612-CDS-S-ischiensis_contig8:3561248..3561375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3561249..3561375 -
1695740979.567615-CDS-S-ischiensis_contig8:3561248..35613751695740979.567615-CDS-S-ischiensis_contig8:3561248..3561375Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3561249..3561375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19742.1

>prot_S-ischiensis_contig8.19742.1 ID=prot_S-ischiensis_contig8.19742.1|Name=mRNA_S-ischiensis_contig8.19742.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
GAGARRGPPREHVFAGAPGQGCGADKRGQTGVEGPETLPACTGEGAVPEP
GPDHPQACPPPGHRVSVGLQPHGPPQRPLLPARGGAGEGPGGWAGGRPRG
RLPTGRRERHGPQGGCAAGEHAVPPAVGLGGGR
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mRNA from alignment at S-ischiensis_contig8:3558082..3561375-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19742.1 ID=mRNA_S-ischiensis_contig8.19742.1|Name=mRNA_S-ischiensis_contig8.19742.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3294bp|location=Sequence derived from alignment at S-ischiensis_contig8:3558082..3561375- (Schizocladia ischiensis KU_0333)
GGTGCAGGTGCGCGACGCGGCCCCCCCCGGGAGCATGTCTTCGCAGGAGC
TCCTGGACAAGGCTGTGGAGCTGATAAACGAGGCCAAACTGGAGTCGAAG
GACCAGAAACTCTACCTGCTTGCACAGGTGGGAGCCAAGCGCCGCGCACT
TGGGCGCAATACTCTGTGCGCGGGGTGTCCGAGGAGCGCTGCTGTTGCAA
GCCTTTGTGACGAGTTTAAGATTAAAGACGTGAACGGTTCTTAAATCTGC
GTTGGTAGGGCTGCTAGGGCAGGTGGAAGCTTTTGTGGCCTTAATGGTGG
CAAAGCCCGCACTTCTGCCCACCAATGCGGCCCGAGGAGCAGGCATGCGG
GCAGCTCCGGCCAAGACAGCCGGCACCCTGAGGACAAGAGGCCTTTCCTC
AGGCTGGCATGAGCGTTGCGCATGTCCCCTGTACGTTTTGGCGTTGTTGT
TCGCGAGTTTGGCCACAAAATGGATTATTAAATTTGGCGTGTCCGCCAAC
CAAACCTCAAACCAACTCGCAGAGCGTGCTGTTTTGGGAGGGTTCGCCTC
CCCAGACCGGCTGTCTTTCGTACGGACCGCCACCCGTTTACAGCGGAACA
GGAGACACCCCTTGGCAGCTCCCTCGGTTAGAGCAGCCAGTCCCTGGCCG
ATCGTGTGTCGTAGTGGTGCACACATGGCAATCGCGCCACGTCCAGGTTT
GAATTTGGCAGTTGGCGACACACCCCGTGCATGGGATGAAAGATGCATTG
GCGAGCGAGCACTACAGTACCCGCACACAACGTTCGTGCTTACTGGATCG
GCCGGTGTGTGGAGCCCCCCCCCCCGGGGCCATTGGTGAAACAACCGCGG
CGCACTGCCATGCGCCCCGCCATGCGCCGCGCCACCCCCCCCCGGGGGGC
CGGTACGCCTCATGGCATTTTATCGCGCCGCAAGTCTTCGAAGTGCTCGT
GCAGTGTGTCCGTCCGTCCTTGGTCAGCGCGCTGTACTCGCTGCGCAGTA
CTACTGCACCATACTGCGGTACTGTAGTGCACGTCACAGACGAGGCGTGC
TCGTACTGCGCTGTCGCGCCCGGCCAGACGGGGAAAACTCGGCCCGCTCC
TAACCCCGGCATGTCTAGCAAGACACCTGAGGATGCGCGCGAGGCCGAAT
GGCCGGAAAGCTACTTTTACCCTGCGGGAGCTGACAGGCTGTCCCGCAAG
CACCGGTTGCCGACGGCCTGACTACTGGAGGCGTGTGCACAGGGCCGTCA
ATTGTTCTGCGACTGTCTGTGCGTGCTACTGTACGGTACTGTACCTACTT
TCACTGTTTCTTCCAAGCACTCGCCGCAAGGGAGAGTAGGTACTGTAGCA
TACCCCCCCCCCCACTGCCGCCACCGGCCCGTCTCCCATCCCTCACGTGC
CTCGACTCGATTGTCCTCTCTCTCGCTCTCCTCCCGTGCAGAAACTACCG
TGTAGGTAGGTGCTACCACAGACTGCGCAGCTGCATGCAGATGACCCCCC
TGTGAGACGTCCCGGCGGTCCGTGGTTGCACTTCTTCTCAACCCTGTGAG
GACGACGGGACACTGATGTGATGCGATGCGATTTTATGTCAAACTACAGT
GCAATAGAGGACACATCACATCACATCGCATTAATGGTGAGATTCGATGT
CAAACTGCAGTGCATTCGAGGACGCATGACATCACATTGCATTGGTGGTG
CGATTTGATGTCAAACTACAGTGCATTAGAGGACACATCACATCACTGAC
GCGATGCGATTTAATGTCAAACTACAGTGCGTTAGAGGACACATCACATC
ACATCGCATCACATCAGCGTCTGCCCCCGCCGTCCTCCAAGGGATAAGGC
AAGAAACTCGTGAGAAGCCCCCCCAACGCTCCCCGCCCTCGCCCCCCCGG
GCGCCTCACGTTTCTAAGATGGCCCCTCCCCCCTTCCCCCTCCCTCCCAT
GACTTATGTGTCTGTGCCTGCCGCACGTGCCCTCTACATATCCGATAGCA
TGCGTTAGATAACAATCTGGTAGGCCTGATTCATGAGCCCATCGTACGTC
CTGCAGGTGAAGGAGCTGTGCCTGAACCGGGACCTGACCATCCTCAAGCA
TGTCCTCCCCCTGGTCATAGAGTTTCAGGTGTGTGCATATGTGTGTGTGT
GCGTGTGATGTGTCTCCGTATGTGTGTGTGTGTGTGTGTCCGTATTTGTG
TGTGTGTGTGTGTATGCGCGGATAGCAATCGACGAGGCGGGTGTCTCACG
TGCAGTTGTCCGGCGTCGCCATCAACGCCAGACAATGAAGGGCTGAAACA
CTGTAAGTTAGTTGCTTCGAAGTGCTCTGAAGTACGAAGTACATATGCTC
CCAAGTACGAGCTCATCACCCCCCCCCCCCCCGCCACAGGTCAGCCCCCC
GCTGGTTTCCAGCCTGAAACGGGTCCTCCTGCGAAAACCTGCTGGATATG
ACGTGATGCGATTCGCACTCGAACCTGATGTATTTATTAGATGCGCACTC
GTAAGTTACACAAATCTCGGCCGACGCACGGGGTCGATGGTCTCTCGGGA
CTACGGCAAGCTCTGTTACAGTAGGTGGGCTTGTCCACACGAGTACAGTA
AGTTGTACAGCTCTACTTTCGGTACTACTGTACTCGAGTACAGTAGTATT
CGTACTCATATTTTGGTATCATATCACTGCACATCACATATCATCGCTTC
GCTTCGCGCCAATCATCAACGTCACAACACCGCCATCCGCCCCCTCCGAG
AACCAACTGACCGCGCCGCACCCCATTCCCCCCCGGGGCTACCACACGCG
CATCCTGTTGCCGCCGCCGCCGCCCCGCGCTGCCATCACTGCCACCGTCA
CCGCCGCCCGCTGCCACCGCCGCCGCCATTGCTACCCGCCTCCACCGCCG
CTGCCATCGCTGCCCTCCGCCGCCACTGCCGCCATTGCTACCTGCCGCCA
CCGCCGCCATCGCGGCTGCCATCGCTGCCCGCCGCCACCGCCGCTGCCAT
TGCCACCCGCCGCCACCGCCACTGCTGTCGCTGCCCGCCTCCACCGCCGC
CGCCCGCCGCCGCCACCCGCCACCGCCGCCGCCGCCGAGTGTAGTCGGAC
TTCAACCCCACGGTCCGCCGCAACGTCCTCTCCTTCCTGCGCGAGGCGGT
GCGGGCGAGGGCCCGGGAGGTTGGGCCGGTGGCCGTCCCCGTGGCCGCCT
ACCTACTGGGCGACGAGAACGCCACGGCCCGCAAGGCGGCTGTGCTGCTG
GCGAACACGCTGTACCGCCCGCAGTTGGCCTTGGTGGCGGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3558082..3561375-

>mRNA_S-ischiensis_contig8.19742.1 ID=mRNA_S-ischiensis_contig8.19742.1|Name=mRNA_S-ischiensis_contig8.19742.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig8:3558082..3561375- (Schizocladia ischiensis KU_0333)
GGTGCAGGTGCGCGACGCGGCCCCCCCCGGGAGCATGTCTTCGCAGGAGC
TCCTGGACAAGGCTGTGGAGCTGATAAACGAGGCCAAACTGGAGTCGAAG
GACCAGAAACTCTACCTGCTTGCACAGGGTGCAGGTGCGCGACGCGGCCC
CCCCCGGGAGCATGTCTTCGCAGGAGCTCCTGGACAAGGCTGTGGAGCTG
ATAAACGAGGCCAAACTGGAGTCGAAGGACCAGAAACTCTACCTGCTTGC
ACAGGTGAAGGAGCTGTGCCTGAACCGGGACCTGACCATCCTCAAGCATG
TCCTCCCCCTGGTCATAGAGTTTCAGGTGAAGGAGCTGTGCCTGAACCGG
GACCTGACCATCCTCAAGCATGTCCTCCCCCTGGTCATAGAGTTTCAGTC
GGACTTCAACCCCACGGTCCGCCGCAACGTCCTCTCCTTCCTGCGCGAGG
CGGTGCGGGCGAGGGCCCGGGAGGTTGGGCCGGTGGCCGTCCCCGTGGCC
GCCTACCTACTGGGCGACGAGAACGCCACGGCCCGCAAGGCGGCTGTGCT
GCTGGCGAACACGCTGTACCGCCCGCAGTTGGCCTTGGTGGCGGCCGGTC
GGACTTCAACCCCACGGTCCGCCGCAACGTCCTCTCCTTCCTGCGCGAGG
CGGTGCGGGCGAGGGCCCGGGAGGTTGGGCCGGTGGCCGTCCCCGTGGCC
GCCTACCTACTGGGCGACGAGAACGCCACGGCCCGCAAGGCGGCTGTGCT
GCTGGCGAACACGCTGTACCGCCCGCAGTTGGCCTTGGTGGCGGCCGG
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