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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 3 |
| Model size | 631 |
| Cds size | 510 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817264.0048838-UTR-S-ischiensis_contig8:3528844..3528900 | 1622817264.0048838-UTR-S-ischiensis_contig8:3528844..3528900 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3528845..3528900 + |
| 1695740979.4905717-UTR-S-ischiensis_contig8:3528844..3528900 | 1695740979.4905717-UTR-S-ischiensis_contig8:3528844..3528900 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3528845..3528900 + |
| 1622817264.064732-UTR-S-ischiensis_contig8:3531217..3531282 | 1622817264.064732-UTR-S-ischiensis_contig8:3531217..3531282 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3531218..3531282 + |
| 1695740979.5372207-UTR-S-ischiensis_contig8:3531217..3531282 | 1695740979.5372207-UTR-S-ischiensis_contig8:3531217..3531282 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig8 3531218..3531282 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817264.019263-CDS-S-ischiensis_contig8:3528900..3529066 | 1622817264.019263-CDS-S-ischiensis_contig8:3528900..3529066 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3528901..3529066 + |
| 1695740979.5011811-CDS-S-ischiensis_contig8:3528900..3529066 | 1695740979.5011811-CDS-S-ischiensis_contig8:3528900..3529066 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3528901..3529066 + |
| 1622817264.0351846-CDS-S-ischiensis_contig8:3529659..3529826 | 1622817264.0351846-CDS-S-ischiensis_contig8:3529659..3529826 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3529660..3529826 + |
| 1695740979.5119948-CDS-S-ischiensis_contig8:3529659..3529826 | 1695740979.5119948-CDS-S-ischiensis_contig8:3529659..3529826 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3529660..3529826 + |
| 1622817264.0481071-CDS-S-ischiensis_contig8:3531040..3531217 | 1622817264.0481071-CDS-S-ischiensis_contig8:3531040..3531217 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3531041..3531217 + |
| 1695740979.5253758-CDS-S-ischiensis_contig8:3531040..3531217 | 1695740979.5253758-CDS-S-ischiensis_contig8:3531040..3531217 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 3531041..3531217 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19739.1 >prot_S-ischiensis_contig8.19739.1 ID=prot_S-ischiensis_contig8.19739.1|Name=mRNA_S-ischiensis_contig8.19739.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=170bp
MNVGIEVDKEILLGISIGVLVVSGFTFSVLASLLWNTCPTTSTPTFFGGI
LLSLTGFYVYQLNKTRHHVLPRQHTVPAGASAAHDHTTSPLRLKWEQRHF
YGQLAALSLLLVLFLLVYSDRPGVADHDPAFKFRCYPLNTLFCVDAAITF
LVGGLFFAKSFHICPWRGW* back to topmRNA from alignment at S-ischiensis_contig8:3528845..3531282+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19739.1 ID=mRNA_S-ischiensis_contig8.19739.1|Name=mRNA_S-ischiensis_contig8.19739.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2438bp|location=Sequence derived from alignment at S-ischiensis_contig8:3528845..3531282+ (Schizocladia ischiensis KU_0333)
GGGAGGTTGAGCCCCTCGGATCTTGGCTAGGGCCGCGCCCCGCAGGGGGG
GACAGCATGAACGTCGGGATCGAAGTGGACAAGGAGATCCTCTTGGGCAT
CAGCATAGGGGTGCTCGTGGTTAGCGGATTCACGTTCAGCGTGCTGGCGT
CCCTGCTATGGAATACTTGCCCCACCACGTCCACGCCCACTTTCTTCGGG
GGAATCCTCTTGAGCCTTACGGGTGAGCTTCGAGGACGTCCGTTGGGTGG
CAATCGTGTGGGCCAGTTTTGTTAAGACCTTGGCCATGACGGCAATTACA
ACTACAGTGCATGTTTCCTGGAGGCTTACCACTACTTGGGCGGGGGGGGG
TGACCGAGCTTGGCCAGAAGCCGGGACGGGGCGGGGCGGGGCGGGGCGGG
GCGGAGGGGCAGATACGGCGACCCTTTCCCCCCCATCATCACACCCTGCA
GAATCCAGCAATGTACCTGGCCTCTAATAAGTACGCTTGCGGTGGACTTC
GGCATGCACTGTTAGCACGCTATGTGGTCATTTCCATTTTTCTGAAAGTG
CGTCACACCTCCATAGCTGGCCCTCGGGCCGCACCGTCTGGGCACACGGC
TGGGTGTGCAAACAAACAAACAAACAACATCCACTCCAATGTTTCCTCCC
GCCCGCCGCCACTTCCGCCTCGGCCTACCCTGCCTCCCTTCCGCCCAAAC
TGCCGCCTCCTGCCTGCGGGCGCGCGGCTGCGGCGGCGGCGGGGGGCACA
AAGCACGAACACGACACACAAACGCACACACGCGTACACGCACACTCGCA
CGCACACACACACAGGATTTTATGTTTACCAGTTGAACAAGACTCGGCAC
CACGTGCTACCGCGCCAGCACACAGTCCCGGCGGGCGCATCGGCAGCCCA
CGACCACACCACCAGCCCGCTGCGGCTCAAGTGGGAGCAGCGGCACTTCT
ACGGCCAGCTGGCCGCGCTTTCCCTCCTTCTTGTGAGTGCTTCGAAGTAT
GTATGGGCTTTCGACCGCTCGAGTACAGTGTACTGTAGGTGCCACCTGAC
ATGGGATGCGGGGATGCTTAACCCTTTCCCCCCTGGTAAATTGGACTTAC
ACACTAATCCCTATGATTATACGGACCCCAGCGGTAAAAGGGTTAGGGAG
AGAATACTCTAGCACTGACTTCTACTCCACCACTGCGCACGTCTGCTGTA
CAACAACGCTACCAGTACTATGTAGTAGTGCGTACTGCTGTTTGTGGTTG
CCATGCTTTTATTGTAGAGTACAACTGCAGGTAGTATGGCGACAGGGATA
GTTGGAGTGACTGCTAAGTGTTGTGCAGTACTTAAGCTCCAAATTATTAG
TCAGAAGATGTAGTTATTGATCTTGCTCGCTTGTGCCAATTTTCGGGAGG
ATATTTCTCGCCGATTGTTAAGAATTGATTCCTACATGTACTCGAGTATC
TATAGAGTACGAGTATATACATATGAATGAATCGACCCACGCGGTTGGGC
GTGTTGAAAAAAAACACTGGTCGGATTCGTGGCACGGGAAAGCTCGGGAA
AACGGTCCCCTCGCGACTGACCTGGGGACTAACTATTGTTACTACAAGTA
CTGGATTGTCCCTGGCTTGCGGGAGGGAGATTGCTCCGCCTTCAATGGTG
TGTGGTTAATGGTCTCGGGACCACGGCAAGCACAACATGAGTAGTGCATG
TAGAGTATACAATCGATCGAGGTGCTTGGTCAATGGTCTCGGGACTACGG
CAAGCACAATGTGAGTACATATGTACTACACTGTACATTGCTACTGCTGT
GCTGACAGCCCTGATGTGGATGGCGGCGAAGACAACGACGCCAGCCATGA
GAAATGATGATGATGACTACAAACAAAAAAAAAACACGATGACGGCGGTG
ACAAAACACACATACATGACGACGACACCACCACCAACAGCGACAACAAA
AACCCCAGCCGCCACCAACAGCAACGGCAAAAACCACAACTCCACCAACA
GCAACAACAACAACCACAGCCACCTCACCAACAGCAACAACAAAAACCAC
GACCACCTCCCCAACAGCAACAACAACCACAACCACCAACAACAAAAACC
ACAACCACCAACAGCAACAACAAAAACCACCACACCCACCTCACCAACCG
CAGCAACAACAAAAACCACAAACAACCACCACCTTTACCTCGGCAGGTGC
TCTTCCTCCTGGTATACAGCGACCGCCCCGGCGTCGCCGACCACGACCCT
GCCTTCAAGTTCCGCTGCTACCCCCTCAACACCCTCTTCTGCGTCGACGC
CGCCATCACCTTCCTCGTCGGCGGCCTCTTCTTCGCAAAGAGCTTCCACA
TATGCCCCTGGCGGGGGTGGTGACAACAAATGCCTTCCTTGTTCAAAAGT
GCCGCCGCCACCTTCACTACGTTTATCACGATGGTAAA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:3528845..3531282+ >mRNA_S-ischiensis_contig8.19739.1 ID=mRNA_S-ischiensis_contig8.19739.1|Name=mRNA_S-ischiensis_contig8.19739.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1020bp|location=Sequence derived from alignment at S-ischiensis_contig8:3528845..3531282+ (Schizocladia ischiensis KU_0333)
ATGAACGTCGGGATCGAAGTGGACAAGGAGATCCTCTTGGGCATCAGCAT
AGGGGTGCTCGTGGTTAGCGGATTCACGTTCAGCGTGCTGGCGTCCCTGC
TATGGAATACTTGCCCCACCACGTCCACGCCCACTTTCTTCGGGGGAATC
CTCTTGAGCCTTACGGATGAACGTCGGGATCGAAGTGGACAAGGAGATCC
TCTTGGGCATCAGCATAGGGGTGCTCGTGGTTAGCGGATTCACGTTCAGC
GTGCTGGCGTCCCTGCTATGGAATACTTGCCCCACCACGTCCACGCCCAC
TTTCTTCGGGGGAATCCTCTTGAGCCTTACGGGATTTTATGTTTACCAGT
TGAACAAGACTCGGCACCACGTGCTACCGCGCCAGCACACAGTCCCGGCG
GGCGCATCGGCAGCCCACGACCACACCACCAGCCCGCTGCGGCTCAAGTG
GGAGCAGCGGCACTTCTACGGCCAGCTGGCCGCGCTTTCCCTCCTTCTTG
ATTTTATGTTTACCAGTTGAACAAGACTCGGCACCACGTGCTACCGCGCC
AGCACACAGTCCCGGCGGGCGCATCGGCAGCCCACGACCACACCACCAGC
CCGCTGCGGCTCAAGTGGGAGCAGCGGCACTTCTACGGCCAGCTGGCCGC
GCTTTCCCTCCTTCTTGTGCTCTTCCTCCTGGTATACAGCGACCGCCCCG
GCGTCGCCGACCACGACCCTGCCTTCAAGTTCCGCTGCTACCCCCTCAAC
ACCCTCTTCTGCGTCGACGCCGCCATCACCTTCCTCGTCGGCGGCCTCTT
CTTCGCAAAGAGCTTCCACATATGCCCCTGGCGGGGGTGGTGAGTGCTCT
TCCTCCTGGTATACAGCGACCGCCCCGGCGTCGCCGACCACGACCCTGCC
TTCAAGTTCCGCTGCTACCCCCTCAACACCCTCTTCTGCGTCGACGCCGC
CATCACCTTCCTCGTCGGCGGCCTCTTCTTCGCAAAGAGCTTCCACATAT
GCCCCTGGCGGGGGTGGTGA back to top
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