mRNA_S-ischiensis_contig8.19736.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19736.1
Unique NamemRNA_S-ischiensis_contig8.19736.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A6H5JST1_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JST1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.650e-19
Identity = 50/97 (51.55%), Postives = 69/97 (71.13%), Query Frame = 2 
Query:   11 EAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYKLARAMQNRPPRPGGVGGALSGSR 301
            +   VI+  G  SFAL+F EVKL+A+TSSLT+GV G +KEI+QIVLA+LVF++QVTW N +GL  A+ G+  YK++RA   +P    G GG +  +R
Sbjct:  270 QVAVVILGTGLFSFALIFAEVKLLAITSSLTMGVFGTVKEIVQIVLAVLVFNEQVTWFNLVGLGWAIVGSMLYKISRA---KPSARNGEGGGVKDAR 363
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A7S2SUZ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.760e-16
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:   44 VSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYKLARAMQNRPPRPGGVGGALS 292
            V+F L+ VE+KLV LTSS+TLGV G IKE++QIVLAIL F DQV+WLN  GL +A+ GT AY   R +++R       GGALS
Sbjct:    1 VAFFLILVEIKLVELTSSVTLGVFGTIKELLQIVLAILAFQDQVSWLNLSGLLVAVIGTEAY---RRLKSRS-----TGGALS 75
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A7S2ANC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANC6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.480e-15
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:   38 GFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYKLAR 241
            GF +F L+  EVKL+ +TSSLTLGVLG  KE++QIV+A+LVF D VTW N IGLALA+ GT  Y   R
Sbjct:  259 GFAAFLLVLAEVKLIQITSSLTLGVLGTSKELIQIVMAVLVFKDVVTWYNVIGLALAVGGTVIYNYVR 326
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A835ZEZ4_9STRA (Triose-phosphate transporter family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEZ4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.780e-15
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 2 
Query:    8 LEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYK 232
            L+   ++ A G V+FAL+  E+ LV +TSSLTLGVLG +KEI+QI +A++ F D +T LNA GLALAL+GTW YK
Sbjct:  195 LQTAGIVAAGGCVAFALVATEIHLVKITSSLTLGVLGQLKEIVQIGIAMVAFGDAMTALNAAGLALALSGTWLYK 269
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A485LCZ8_9STRA (Aste57867_19370 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCZ8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.210e-14
Identity = 36/75 (48.00%), Postives = 58/75 (77.33%), Query Frame = 2 
Query:    5 WLEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAY 229
            WLE +  ++  G +SFAL++VE++LV  TS+L+LG+ GN+K++MQI++A+L+FHDQ++ +N +GL LA  G   Y
Sbjct:  295 WLELVVFLVCGGVLSFALIYVEIELVKKTSALSLGIAGNLKDVMQILMAMLIFHDQLSAVNGLGLCLATLGLMCY 369
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A7S3XYU7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYU7_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 1.420e-13
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:   38 GFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYK 232
            G VSF L+F EVKLV LTS+LT+GV G +KEI+ I L++ VF D +T LNA GLA A+AGT  YK
Sbjct:    1 GAVSFLLVFAEVKLVELTSALTMGVFGQVKEILTIALSMAVFGDHLTALNAAGLAAAMAGTAWYK 65
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A6G0WE52_9STRA (TPT domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WE52_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-13
Identity = 38/80 (47.50%), Postives = 60/80 (75.00%), Query Frame = 2 
Query:    5 WLEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYKLARA 244
            W E +  ++A G +SF L++VEV+LV  TS+L+LG+ GN+K++MQI++A+LVFHDQ++ +NA GL +A  G  +Y   +A
Sbjct:  294 WGECILFLIAGGILSFLLIYVEVELVKKTSALSLGIAGNLKDVMQILMAMLVFHDQLSAINAAGLCIATLGLMSYSYLKA 373
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A7S2FM58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FM58_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.540e-13
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:    8 LEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAYKLARAM--QNRP 259
            LEA+ +    G ++F L+  EVKLV LTSSLTLGV G  KE++QI+LAI+VF D +T  N IGL LA+ GT AY   + M  Q++P
Sbjct:  278 LEALVLTFIGGIMAFVLIVAEVKLVQLTSSLTLGVFGTCKELIQIMLAIIVFKDTLTVTNTIGLILAVGGTSAYHRIKDMTDQDKP 363
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: W4FAL0_9STRA (TPT domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FAL0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.620e-12
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 2 
Query:    5 WLEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAY 229
            W+E +  +   GF+SF L++VEV+LV  TS+L+LG+ GN+K++MQI++A+LVF D ++ +N  GLALA  G   Y
Sbjct:  217 WMECLVFLTTGGFLSFLLIYVEVELVKSTSALSLGIAGNLKDVMQILMAMLVFQDHLSAVNGAGLALATVGLMWY 291
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BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Match: A0A397C868_9STRA (TPT domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C868_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.870e-12
Identity = 36/75 (48.00%), Postives = 55/75 (73.33%), Query Frame = 2 
Query:    5 WLEAMTVIMAVGFVSFALLFVEVKLVALTSSLTLGVLGNIKEIMQIVLAILVFHDQVTWLNAIGLALALAGTWAY 229
            W+E +  +   GF+SF L++VEV+LV  TS+L+LG+ GN+K++MQI++A+LVF D ++ +N  GLALA  G   Y
Sbjct:  237 WMECLVFLTTGGFLSFLLIYVEVELVKSTSALSLGIAGNLKDVMQILMAMLVFQDHLSAVNGAGLALATVGLMWY 311
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST1_9PHAE1.650e-1951.55TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2SUZ7_9STRA1.760e-1657.83Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2ANC6_9STRA2.480e-1561.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZEZ4_9STRA7.780e-1557.33Triose-phosphate transporter family-domain-contain... [more]
A0A485LCZ8_9STRA7.210e-1448.00Aste57867_19370 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3XYU7_HETAK1.420e-1361.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0WE52_9STRA1.970e-1347.50TPT domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2FM58_9STRA9.540e-1352.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4FAL0_9STRA2.620e-1248.00TPT domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A397C868_9STRA2.870e-1248.00TPT domain-containing protein n=2 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3488204..3490476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19736.1prot_S-ischiensis_contig8.19736.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3488204..3490476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817263.820639-CDS-S-ischiensis_contig8:3488203..34883611622817263.820639-CDS-S-ischiensis_contig8:3488203..3488361Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3488204..3488361 -
1695740979.409351-CDS-S-ischiensis_contig8:3488203..34883611695740979.409351-CDS-S-ischiensis_contig8:3488203..3488361Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3488204..3488361 -
1622817263.8342917-CDS-S-ischiensis_contig8:3489106..34891391622817263.8342917-CDS-S-ischiensis_contig8:3489106..3489139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3489107..3489139 -
1695740979.419301-CDS-S-ischiensis_contig8:3489106..34891391695740979.419301-CDS-S-ischiensis_contig8:3489106..3489139Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3489107..3489139 -
1622817263.8494718-CDS-S-ischiensis_contig8:3490337..34904761622817263.8494718-CDS-S-ischiensis_contig8:3490337..3490476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3490338..3490476 -
1695740979.4279935-CDS-S-ischiensis_contig8:3490337..34904761695740979.4279935-CDS-S-ischiensis_contig8:3490337..3490476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3490338..3490476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19736.1

>prot_S-ischiensis_contig8.19736.1 ID=prot_S-ischiensis_contig8.19736.1|Name=mRNA_S-ischiensis_contig8.19736.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
VVAGGDDGDHGRGVCVLRAAVCGGEAGGAHEQPDAGGAGEHQGDHADRPG
HPGFPRPGNLAKCDRPGIGLGRHLGIQAGTGNAKQTTSTRGGWRRTLWVA
GKRGGRDQWQ
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mRNA from alignment at S-ischiensis_contig8:3488204..3490476-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19736.1 ID=mRNA_S-ischiensis_contig8.19736.1|Name=mRNA_S-ischiensis_contig8.19736.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2273bp|location=Sequence derived from alignment at S-ischiensis_contig8:3488204..3490476- (Schizocladia ischiensis KU_0333)
GTGGTGGCTGGAGGCGATGACGGTGATCATGGCCGTGGGGTTTGTGTCCT
TCGCGCTGCTGTTTGTGGAGGTGAAGCTGGTGGCGCTCACGAGCAGCCTG
ACGCTGGGGGTGCTGGGGAACATCAAGGAGATCATGCAGGCGAGAATGCT
ATATACTGTGTACACTGTCTATGTACTCATGCTGTACTCGAGTACATGTA
CAGTATACATACTTTGAAGTATATATCTGGGGGTGCTGGGGAACATCAAG
GATACCATAAAGGTGAGAAATGCTGTACTAGAGTATATATACGTCTACGA
GTATATATATGCTCTACTCATGCTGTACATATATATATATATATATATCT
GGGGGTGCTGGGGAACATCAAGGAGATCATGCAGGCGAGAAACGCTGTAC
ATATATATATATGTACTGACGTTGTGCTTGCCGTAGTCCCGAGACCATTG
ACCACGCCCCTCGATCGAGACGGAGCATATACTAAATATATATGTCGCCT
GTCCGGTGAAAACCCGGGATGCTCCGGCCCAGCGTAGTAGGGCCGCGTGG
CCAATGGCCGCAAGGCTACCCCTGATGGGGACCGACTGGGTCAGCATGGA
GTATACTGGCTCTAGTCGGTGGCAAGCACGGTGGGATCCCCATCCGCCAT
GAGTACACTCACGTTGTGCTTGCCATAGTCCCGAGACCGTTGACCGCGCG
CCTCGATCGAGACAGAGATACTACAGTATATATGTATGTACTCATGTGGT
GCTTGCCGTAGTCCCGAGACCATTGACCCCGCGCCTCGTGCGAAATGGAG
CAGATACTGCTATATATATTATAAATAGAGAGGGAGAGTGAGAAAGCGCG
GCCCGAAGTGCTTTTTGTGGTTGTGTTTTGTTTGAAGCTTCGAAGGCCGC
TCTGTTCCCATCTTTATTGTAGGCGGCGATAAAAGAGGACAAGCGCCGCG
AAACCTGTTGTTGTGGGTTTCGGTGTTCTCGTGTTTGGTGTGCTTCTCGT
CACTGTACTCGAGTATGTTGTGGGCCTTGATGGGCAGACCCTGCAGAGCA
TCACGCGGGGGGGTGCGCGGGAGCCTTGCGGAGGTCATGCACGCGTGAGA
GGGAGAGGAAAAGAGGGGGGGGGAGAGAGAGAGAAGAGAGAGAGAGAGGC
AGGGACAGAGACACACAGACAGGCAGGCAGAGAGAGAGCTTACGCCTCCC
CCCCTCTGTCGCCGCACGCCCTTGCTGGCACCCTCCGCACCTGCCGCCGC
CGCGACCGCCGCTGCCGCTGCCGCCGCCGCGGCCCCGACGGGGGCCTCAT
GATGTGCTCCTACCCGTCAACGAACCCCGCCTGGCAGATCGTCCTGGCCA
TCCTGGTTTTCCACGACCAGGTGAGGCGTGTGCTGGAGCGAGGACCGCCC
CTTTTTAGTCTGCCGAATCGCTCTGCATGTCTCTTGTTTCCTTCTCTCTC
AGTGGTGCTTGAATGGGTCACAAGCCCGTAAACTTACTTCGTACTGTCAA
GGGCTGTAGCGTGTGCATGGTCTCCCTCTCAATATCTGCATCCCTCTCCC
GCCCACCCACCCCGTCTTTGCATCCTCCTCGCCCCCCCCACCCCCGCTCC
ACTAGCTCCCTGTGTCTGTGTGTGTACAACTGCACCTCATGGCTGAGCCG
GTCCCCCCAAGGAGAGTGGACAGCGCACCATCCACGCACCCCGGGATGTG
TGGCGATTGGTCAAATCGCTGGGGCAAGCCACTCATCACCCTCCACTTAA
CACCCCTCCCCCCTCCCCTCCCGTCCCCTCCCTCCCTGCCGGCCTGCTGC
CTCTCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCTCCACCCTCCTTCCGT
GCTTGTCCCTTCCCTCCCTCCCTTGGCCCCTCCCGCTCTCCCCCCCCCCC
CCTCCCCCTCCCTCCCTCCGCCCCTCCCTCCCGCCGCGCCCCGCTTCCCT
CTTTCCCCTCCCTCCCTCCCTGCCTCCCTGCTCCATCCATCCATCCTACT
TCGTAATAGACAAAACTAAACTACAAAAATCGGATGTATTCAATCAATCG
TATACACCCACAACGCTTGTATTGAATTCTCAAAATCATCCATCCACTCC
CCCCCTACCCTTCAGGTAACCTGGCTAAATGCGATCGGCCTGGCATTGGC
CTTGGCCGGCACCTGGGCATACAAGCTGGCACGGGCAATGCAAAACAGAC
CACCTCGACCAGGGGGGGTTGGAGGCGCACTCTCTGGGTCGCGGGCAAGA
GGGGAGGGCGGGATCAATGGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3488204..3490476-

>mRNA_S-ischiensis_contig8.19736.1 ID=mRNA_S-ischiensis_contig8.19736.1|Name=mRNA_S-ischiensis_contig8.19736.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig8:3488204..3490476- (Schizocladia ischiensis KU_0333)
GTGGTGGCTGGAGGCGATGACGGTGATCATGGCCGTGGGGTTTGTGTCCT
TCGCGCTGCTGTTTGTGGAGGTGAAGCTGGTGGCGCTCACGAGCAGCCTG
ACGCTGGGGGTGCTGGGGAACATCAAGGAGATCATGCAGGTGGTGGCTGG
AGGCGATGACGGTGATCATGGCCGTGGGGTTTGTGTCCTTCGCGCTGCTG
TTTGTGGAGGTGAAGCTGGTGGCGCTCACGAGCAGCCTGACGCTGGGGGT
GCTGGGGAACATCAAGGAGATCATGCAGATCGTCCTGGCCATCCTGGTTT
TCCACGACCAGATCGTCCTGGCCATCCTGGTTTTCCACGACCAGGTAACC
TGGCTAAATGCGATCGGCCTGGCATTGGCCTTGGCCGGCACCTGGGCATA
CAAGCTGGCACGGGCAATGCAAAACAGACCACCTCGACCAGGGGGGGTTG
GAGGCGCACTCTCTGGGTCGCGGGCAAGAGGGGAGGGCGGGATCAATGGC
AGGTAACCTGGCTAAATGCGATCGGCCTGGCATTGGCCTTGGCCGGCACC
TGGGCATACAAGCTGGCACGGGCAATGCAAAACAGACCACCTCGACCAGG
GGGGGTTGGAGGCGCACTCTCTGGGTCGCGGGCAAGAGGGGAGGGCGGGA
TCAATGGCAG
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