mRNA_S-ischiensis_contig8.19717.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19717.1
Unique NamemRNA_S-ischiensis_contig8.19717.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 7.490e-97
Identity = 151/242 (62.40%), Postives = 181/242 (74.79%), Query Frame = 1
Query:    7 DPPDPSSHPRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEEEGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEM 732
            DP    + P C+DPT     AY+  +A  LCR P  NARS L+VV+S+MHGV D WA  AF  F L P+++V  Q EP PEFPTV FPNPEE+GAL+ A+ LA+  G   VLANDPDGDRLAAAERQP G W+ FSG++IG LLG W W +WR  +P  D S AVM+AS VSS+ML A+A+ EGF +E+TLPGFKWMG+R  +LKA+G  +LFAYEEAIGFGPGD VFEKDGLS+AALFAEM
Sbjct:  291 DPESAIAGPLCSDPTEHIVEAYFRGIAKGLCRRPEANARSGLEVVYSAMHGVGDSWAQRAFNCFSLPPYVSVGCQSEPDPEFPTVAFPNPEEQGALKEAMLLAEERGIPFVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRKHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLKAEGKTILFAYEEAIGFGPGDVVFEKDGLSSAALFAEM 532          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: S4RNY9_PETMA (Phosphoglucomutase 2 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RNY9_PETMA)

HSP 1 Score: 258 bits (660), Expect = 3.570e-80
Identity = 134/239 (56.07%), Postives = 171/239 (71.55%), Query Frame = 1
Query:   31 PRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPS---ADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMA 735
            P C DP  + +R Y++D+   LC H   N RSPLK VH+S+HGV   +   +FAAFGL P IAV EQ++P PEFPTV++PNPEE +G L LA+ LA+ EGA ++LANDPD DRLA AERQ  G W  F+G+++G LLG WL+  W+E +P    A   R  M++S VSS++L A+A +EGF +E+TL GFKWMGNRA EL  QG  VLFA+EEAIGF  G  V +KDG+SAAA+ AEMA
Sbjct:  100 PLCKDPFADINRDYFSDLR-KLCFHREQNERSPLKFVHTSVHGVGHDFVQSSFAAFGLAPPIAVAEQKDPDPEFPTVKYPNPEEGKGVLNLAIKLAEREGARVILANDPDADRLAVAERQDAGDWKVFTGNEVGALLGWWLFYCWKERSPPGTRAPLDRISMLSSTVSSKILRAIAHKEGFHFEETLTGFKWMGNRAKELMDQGKTVLFAFEEAIGFMCGTTVLDKDGVSAAAVAAEMA 337          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A2P6NL98_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NL98_9EUKA)

HSP 1 Score: 259 bits (663), Expect = 4.510e-79
Identity = 124/231 (53.68%), Postives = 161/231 (69.70%), Query Frame = 1
Query:   43 DPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEM 732
            DPT E    YY+ +A + C H   N +S  +VV++ MHGV   WA  AF +FGL PFI   EQ  P PEFPTV FPNPEE +GAL LA++ AD  G  +V+ANDPD DRLA AE+Q  G W  F+G++IG+LLGHW+W Q+R  +P  DP+  V++ + VSS+ML +MAK+EG  YE+TL GFKW+GN+A EL+  G   L+A+EEAIGF  GD   +KDG+ AAA+F EM
Sbjct:  213 DPTSEVENEYYSRIAASHCYHRADNEKSKTRVVYTPMHGVGAHWAERAFTSFGLPPFIPTEEQIHPDPEFPTVAFPNPEEGKGALTLAMNTADRNGCTIVIANDPDADRLAVAEKQKSGEWKIFTGNEIGILLGHWVWSQYRLKHPEVDPANCVVLNTTVSSKMLASMAKKEGLYYEETLTGFKWLGNKAQELEKTGKKFLYAFEEAIGFMIGDTCLDKDGIRAAAVFVEM 443          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A7S4DP23_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DP23_9EUKA)

HSP 1 Score: 254 bits (650), Expect = 1.950e-77
Identity = 128/242 (52.89%), Postives = 166/242 (68.60%), Query Frame = 1
Query:   25 SHPRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEEEGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSW-HTFSGDQIGVLLGHWLWCQWREANPS-ADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            ++P C DPT + +  Y+  +  ALCR+P +N +S LK+ +++MHGV +R+   AF  F L PF+AV +Q  P P FPTV FPNPEE+GAL LAL  A   G  LVLANDPD DRLAAAE   +    H+F+G++IG+LL  W W  ++ ANPS  D S   M+ S VSS+ML A A+ EGF+Y DTL GFKWMGN A++L  +G  VLF +EEAIG+  GD V +KDG+SA A+FAEMA  L
Sbjct:  243 ANPMCKDPTQQITSLYFESITKALCRYPSLNGKSDLKIAYTAMHGVGERFIRRAFKDFNLPPFVAVKQQGSPDPTFPTVAFPNPEEKGALDLALKTAKENGCSLVLANDPDADRLAAAELDANNDTIHSFTGNEIGILLADWQWRHFKRANPSMTDYSNIYMLNSTVSSKMLRAYAQAEGFQYMDTLTGFKWMGNTAYQLAKEGKSVLFMFEEAIGYAVGDVVLDKDGVSAGAVFAEMAASL 484          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: K3X319_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X319_GLOUD)

HSP 1 Score: 250 bits (638), Expect = 4.640e-76
Identity = 125/239 (52.30%), Postives = 173/239 (72.38%), Query Frame = 1
Query:   25 SHPRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDG-SWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMA 735
            S+P   DPT E +RAY+A +   LCR+P  NA + LK+ +++MHGV   + + +FAAF  + +I  P Q  P PEFPTV FPNPEE +GAL+LA++ A+A GA L+LANDPD DRLA AE+ P+  +W  F+G++IGVLLGHW   Q+ +A+P AD S+   +AS VSS+ML A+A+ EG  + +TL GFKWMGN+ ++L+ +G  VLF++EEAIGF  GD V +KDG+ AAA+F E+A
Sbjct:  195 SNPLVEDPTEEMTRAYFATMKERLCRYPEDNANTDLKIAYTAMHGVGHAFTSRSFAAFNHKHYIETPAQLYPDPEFPTVAFPNPEEGKGALKLAMEAAEANGARLILANDPDADRLAVAEQDPETKTWKIFTGNEIGVLLGHWELMQYLKAHPDADKSQLYFVASTVSSKMLRAVAQAEGLNFVETLTGFKWMGNKTYDLRNEGKVVLFSFEEAIGFCVGDLVKDKDGVVAAAVFGELA 433          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A821L5Y9_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821L5Y9_9NEOB)

HSP 1 Score: 242 bits (618), Expect = 2.330e-75
Identity = 124/240 (51.67%), Postives = 165/240 (68.75%), Query Frame = 1
Query:   31 PRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAV-MMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            P   DP    ++ Y++D+    C H  +N  S LK VH+S+HGV  ++   AF AF   P +AV EQ++P PEFPTV++PNPEE +G L+L+ +LAD EGA ++LANDPD DRLA AE+Q  G W  FSG+++G LLG W++  W+E NP     + V M+AS VSS++L A+A QEGF +E+TL GFKWMGNRA +L  QG  VLFA+EEAIG+     V +KDG+SAA + AEMA  L
Sbjct:   45 PLLKDPYCSINKDYFSDIQ-THCYHRDINQTSKLKFVHTSVHGVGHQFVQSAFQAFSFSPPLAVAEQKDPDPEFPTVKYPNPEEGKGVLKLSFELADKEGASIILANDPDADRLAVAEKQESGDWRVFSGNELGALLGWWIFTCWKEQNPDPGAVKNVYMLASTVSSKILRAIAVQEGFHFEETLTGFKWMGNRAKDLIDQGKTVLFAFEEAIGYMCCPLVLDKDGVSAAVIAAEMASYL 283          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A852CKU6_9PICI (PGM2L synthase (Fragment) n=1 Tax=Ramphastos sulfuratus TaxID=322582 RepID=A0A852CKU6_9PICI)

HSP 1 Score: 247 bits (630), Expect = 6.370e-75
Identity = 127/236 (53.81%), Postives = 164/236 (69.49%), Query Frame = 1
Query:   43 DPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWRE-ANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            DP     R+Y   ++  LC H  +N R  L+ VHSS HGV   +  EAF AFG  P I VPEQ++P P F T+  PNPEE E  L L+L LA+ EGA++V+A DPD DRLA AE+Q DGSW  FSG+++  L G WL+  WR+ A P A P+   M+A+ VSS++L A+A+QEGF +E+TLPGFKW+GNRAHEL   G++VLFA+EE+IGF  G  V +KDG+SAAA+ AEMA  L
Sbjct:  230 DPLGAICRSYMQGLS-RLCWHRELNQRCQLRFVHSSFHGVGHHYVQEAFRAFGFVPPIPVPEQQDPDPNFSTLSCPNPEEGESVLELSLRLAEKEGAKVVVATDPDADRLAVAEQQEDGSWKVFSGNELAALFGWWLYSCWRQRAPPGASPANLCMLATTVSSKILRAIAQQEGFHFEETLPGFKWVGNRAHELLGMGMEVLFAFEESIGFMCGTLVLDKDGVSAAAVLAEMASFL 464          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A3S2P2U3_ORYJA (Uncharacterized protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2P2U3_ORYJA)

HSP 1 Score: 239 bits (611), Expect = 2.380e-73
Identity = 131/238 (55.04%), Postives = 159/238 (66.81%), Query Frame = 1
Query:   37 CTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEEEGA-LRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQW-REANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            C DP    +R Y  D   +LC H   N  SPL+VVHSS HGV   +  EAF  FGL P I VPEQR+P P FPTV  PNPEE  + L L+L LA+ E A LVLA DPD DRLA AER    SW  FSG+++  LLG W++  W R A+ +A PS   M+A+ VSS +L+ +A+ EGF YE+TLPGFKW+GNR HEL   G  VLF++EE+IGF  GD V EKDG+SAAA+ AEMA  L
Sbjct:  227 CGDPLARINRCYM-DRLSSLCFHRAANGGSPLRVVHSSFHGVGHAFVQEAFQVFGLAPPIPVPEQRDPDPSFPTVRCPNPEEGASVLELSLRLAEKENAGLVLATDPDADRLAVAERCDGCSWKVFSGNELAALLGWWMFFNWKRNADGAAAPS-VCMLATAVSSTILQTLARAEGFHYEETLPGFKWIGNRIHELSGAGRRVLFSFEESIGFLCGDMVPEKDGVSAAAVVAEMAAYL 462          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A8C4BGV4_9TELE (Phosphoglucomutase 2 n=10 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BGV4_9TELE)

HSP 1 Score: 243 bits (620), Expect = 3.050e-73
Identity = 126/239 (52.72%), Postives = 164/239 (68.62%), Query Frame = 1
Query:   31 PRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            P   DP  +A +AY+A +    C H  VN +S +K+VH+S+HGV   +   AF AF L P  AV EQ++P PEFPTV++PNPEE EG L L+  LAD EGA ++LANDPD DRLA AE+Q  G W  FSG+++G LLG W++  W++ N   DP    M+AS VSS++L A+A +EGF +E+TL GFKWMGNRA +L  QG  VLFA+EEAIG+    AV +KDG+SAAA+  EM   L
Sbjct:  206 PLLKDPYQDAHKAYFAAIQKH-CLHRDVNKKSEVKIVHTSVHGVGHSFVQAAFEAFDLHPPFAVQEQKDPDPEFPTVKYPNPEEGEGVLTLSFALADKEGAAIILANDPDADRLAVAEKQKGGQWTVFSGNELGALLGWWMFQCWKQ-NGEGDPKDVYMLASTVSSKILRAIALKEGFHFEETLTGFKWMGNRAKDLLEQGKKVLFAFEEAIGYMCSPAVLDKDGVSAAAIVGEMTSYL 442          
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Match: A0A2T7PM16_POMCA (Uncharacterized protein n=4 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PM16_POMCA)

HSP 1 Score: 243 bits (619), Expect = 3.770e-73
Identity = 125/237 (52.74%), Postives = 166/237 (70.04%), Query Frame = 1
Query:   37 CTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSSMHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEE-EGALRLALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWLWCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMGNRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL 744
            C DP  EA +AY A ++ +LC H   NA S L++V+++MHGV   +A +AF AF L   I V EQ +P PEFPTV++PNPEE +GAL LA+  ADA  +  ++ANDPD DR+A AE+ P+G W  F+G++IG LLG+WLW  ++     A  S   M+AS VSS++L +MAK+EGFR+E+TL GFKWMGNR+ EL  QG  VLFA+EEAIG+  G  V +KDG+SAA + AE A  L
Sbjct:  206 CKDPYQEALKAYNAGLS-SLCFHKDQNANSKLRIVYTAMHGVGFPYALQAFKAFNLAEPIPVTEQVDPDPEFPTVKYPNPEEGKGALTLAMQTADAANSPFIIANDPDADRMAIAEKLPNGGWKIFTGNEIGALLGYWLWISYQNQAKKAPASDVYMLASTVSSKILHSMAKKEGFRFEETLTGFKWMGNRSDELIKQGKTVLFAFEEAIGYMCGTMVLDKDGVSAAVVMAEFASHL 441          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K128_9PHAE7.490e-9762.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
S4RNY9_PETMA3.570e-8056.07Phosphoglucomutase 2 n=2 Tax=Petromyzon marinus Ta... [more]
A0A2P6NL98_9EUKA4.510e-7953.68Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A7S4DP23_9EUKA1.950e-7752.89Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
K3X319_GLOUD4.640e-7652.30Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A821L5Y9_9NEOB2.330e-7551.67(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A852CKU6_9PICI6.370e-7553.81PGM2L synthase (Fragment) n=1 Tax=Ramphastos sulfu... [more]
A0A3S2P2U3_ORYJA2.380e-7355.04Uncharacterized protein n=1 Tax=Oryzias javanicus ... [more]
A0A8C4BGV4_9TELE3.050e-7352.72Phosphoglucomutase 2 n=10 Tax=Denticeps clupeoides... [more]
A0A2T7PM16_POMCA3.770e-7352.74Uncharacterized protein n=4 Tax=Pomacea canalicula... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3335261..3339379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.8e-64
Seed eggNOG ortholog227086.JGI_V11_89414
Preferred nameGPM2
KEGG rclassRC00408
KEGG koko:K01835,ko:K15779
KEGG ReactionR00959,R01057,R02749,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
GOsGO:0003674,GO:0003824,GO:0004614,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006139,GO:0006148,GO:0006152,GO:0006166,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008617,GO:0008973,GO:0009056,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009164,GO:0009987,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019439,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042451,GO:0042454,GO:0042455,GO:0043094,GO:0043101,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046102,GO:0046115,GO:0046128,GO:0046129,GO:0046130,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0072523,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659
EggNOG free text desc.alginic acid metabolic process
EggNOG OGsCOG1109@1,KOG1220@2759
EC5.4.2.2,5.4.2.7
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size747
Cds size744
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19717.1prot_S-ischiensis_contig8.19717.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3335261..3339377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.9067566-CDS-S-ischiensis_contig8:3335260..33353951622817298.9067566-CDS-S-ischiensis_contig8:3335260..3335395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335261..3335395 +
1695741006.7836542-CDS-S-ischiensis_contig8:3335260..33353951695741006.7836542-CDS-S-ischiensis_contig8:3335260..3335395Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335261..3335395 +
1622817298.9179041-CDS-S-ischiensis_contig8:3335912..33361021622817298.9179041-CDS-S-ischiensis_contig8:3335912..3336102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335913..3336102 +
1695741006.7985384-CDS-S-ischiensis_contig8:3335912..33361021695741006.7985384-CDS-S-ischiensis_contig8:3335912..3336102Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3335913..3336102 +
1622817298.9292724-CDS-S-ischiensis_contig8:3336932..33370361622817298.9292724-CDS-S-ischiensis_contig8:3336932..3337036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3336933..3337036 +
1695741006.8093586-CDS-S-ischiensis_contig8:3336932..33370361695741006.8093586-CDS-S-ischiensis_contig8:3336932..3337036Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3336933..3337036 +
1622817298.9414191-CDS-S-ischiensis_contig8:3337893..33380851622817298.9414191-CDS-S-ischiensis_contig8:3337893..3338085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3337894..3338085 +
1695741006.8215892-CDS-S-ischiensis_contig8:3337893..33380851695741006.8215892-CDS-S-ischiensis_contig8:3337893..3338085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3337894..3338085 +
1622817298.9520068-CDS-S-ischiensis_contig8:3338720..33387951622817298.9520068-CDS-S-ischiensis_contig8:3338720..3338795Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3338721..3338795 +
1695741006.833168-CDS-S-ischiensis_contig8:3338720..33387951695741006.833168-CDS-S-ischiensis_contig8:3338720..3338795Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3338721..3338795 +
1622817298.9665847-CDS-S-ischiensis_contig8:3339329..33393771622817298.9665847-CDS-S-ischiensis_contig8:3339329..3339377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3339330..3339377 +
1695741006.851925-CDS-S-ischiensis_contig8:3339329..33393771695741006.851925-CDS-S-ischiensis_contig8:3339329..3339377Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3339330..3339377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19717.1

>prot_S-ischiensis_contig8.19717.1 ID=prot_S-ischiensis_contig8.19717.1|Name=mRNA_S-ischiensis_contig8.19717.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=248bp
GGDPPDPSSHPRCTDPTVEASRAYYADVAGALCRHPRVNARSPLKVVHSS
MHGVSDRWAAEAFAAFGLRPFIAVPEQREPHPEFPTVEFPNPEEEGALRL
ALDLADAEGAELVLANDPDGDRLAAAERQPDGSWHTFSGDQIGVLLGHWL
WCQWREANPSADPSRAVMMASVVSSRMLEAMAKQEGFRYEDTLPGFKWMG
NRAHELKAQGLDVLFAYEEAIGFGPGDAVFEKDGLSAAALFAEMAGLL
back to top

mRNA from alignment at S-ischiensis_contig8:3335261..3339379+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19717.1 ID=mRNA_S-ischiensis_contig8.19717.1|Name=mRNA_S-ischiensis_contig8.19717.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4119bp|location=Sequence derived from alignment at S-ischiensis_contig8:3335261..3339379+ (Schizocladia ischiensis KU_0333)
GGAGGAGACCCTCCCGATCCGTCCTCCCACCCCCGGTGCACGGACCCCAC GGTAGAGGCGTCCCGCGCATACTACGCAGACGTGGCGGGGGCGCTATGTC GGCACCCGCGGGTAAACGCGCGCTCGCCGTTAAAGGTGAGCAGTAGCATA GGACTGTACTGCAGTGCCTGTTGTACGTTGTACTACAGTCCATAGGAGGA AAGGATGGAAGACGAGGGGGAGGAGGAGAAGGAAAACAAGTACTGTACGA GCAGTAGAAAAGAAGAAAACAAAGAAGGAGGAAAGGAGGAGAACAAGGAA AACAAGCCAAGCTCGGTCAGTTGCCGCCGCCCCTCGGCGTGAAAGCGCCG TTCGTCTCCAGGCGCACGCGGGTAGGTATTGCAAGCCAATCAAACCCGCC CATGCATGCCCGCCAATACACACACACGCACGCGTGCGCACACACACACA CTGCCCCGCCCCCCCAAAGGTCTGTGATGGAATATCTAAGCAAACCAACC AATATATCGACAGTGCTGATCTATAGATCTATCAATAGTCGATGTTCGAT AGTTTGACCCACACTACATCCAACTAGTTAGTAATGCCACCCACAAAATC AGTCGAGCCGGATAACTATCTACTGGTCGATATCCCCCCATCACTGCCAA AGGTGGTGCACTCTTCAATGCATGGTGTGTCGGACCGGTGGGCGGCGGAG GCGTTCGCGGCGTTTGGGCTGAGGCCCTTCATCGCCGTGCCGGAGCAGCG GGAGCCGCACCCTGAGTTCCCCACCGTGGAGTTCCCCAACCCGGAGGAGG AGGGGGCGTTAAGGCTGGCCCTGGACCTCGCCGACGCAGAAGGCGAGCAC TAAGTATATGTCTATATATGTATGTATATGTATTCATTGGTTTGTCTTGC GACATAACCTTGCGTGCAATGCCGACAGACATATGTCGTACAAGCAGCTT CGGGTTTGCCCTCATTAGGTACTCTGTAGTTGCTGCATGAGTACGAGTAC TGTAGTAGACCTGTAGACGCTTCCGAAGTTTCGACCTCGCCGACGCAGAA GGCAAGCATTTAGAGTGCTCTGTAATTGCTGTAGCAAACCCGGTGCTGGG CTACGTTTCCCAAACCCAAGTAGTTGGGAGATAGTATCCAAACGCCCAAG TAGTTAGGAGGCTATGCTTCGAAATACCCAAGCATTATAAGTAACAACAC GGGGCGAGGTGTGGGCCACGTCACTGGAGACTCAACAATGGCCCTTCCCT AGTAGTTAGGAGGGGACGTTTCCCAAACCCGAAGTTTCCACTTAGGGCTG TCGGCAGTGCACGCAAGGTCGTGTCGCAAGACGGGCCAACGAGTATGTAG AGTACATGCGAGTACGTACTTGTGTACTTTGAAGCGTATGTTTTACATTG AGGTATTGGAAGTATTATACATATGCGAGAAGGAGCAGAGACGAGGATCG TTCGGGTCCAGGGCCTGCGCAGAGGCGTGAGTACACACTACGCATGACAC AGGGCGGAAGCCGCAGAAAGCAGGGTTGCCTCTACCCGGTTGCCCAACTC GCTTTCTTTTGTTTGCCACACGAACGGGCGAGGTGCAGGCCACTGCAGAA CCAACTACAGTACTCGGGACAGACTGTTCTGTTATTGCCTGCTTTCATTC CCGCCCCTTTTCGGCGGCCCAGGGGCGGAGCTGGTGCTGGCCAACGACCC GGACGGGGACAGGCTGGCCGCGGCTGAGAGGCAGCCTGACGGCAGCTGGC ACACCTTTTCGGGAGACCAGATCGGGGTGGGTGTGGTTTCTTTGAAGTGG TTGCGTACTGTACTGTGTGTGCTGTAGTGTAGTGTACTGTACGAGTAGTG ATTGGGGTACTGTGTATACCGCAGGAGTGTGCCCACTGGCCGCGGCCGAG AGGCAGCCTGACGGCAGCTGACGCACCTTTTCGGGAGACCAGATTGGGGT GGGTGGGTGTGGTTTCGTCGCGGTGGTTGTGTAGGAGTACTGTGTTTGCT GTAGTGTGGTGTAGTGTAGTGTAGTGTAGGAGTAGTGATTTGGGCACTGT GTGTACTGTAAGAGGGTACCCACAGCACTGATGTAGTGTAGTGTACCACA GCTGTGGGTACTGTGGGTAGTGATTTGAAGTTCCGGTGCTTGTACTTCTG CACTATTACTACTTGCTGCTTCAAAGTACTGGACTGCTACGTACTGCCTC CCCTGGCGAGCTAAGGAAGGGCCACTGTTGGGGTCTTTAGTGACGTGGCC TGCACTGGCCGTGTGTTGTTCATGTCAATCCTCCTCCTCCTCCTCCTCCT CCATACTAGTCCTCCTACTGCTTTTTCCACTACTACTGTACCACTACCAC CACCACCACCACCACCACCACCACCACCACTACCACTACTACTTCCAAGT ACTACTACCTTCCTCATCTCCTCTTCCTCCTCTCCCCCTCCCTTCCCTCA CACGGTTCTTCCCTGGCGAGGTACGGGAGGGCCACCATCGAGGTCTTTTG CGACGTGGCCCGCACCTCGCCCTGTCTTGTTCTTATCCTGTTATTATTAC CGAGTACTTCCAAGTACTATGTACCACTACTACTACTAGCAGTACTTCGA AGTAGTCTCAAACGTTTCTTTTTTGTGCTGCAGGTGCTTCTGGGCCACTG GCTGTGGTGCCAATGGAGGGAGGCCAACCCGTCCGCCGACCCGTCCAGGG CGGTGATGATGGCCAGCGTCGTTTCCTCCCGAATGCTGGAGGCCATGGCC AAGCAGGAGGGCTTCCGGTACGAGGACACCCTCCCGGGGTTCAAGTGGAT GGGCAACAGGGCGCACGAGCTCAAGGTAGGGTGGTGGAGGTGGTGGTGGT GGTGGCGGTGGCGGTGGCGGAGGTGGCGGTGGTGGCAGTGGTGGTGGTGG CATCGGTGGTGGTGGTGGTGGTGGTGACGGTGGTGGTGGTGGCGGCGGTG GGGGCGGTAGCGGTAGCGCTGGCAGTGACGGTGACGGTGGTGACAGTGGT GGTGGTGGTGGTGGTGGCTGTGGCCGTGGCCGTGGTGGTGGCGGTGGTGG TGGTGTTGGCATTGGTGGTGGTGGTGGTGGTAGTGATAGTGGTGGTGGTG GTGCACGCACGCTGTTCTTGTAGTTCTTGTGCCGTCTGTGCACGCACACG TTCGCATCCCAATCGGCACACTTCGGTCACTTGAACAGTACTATACTTAC CTTCACACGCATCCGCCCGTTCGCGTTCGCGCGCCAGCCTCCACCCCCCG TGTCCTGTCCGCCCACGTCTCCGCTCGCTCGCTCCTCATTTCACAAACAT ACTTCATACTCTGTCACATTTGCGCAATTCACGTTCACACACACACACAC ATTCACATGTGCGCGCGTCCGTGCGCTGCCCTGCCTGCTCGTACCTCTCC GGCCGATCGCTCGCTCGCTCGCTCACTCGCTCGGCGGCCCGCCACCCGCG CTCTCATCAGGCGCAAGGGCTAGACGTGCTGTTTGCGTACGAGGAGGCCA TCGGCTTTGGCCCAGGGGATGCGGTCTTTGAGAAGGTGAGCGACCCAGCC AAGCTGAGCGTCGGCATAAGTGACGGTCGCGGAACTCTCATGAGTACATA AGAAGTGGTGTGGATTAAGTGACTGTCGTCTGAATTAAGCTCTCGGGGGT TTCACTGAGCGACCGAGCCGAGCCGAGCGTAACTGCCATGTGCTACGTAA GAAGACTGTCGCGTTAAGCTCCCGAGGCTGTTTCACGTCTCTCTGCTTTG CGTGCGTACTGAGTACACGCACTGCAGCGCCAGTCGGTTTAGTACTTGTG TGTTCTGTCCCTCTGAATGAACTGCTGGAGTCGACCCACGCAGTTTGGGC GTGGGTCGATTCTAATCCCTACAATAGCCCCCACGCATATGCTTACTCAT CCGCTTTCAACAACCATCTTCAAAGTGTCCGCACTCCGGTATATATCGAG ATGTACGGATATTTACCAACGTTATCATAATTGTATCGACCCATGCAGTT GGGCATGTTGAACAACAAACAAAAACCCTAACCCTAACCCTACTTCACCC CCCGACCCCCCCCTTCCAGGACGGGCTTTCGGCAGCGGCCCTCTTTGCAG AAATGGCGGGGCTCCTCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3335261..3339379+

>mRNA_S-ischiensis_contig8.19717.1 ID=mRNA_S-ischiensis_contig8.19717.1|Name=mRNA_S-ischiensis_contig8.19717.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1488bp|location=Sequence derived from alignment at S-ischiensis_contig8:3335261..3339379+ (Schizocladia ischiensis KU_0333)
GGAGGAGACCCTCCCGATCCGTCCTCCCACCCCCGGTGCACGGACCCCAC
GGTAGAGGCGTCCCGCGCATACTACGCAGACGTGGCGGGGGCGCTATGTC
GGCACCCGCGGGTAAACGCGCGCTCGCCGTTAAAGGGAGGAGACCCTCCC
GATCCGTCCTCCCACCCCCGGTGCACGGACCCCACGGTAGAGGCGTCCCG
CGCATACTACGCAGACGTGGCGGGGGCGCTATGTCGGCACCCGCGGGTAA
ACGCGCGCTCGCCGTTAAAGGTGGTGCACTCTTCAATGCATGGTGTGTCG
GACCGGTGGGCGGCGGAGGCGTTCGCGGCGTTTGGGCTGAGGCCCTTCAT
CGCCGTGCCGGAGCAGCGGGAGCCGCACCCTGAGTTCCCCACCGTGGAGT
TCCCCAACCCGGAGGAGGAGGGGGCGTTAAGGCTGGCCCTGGACCTCGCC
GACGCAGAAGGTGGTGCACTCTTCAATGCATGGTGTGTCGGACCGGTGGG
CGGCGGAGGCGTTCGCGGCGTTTGGGCTGAGGCCCTTCATCGCCGTGCCG
GAGCAGCGGGAGCCGCACCCTGAGTTCCCCACCGTGGAGTTCCCCAACCC
GGAGGAGGAGGGGGCGTTAAGGCTGGCCCTGGACCTCGCCGACGCAGAAG
GGGCGGAGCTGGTGCTGGCCAACGACCCGGACGGGGACAGGCTGGCCGCG
GCTGAGAGGCAGCCTGACGGCAGCTGGCACACCTTTTCGGGAGACCAGAT
CGGGGGGCGGAGCTGGTGCTGGCCAACGACCCGGACGGGGACAGGCTGGC
CGCGGCTGAGAGGCAGCCTGACGGCAGCTGGCACACCTTTTCGGGAGACC
AGATCGGGGTGCTTCTGGGCCACTGGCTGTGGTGCCAATGGAGGGAGGCC
AACCCGTCCGCCGACCCGTCCAGGGCGGTGATGATGGCCAGCGTCGTTTC
CTCCCGAATGCTGGAGGCCATGGCCAAGCAGGAGGGCTTCCGGTACGAGG
ACACCCTCCCGGGGTTCAAGTGGATGGGCAACAGGGCGCACGAGCTCAAG
GTGCTTCTGGGCCACTGGCTGTGGTGCCAATGGAGGGAGGCCAACCCGTC
CGCCGACCCGTCCAGGGCGGTGATGATGGCCAGCGTCGTTTCCTCCCGAA
TGCTGGAGGCCATGGCCAAGCAGGAGGGCTTCCGGTACGAGGACACCCTC
CCGGGGTTCAAGTGGATGGGCAACAGGGCGCACGAGCTCAAGGCGCAAGG
GCTAGACGTGCTGTTTGCGTACGAGGAGGCCATCGGCTTTGGCCCAGGGG
ATGCGGTCTTTGAGAAGGCGCAAGGGCTAGACGTGCTGTTTGCGTACGAG
GAGGCCATCGGCTTTGGCCCAGGGGATGCGGTCTTTGAGAAGGACGGGCT
TTCGGCAGCGGCCCTCTTTGCAGAAATGGCGGGGCTCCTCGACGGGCTTT
CGGCAGCGGCCCTCTTTGCAGAAATGGCGGGGCTCCTC
back to top