mRNA_S-ischiensis_contig8.19710.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19710.1
Unique NamemRNA_S-ischiensis_contig8.19710.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A835YSF8_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.520e-57
Identity = 88/112 (78.57%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  261 KRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQLNMSV 596
            KR V+KW+ EED+LM  LV E+GT+QWGLIG  L+ RTGKQCRERWHNQLDP IKK+ WT+EEEE+LM AHS HGNRWAEIAK+LPGRTDN+IKNHWNSAKRRLSRQLNMS+
Sbjct:   28 KRVVRKWSPEEDQLMALLVKEHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPHIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLSRQLNMSM 139          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A835YW24_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW24_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.680e-55
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 3
Query:  261 KRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLS 575
            KRSV+KW+ EED+LM+ LV E+GT+QWGLIG  L+ RTGKQCRERWHNQLDP IKK+ WT+EEEE+LM AHS HGNRWAEIAK+LPGRTDN+IKNHWNSAKRRLS
Sbjct:    3 KRSVRKWSPEEDQLMMLLVREHGTRQWGLIGSLLSGRTGKQCRERWHNQLDPMIKKDAWTREEEEVLMQAHSVHGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLS 107          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A6H5JK21_9PHAE (MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK21_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.950e-53
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 3
Query:  219 VDVGLVLDTLDHKRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNN----RTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQLNMSVST 602
            +D   +L+ LD KRKR V+KW+ +ED  MV+LV E G KQWGLIG +L++    RTGKQCRERWHNQLDP IKK+PWTK EE+ LM AHS HGN+WAEIAK+LPGRTDN+IKNHWNSAKRRLSRQLNMSV++
Sbjct:    6 IDHSDILNALDAKRKRCVRKWSKQEDAEMVKLVLELGVKQWGLIGSRLSSLGGDRTGKQCRERWHNQLDPAIKKDPWTKAEEDTLMRAHSIHGNKWAEIAKILPGRTDNAIKNHWNSAKRRLSRQLNMSVNS 137          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A7S2CJK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CJK5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.080e-50
Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 3
Query:  255 KRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQL 584
            K +R V+KWT EED LM+ LV E+GTK WG IG  L  RTGKQCRERWHNQLDP I+K+PWT  EEEIL+ AHS +GNRWAEIAK+LPGRTDN++KNHWNSAKRRLSRQ+
Sbjct:   43 KPRRVVRKWTPEEDSLMMTLVQEHGTKHWGRIGSSLQGRTGKQCRERWHNQLDPAIRKDPWTGGEEEILLKAHSLYGNRWAEIAKLLPGRTDNAVKNHWNSAKRRLSRQV 152          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A7S0SQE8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQE8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.300e-49
Identity = 81/112 (72.32%), Postives = 94/112 (83.93%), Query Frame = 3
Query:  246 LDHKRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQ 581
            L + +KR+V+KWT EED LM+ LV+E+GT+ WGLIG KLN RTGKQCRERWHNQLDP I K PWT+ EE +L+ AH+  GNRWAEIAK LPGRTDN+IKNHWNSAKRRL RQ
Sbjct:   10 LSNGQKRTVRKWTQEEDNLMMALVSEHGTRHWGLIGAKLNGRTGKQCRERWHNQLDPAINKTPWTEHEESLLLAAHNDLGNRWAEIAKRLPGRTDNAIKNHWNSAKRRLLRQ 121          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: I2CQ47_NANGC (Myb transcription factor (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ47_NANGC)

HSP 1 Score: 160 bits (406), Expect = 1.500e-46
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 3
Query:  261 KRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLS 575
            K+ V+KW+AEED  MVRLV E GTKQWG IG +L  R+GKQCRERWHNQLDP+IKKE W+ EEE +L   H+ +GNRWAEIA+ LPGRTDN+IKNHWN+A+RR+S
Sbjct:   20 KKMVRKWSAEEDAEMVRLVKELGTKQWGQIGIQLGGRSGKQCRERWHNQLDPNIKKEAWSAEEEMVLQQKHAEYGNRWAEIARFLPGRTDNAIKNHWNNARRRMS 124          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A024GD84_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GD84_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.520e-46
Identity = 76/115 (66.09%), Postives = 90/115 (78.26%), Query Frame = 3
Query:  255 KRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQLNMSVS 599
            K ++ V KWT EED +M++LV  YGT+ W +IG KL  R GKQCRERWHNQLDP I+K+PWT EEE IL  AH  +GN+WAEIAK LPGRTDN+IKNHWNS+KRRL R   MS+S
Sbjct:   25 KDRKPVSKWTDEEDNMMIKLVERYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDNAIKNHWNSSKRRLKRSR-MSIS 138          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A7R9U0E6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0E6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.630e-46
Identity = 78/110 (70.91%), Postives = 95/110 (86.36%), Query Frame = 3
Query:  255 KRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSRQL 584
            ++KR V+KWT EED+LM+ LV  +GTK+WGLIG +L  RTGKQCRERWHNQLDP I+K+PW+K+EE IL+  H   GNRWAEIAK+LPGRTDN+IKNHWNSAKRRL+RQ+
Sbjct:   18 RKKRQVRKWTPEEDKLMMDLVNTFGTKRWGLIGGRLQGRTGKQCRERWHNQLDPSIRKDPWSKQEEAILIVVHQQVGNRWAEIAKLLPGRTDNAIKNHWNSAKRRLTRQM 127          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: A0A8K1FIZ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIZ4_PYTOL)

HSP 1 Score: 165 bits (417), Expect = 6.210e-46
Identity = 76/122 (62.30%), Postives = 94/122 (77.05%), Query Frame = 3
Query:  234 VLDTLDH-------KRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSR 578
            +LD  DH       K ++ V KWT +ED++M++LV +YGT+ W +IG KL  R GKQCRERWHNQLDP I+K+PWT EEE IL  +H  +GN+WAEIAKMLPGRTDN+IKNHWNS+KRRL R
Sbjct:   13 LLDDEDHYRGSKKRKERKPVCKWTEKEDQMMIKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKDPWTDEEERILRESHELYGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 134          
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Match: D0MS64_PHYIT (Myb-like DNA-binding protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS64_PHYIT)

HSP 1 Score: 163 bits (412), Expect = 2.090e-45
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = 3
Query:  237 LDTLDHKRKRSVKKWTAEEDELMVRLVAEYGTKQWGLIGPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAEIAKMLPGRTDNSIKNHWNSAKRRLSR 578
            LD    K ++ V KWT +ED LM++LV +YGT+ W +IG KL  R GKQCRERWHNQLDP I+KEPWT EEE IL   H   GN+WAEIAKMLPGRTDN+IKNHWNS+KRRL R
Sbjct:   21 LDPPTRKERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPGRNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDNAIKNHWNSSKRRLKR 134          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSF8_9STRA1.520e-5778.57Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A835YW24_9STRA3.680e-5579.05Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A6H5JK21_9PHAE1.950e-5370.45MYB protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2CJK5_9STRA2.080e-5073.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0SQE8_9STRA1.300e-4972.32Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
I2CQ47_NANGC1.500e-4669.52Myb transcription factor (Fragment) n=1 Tax=Nannoc... [more]
A0A024GD84_9STRA2.520e-4666.09Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7R9U0E6_9STRA2.630e-4670.91Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1FIZ4_PYTOL6.210e-4662.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MS64_PHYIT2.090e-4566.67Myb-like DNA-binding protein, putative n=2 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3282321..3283178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue2.4e-47
Seed eggNOG ortholog2880.D8LCT4
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006800.1
Exons2
Model size730
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19710.1prot_S-ischiensis_contig8.19710.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3282521..3283178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.5569584-UTR-S-ischiensis_contig8:3282320..32825201622817298.5569584-UTR-S-ischiensis_contig8:3282320..3282520Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3282321..3282520 +
1695741006.5045607-UTR-S-ischiensis_contig8:3282320..32825201695741006.5045607-UTR-S-ischiensis_contig8:3282320..3282520Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3282321..3282520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817298.5682266-CDS-S-ischiensis_contig8:3282520..32827141622817298.5682266-CDS-S-ischiensis_contig8:3282520..3282714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3282521..3282714 +
1695741006.5169566-CDS-S-ischiensis_contig8:3282520..32827141695741006.5169566-CDS-S-ischiensis_contig8:3282520..3282714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3282521..3282714 +
1622817298.5790935-CDS-S-ischiensis_contig8:3282844..32831781622817298.5790935-CDS-S-ischiensis_contig8:3282844..3283178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3282845..3283178 +
1695741006.5276608-CDS-S-ischiensis_contig8:3282844..32831781695741006.5276608-CDS-S-ischiensis_contig8:3282844..3283178Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3282845..3283178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19710.1

>prot_S-ischiensis_contig8.19710.1 ID=prot_S-ischiensis_contig8.19710.1|Name=mRNA_S-ischiensis_contig8.19710.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MSATQGVDVGLVLDTLDHKRKRSVKKWTAEEDELMVRLVAEYGTKQWGLI
GPKLNNRTGKQCRERWHNQLDPDIKKEPWTKEEEEILMHAHSTHGNRWAE
IAKMLPGRTDNSIKNHWNSAKRRLSRQLNMSVSTGSRSKGGAAYGAPLSV
DGDGCSPSPTSVADFPANQVNIFSSR
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mRNA from alignment at S-ischiensis_contig8:3282321..3283178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19710.1 ID=mRNA_S-ischiensis_contig8.19710.1|Name=mRNA_S-ischiensis_contig8.19710.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig8:3282321..3283178+ (Schizocladia ischiensis KU_0333)
CCTTAGTATAGGGGTGTTAAGCCGAGAGGGAAGGGCCATAGAGCAAGGAC GAGAGGGCCGACACGGGCAGCGCGCAGCGGTGCCAGGCGGGGGCCAAAGT GAGGCCCACTCCAGGGTGACCTCGTGCGTGCCCTGGGCGTGTTTTTTCAG CGTGGATAAGGGTCCGTGCCCTCTGGGGCGGCGAGCCACCGGCTTTGGTC ATGTCGGCGACTCAGGGTGTCGATGTTGGGCTCGTCTTGGACACGTTGGA CCACAAACGGAAGCGGAGCGTAAAAAAATGGACTGCCGAGGAGGATGAGC TGATGGTGCGGCTGGTTGCAGAGTACGGGACAAAACAATGGGGCTTGATA GGCCCAAAGCTGAACAACAGAACGGGCAAGCAGTGCCGCGAAAGGTAAGC GAACGCGGGCGTGCCCGCGCGCGGGCGCCCTTGCAGTGTGCCCCAAATCT CGCAGTCTAGTCCGGTACCACGCCTGACAATCGCCCCGGCACCCCCCGCG CCGCGCCCAACCTGGCTTGGCCAGGTGGCACAACCAGCTCGACCCTGACA TCAAGAAGGAGCCTTGGACTAAGGAGGAGGAGGAGATCCTGATGCACGCC CACAGCACCCACGGGAACCGCTGGGCAGAGATCGCCAAGATGCTCCCGGG GCGGACGGACAACTCCATCAAGAACCACTGGAACTCGGCCAAGCGACGGT TATCCCGGCAGCTCAACATGTCCGTCTCTACGGGCAGCAGGAGCAAGGGC GGGGCTGCGTACGGCGCCCCGCTCTCGGTCGACGGGGACGGCTGCTCCCC CTCCCCCACCTCCGTCGCGGACTTCCCGGCCAACCAGGTCAACATCTTCA GCAGCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3282321..3283178+

>mRNA_S-ischiensis_contig8.19710.1 ID=mRNA_S-ischiensis_contig8.19710.1|Name=mRNA_S-ischiensis_contig8.19710.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig8:3282321..3283178+ (Schizocladia ischiensis KU_0333)
ATGTCGGCGACTCAGGGTGTCGATGTTGGGCTCGTCTTGGACACGTTGGA
CCACAAACGGAAGCGGAGCGTAAAAAAATGGACTGCCGAGGAGGATGAGC
TGATGGTGCGGCTGGTTGCAGAGTACGGGACAAAACAATGGGGCTTGATA
GGCCCAAAGCTGAACAACAGAACGGGCAAGCAGTGCCGCGAAAGATGTCG
GCGACTCAGGGTGTCGATGTTGGGCTCGTCTTGGACACGTTGGACCACAA
ACGGAAGCGGAGCGTAAAAAAATGGACTGCCGAGGAGGATGAGCTGATGG
TGCGGCTGGTTGCAGAGTACGGGACAAAACAATGGGGCTTGATAGGCCCA
AAGCTGAACAACAGAACGGGCAAGCAGTGCCGCGAAAGGTGGCACAACCA
GCTCGACCCTGACATCAAGAAGGAGCCTTGGACTAAGGAGGAGGAGGAGA
TCCTGATGCACGCCCACAGCACCCACGGGAACCGCTGGGCAGAGATCGCC
AAGATGCTCCCGGGGCGGACGGACAACTCCATCAAGAACCACTGGAACTC
GGCCAAGCGACGGTTATCCCGGCAGCTCAACATGTCCGTCTCTACGGGCA
GCAGGAGCAAGGGCGGGGCTGCGTACGGCGCCCCGCTCTCGGTCGACGGG
GACGGCTGCTCCCCCTCCCCCACCTCCGTCGCGGACTTCCCGGCCAACCA
GGTCAACATCTTCAGCAGCAGGGTGGCACAACCAGCTCGACCCTGACATC
AAGAAGGAGCCTTGGACTAAGGAGGAGGAGGAGATCCTGATGCACGCCCA
CAGCACCCACGGGAACCGCTGGGCAGAGATCGCCAAGATGCTCCCGGGGC
GGACGGACAACTCCATCAAGAACCACTGGAACTCGGCCAAGCGACGGTTA
TCCCGGCAGCTCAACATGTCCGTCTCTACGGGCAGCAGGAGCAAGGGCGG
GGCTGCGTACGGCGCCCCGCTCTCGGTCGACGGGGACGGCTGCTCCCCCT
CCCCCACCTCCGTCGCGGACTTCCCGGCCAACCAGGTCAACATCTTCAGC
AGCAGG
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