mRNA_S-ischiensis_contig8.19709.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19709.1
Unique NamemRNA_S-ischiensis_contig8.19709.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3280908..3282102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1195
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19709.1prot_S-ischiensis_contig8.19709.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3281023..3281784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.6149492-UTR-S-ischiensis_contig8:3280907..32810221622817268.6149492-UTR-S-ischiensis_contig8:3280907..3281022Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3280908..3281022 +
1695740982.152247-UTR-S-ischiensis_contig8:3280907..32810221695740982.152247-UTR-S-ischiensis_contig8:3280907..3281022Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3280908..3281022 +
1622817268.6389565-UTR-S-ischiensis_contig8:3281784..32821021622817268.6389565-UTR-S-ischiensis_contig8:3281784..3282102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3281785..3282102 +
1695740982.1823335-UTR-S-ischiensis_contig8:3281784..32821021695740982.1823335-UTR-S-ischiensis_contig8:3281784..3282102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3281785..3282102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.62714-CDS-S-ischiensis_contig8:3281022..32817841622817268.62714-CDS-S-ischiensis_contig8:3281022..3281784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3281023..3281784 +
1695740982.1675153-CDS-S-ischiensis_contig8:3281022..32817841695740982.1675153-CDS-S-ischiensis_contig8:3281022..3281784Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3281023..3281784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19709.1

>prot_S-ischiensis_contig8.19709.1 ID=prot_S-ischiensis_contig8.19709.1|Name=mRNA_S-ischiensis_contig8.19709.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=254bp
MDVCGADTFRTVKARERSLLPVHFVCYPRNNNNTSPAPPLGAARHRERPA
GFVLFVRDGTDAPAVSPRRIRPGPPGGATPTAKYTRAAICTESSRDTVCL
GCCCYAYHQALQPLPLPSKPNIRGTRPPPPPRLPVPTGGKTAQSGEDTGH
STRHDTDPPCRLGRRNPLPGPTPPRSCCADLLSRNRHQVQAAVGLPRNDR
RLCCWGGGEASSRRREFSGGSTSIAPVPATLASAAAAPRKTSPPLTRHVP
AGK*
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mRNA from alignment at S-ischiensis_contig8:3280908..3282102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19709.1 ID=mRNA_S-ischiensis_contig8.19709.1|Name=mRNA_S-ischiensis_contig8.19709.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1195bp|location=Sequence derived from alignment at S-ischiensis_contig8:3280908..3282102+ (Schizocladia ischiensis KU_0333)
CCCCGCCCACCCGCGGGCACGCCTTGCGCCCCAGCGCGGCGACGGCGAGC
TAAAACTATCACTCACATAAAGCGCGATAACTATGTAACTCTACTTGTAT
TCTACTGTACTGTACATGGACGTGTGTGGTGCAGATACTTTCAGGACAGT
CAAGGCCAGAGAGCGCTCGCTCTTGCCTGTGCACTTCGTATGCTACCCCC
GCAACAACAATAATACGTCGCCTGCCCCCCCGTTGGGTGCGGCGCGGCAC
AGAGAGCGACCGGCGGGGTTCGTGCTCTTTGTGCGGGACGGTACGGACGC
ACCCGCCGTGTCGCCACGCAGGATACGGCCCGGTCCCCCAGGGGGTGCCA
CCCCAACTGCCAAGTACACACGGGCAGCCATTTGTACGGAAAGCTCAAGG
GACACCGTCTGTCTCGGCTGTTGCTGCTACGCATATCATCAGGCGCTCCA
GCCATTGCCCCTCCCCTCTAAACCAAACATTCGTGGCACCCGCCCACCCC
CACCGCCACGGTTGCCTGTTCCCACTGGTGGTAAAACCGCACAAAGTGGG
GAGGACACCGGCCACAGCACACGTCATGACACGGACCCACCTTGTCGCCT
GGGTCGGAGGAATCCGCTTCCCGGCCCAACCCCCCCACGAAGCTGCTGCG
CAGACTTGCTGTCCCGAAACCGCCATCAGGTGCAAGCGGCAGTTGGACTC
CCGCGGAACGATCGCCGCTTGTGTTGCTGGGGCGGAGGTGAGGCGTCCAG
CCGCCGGCGGGAGTTCAGCGGCGGTTCAACGTCCATCGCACCAGTGCCCG
CCACGCTTGCATCCGCGGCCGCGGCCCCAAGGAAGACCAGCCCCCCCTTG
ACACGGCATGTCCCGGCAGGGAAGTAGCCGTGAAACCCAGCCCCGTTGGG
CGTCCGCATCTCAACGACGACAATGCCATCGGTTCGCATGTGAACGACCT
GCCCAGGGCCATAAGGCGTGCTCACTGCGAGACCCGGGTGCATGGTTTCG
CTCCTGTGAGCTGAGCGTATCCGAGCCGGCCCTGCGGGTCCCGCACCAGC
CGCACCACCCAGCCGATGGCCCACGCCCGGTCAATTATGACCCGTGTGAC
AGTCGGCGTGTTGTGCAGGCCCCTCGACGGCCGTCCCTGCCACCTGCGTG
TCCTTCCTTGTCCTCCTGCAGCAAACAGGTGGCCGCACCCCGTCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3280908..3282102+

>mRNA_S-ischiensis_contig8.19709.1 ID=mRNA_S-ischiensis_contig8.19709.1|Name=mRNA_S-ischiensis_contig8.19709.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1524bp|location=Sequence derived from alignment at S-ischiensis_contig8:3280908..3282102+ (Schizocladia ischiensis KU_0333)
ATGGACGTGTGTGGTGCAGATACTTTCAGGACAGTCAAGGCCAGAGAGCG
CTCGCTCTTGCCTGTGCACTTCGTATGCTACCCCCGCAACAACAATAATA
CGTCGCCTGCCCCCCCGTTGGGTGCGGCGCGGCACAGAGAGCGACCGGCG
GGGTTCGTGCTCTTTGTGCGGGACGGTACGGACGCACCCGCCGTGTCGCC
ACGCAGGATACGGCCCGGTCCCCCAGGGGGTGCCACCCCAACTGCCAAGT
ACACACGGGCAGCCATTTGTACGGAAAGCTCAAGGGACACCGTCTGTCTC
GGCTGTTGCTGCTACGCATATCATCAGGCGCTCCAGCCATTGCCCCTCCC
CTCTAAACCAAACATTCGTGGCACCCGCCCACCCCCACCGCCACGGTTGC
CTGTTCCCACTGGTGGTAAAACCGCACAAAGTGGGGAGGACACCGGCCAC
AGCACACGTCATGACACGGACCCACCTTGTCGCCTGGGTCGGAGGAATCC
GCTTCCCGGCCCAACCCCCCCACGAAGCTGCTGCGCAGACTTGCTGTCCC
GAAACCGCCATCAGGTGCAAGCGGCAGTTGGACTCCCGCGGAACGATCGC
CGCTTGTGTTGCTGGGGCGGAGGTGAGGCGTCCAGCCGCCGGCGGGAGTT
CAGCGGCGGTTCAACGTCCATCGCACCAGTGCCCGCCACGCTTGCATCCG
CGGCCGCGGCCCCAAGGAAGACCAGCCCCCCCTTGACACGGCATGTCCCG
GCAGGGAAGTAGATGGACGTGTGTGGTGCAGATACTTTCAGGACAGTCAA
GGCCAGAGAGCGCTCGCTCTTGCCTGTGCACTTCGTATGCTACCCCCGCA
ACAACAATAATACGTCGCCTGCCCCCCCGTTGGGTGCGGCGCGGCACAGA
GAGCGACCGGCGGGGTTCGTGCTCTTTGTGCGGGACGGTACGGACGCACC
CGCCGTGTCGCCACGCAGGATACGGCCCGGTCCCCCAGGGGGTGCCACCC
CAACTGCCAAGTACACACGGGCAGCCATTTGTACGGAAAGCTCAAGGGAC
ACCGTCTGTCTCGGCTGTTGCTGCTACGCATATCATCAGGCGCTCCAGCC
ATTGCCCCTCCCCTCTAAACCAAACATTCGTGGCACCCGCCCACCCCCAC
CGCCACGGTTGCCTGTTCCCACTGGTGGTAAAACCGCACAAAGTGGGGAG
GACACCGGCCACAGCACACGTCATGACACGGACCCACCTTGTCGCCTGGG
TCGGAGGAATCCGCTTCCCGGCCCAACCCCCCCACGAAGCTGCTGCGCAG
ACTTGCTGTCCCGAAACCGCCATCAGGTGCAAGCGGCAGTTGGACTCCCG
CGGAACGATCGCCGCTTGTGTTGCTGGGGCGGAGGTGAGGCGTCCAGCCG
CCGGCGGGAGTTCAGCGGCGGTTCAACGTCCATCGCACCAGTGCCCGCCA
CGCTTGCATCCGCGGCCGCGGCCCCAAGGAAGACCAGCCCCCCCTTGACA
CGGCATGTCCCGGCAGGGAAGTAG
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