mRNA_S-ischiensis_contig8.19696.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: D7FUR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR0_ECTSI) HSP 1 Score: 108 bits (270), Expect = 1.130e-24 Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 418 VGAPCVHAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLV 759
VGA +H V+LGAP+ R + ET + SL +++ T PV H P EA L G R A E GA++PA C+ GAWLGAIP CLDW QPWQ WPL + GGL G+++G L+
Sbjct: 106 VGAAVIHTVAVVLGAPIFRRAPETAAFSLLMSSFTSLPVSVTSHRPLEAFAAFLRGTRPALH-ELGAMVPAACCVLGAWLGAIPLCLDWEQPWQAWPLPMCAGGLLGFSLGCLL 218
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: UPI00053C7E47 (phosphatidylinositol-glycan biosynthesis class F protein-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C7E47) HSP 1 Score: 90.1 bits (222), Expect = 7.060e-18 Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 379 YIRSACRVLTSLLVGAPCVHAGMVLLGAPL-LRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVA 762
Y R+A R + L+ GA G ++LGAP+ L+ W+T++ SL ++ T+ P AV + W + S + S + +PA + GAW GA P LDW +PWQ WP++V+ G +GGY G LV+
Sbjct: 87 YWRAAARSIIGLVTGALVNALGAIVLGAPVGLQYLWKTINWSLLMSVFTFVPAAAVFGASWADWHRMFSCMKPTSNRDYMITVPAYGAIIGAWFGAWPMPLDWERPWQEWPISVSYGAIGGYIAGKLVS 215
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: A0A1D1UUN6_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UUN6_RAMVA) HSP 1 Score: 89.0 bits (219), Expect = 2.040e-17 Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 442 GMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLV 759
G++L GAP+L +S ETL+ ++ LAT + P C V P + LK L E+ E+ + P + + GAW GA+ LDW++PWQ WP+ G GYAVG L+
Sbjct: 102 GIILFGAPILDSSMETLTLAMLLATTAFLPFCYVYAQPVDELLKVLQTEKLDLSMEKAPLFPGMLAVVGAWCGAVVIPLDWDRPWQAWPIPCCYGAFAGYAVGHLL 207
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: S4RV09_PETMA (Phosphatidylinositol glycan anchor biosynthesis, class F n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RV09_PETMA) HSP 1 Score: 85.1 bits (209), Expect = 6.930e-17 Identity = 45/115 (39.13%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 436 HAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVAGACLAR 780
HA +L GAP++ + ET S+ L T T P + A L+ + A S E+G + + L GAWLGA+P LDW++PWQ WP+T ++G + GYA+G L++ LAR
Sbjct: 16 HAVTILFGAPVIHLARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPWQAWPITCSMGAICGYALGLLLSLLRLAR 130
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: UPI00053CA89B (phosphatidylinositol-glycan biosynthesis class F protein isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA89B) HSP 1 Score: 85.5 bits (210), Expect = 3.740e-16 Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 1
Query: 379 YIRSACRVLTSLLVGAPCVHAGMVLLGAPL-LRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVA 762
Y R+A R + L+ GA +G + LGAP+ L+ W+T++ S ++ T+ P AV + W + + + + E V+PA + GAW GA P LDW +PWQ WP+ V+ G + GYA G LV+
Sbjct: 89 YWRAAARSVVGLVTGALINASGAIALGAPVGLQYLWKTINWSFLMSVFTFVPAAAVFGASWADWHRAYACMKPTASREYMIVVPAYGAIIGAWFGAWPMPLDWERPWQEWPVCVSYGAIVGYAFGQLVS 217
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: UPI0014031A22 (phosphatidylinositol-glycan biosynthesis class F protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014031A22) HSP 1 Score: 85.1 bits (209), Expect = 4.380e-16 Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 436 HAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVAGACLAR 780
HA VL GAP++ + ET S+ L T T P + A L+ + A S E+G + + L GAWLGA+P LDW++PWQ WP+T ++G + GYA+G L++ LAR
Sbjct: 98 HAVTVLFGAPVIHLARETFVFSILLTTFTALPCLCILGPNLSAWLRVFTRSGAVSVWEQGLCVGTMCTLMGAWLGALPIPLDWDRPWQAWPITCSMGAVCGYALGLLLSLLRLAR 212
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: UPI000D72AE72 (phosphatidylinositol-glycan biosynthesis class F protein-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72AE72) HSP 1 Score: 85.9 bits (211), Expect = 7.890e-16 Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 1
Query: 352 TRGAFVAAGYIRSACRVLTSL-----LVGAPCV--HAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVA 762
T GA++A + SA + S+ +VG C+ H VL GAP + +S ET ++ L+TLT P C + S + R+ AE L ++ L GAWLGA P LDW++PWQ+WP++ LG L GY +G L A
Sbjct: 141 TGGAYIALAALSSARFSVKSIFKCCFIVGLSCIVYHFIAVLFGAPAIESSRETFHFAMLLSTLTVVPSCCLLGSDISRWSTVYASFRSTLGAETAVYLTSVCTLAGAWLGAFPIPLDWDRPWQVWPISCVLGSLFGYCLGLLAA 284
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: A0A433DJS2_9FUNG (GPI biosynthesis protein Pig-F n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DJS2_9FUNG) HSP 1 Score: 84.0 bits (206), Expect = 9.420e-16 Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 415 LVGAPCVHAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVAG 765
+ G +H +L GAPL+ T +L+++ LT P V + +A L+ + R SRAE+ P ++ +FGAWLGAI LDW++PWQ WP++ + G+++G LVAG
Sbjct: 77 IAGTVVIHTFAILFGAPLIEKFRNTFMFALYVSLLTVFPATCVLRADPDAWLRVFAEHRPTSRAEKSIYFPTIFTIFGAWLGAIVIPLDWDRPWQAWPISCVISAFLGHSLG-LVAG 192
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: A0A371CZU1_9APHY (PIG-F-domain-containing protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371CZU1_9APHY) HSP 1 Score: 84.7 bits (208), Expect = 2.240e-15 Identity = 52/130 (40.00%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 415 LVGAPCVHAGMVLLGAPLLRASWETLSCSLFLATLTWQPVCAVCHSP--------------WEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVA 762
L G+ +A +L GAPLL +T + SL L+ LT P + P W ELS + ER V PA+ + GAWLGAIP LDW +PWQ WPLT G +GGY G+LVA
Sbjct: 155 LAGSAVFYAMTILFGAPLLSHPLQTYAMSLLLSVLTVLPPAYIFGPPYLGSDSPSLVSRLTWIRLFAELSPR---TSIERALVYPAIGAVTGAWLGAIPIGLDWERPWQAWPLTPTYGAVGGYIAGSLVA 281
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Match: A0A067L0I8_JATCU (Uncharacterized protein n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067L0I8_JATCU) HSP 1 Score: 82.4 bits (202), Expect = 5.050e-15 Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 379 YIRSACRVLTSLLVGAPCVHAGMVLLGAPL-LRASWETLSCSLFLATLTWQPVCAVCHSPWEACLKELSGERAASRAERGAVLPALWCLFGAWLGAIPTCLDWNQPWQLWPLTVALGGLGGYAVGTLVA 762
Y+++ R + +LLVGA G ++LGAP+ ++ +T++ SL +++ T+ P +V S W + + + E +PA + GAW GA P LDW +PWQ WP+ V G + GY VGT+V+
Sbjct: 89 YLKAVGRGMLALLVGALLNATGAIVLGAPVGIQYFPKTINWSLLMSSFTFVPAASVFGSSWSHWQRVFAHTKPVESLEYMICMPAHGAIIGAWFGAWPMPLDWERPWQEWPICVTYGAMTGYLVGTVVS 217 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19696.1 >prot_S-ischiensis_contig8.19696.1 ID=prot_S-ischiensis_contig8.19696.1|Name=mRNA_S-ischiensis_contig8.19696.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=227bp MPPDPGNSANGRKFPEGAALALQLLGAFIVLQLWRPLLNGPRLDERAELDback to top mRNA from alignment at S-ischiensis_contig8:3228075..3232627+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig8.19696.1 ID=mRNA_S-ischiensis_contig8.19696.1|Name=mRNA_S-ischiensis_contig8.19696.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4553bp|location=Sequence derived from alignment at S-ischiensis_contig8:3228075..3232627+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig8:3228075..3232627+ >mRNA_S-ischiensis_contig8.19696.1 ID=mRNA_S-ischiensis_contig8.19696.1|Name=mRNA_S-ischiensis_contig8.19696.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1362bp|location=Sequence derived from alignment at S-ischiensis_contig8:3228075..3232627+ (Schizocladia ischiensis KU_0333)back to top |