mRNA_S-ischiensis_contig8.19694.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19694.1
Unique NamemRNA_S-ischiensis_contig8.19694.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 7.600e-28
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:   40 QRPQLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLFTGVTGG 273
            QRPQLTLLLR LRDGV  PL+RVPC VA+ LA+A+E +A  PGSE+YR VNSFLLHRPFV L ++PLF  LFTGV  G
Sbjct: 1990 QRPQLTLLLRCLRDGVETPLQRVPCAVAVVLAKASEALAASPGSEIYRVVNSFLLHRPFVRLDELPLFDVLFTGVQQG 2067
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.040e-27
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:   40 QRPQLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLFTGVTGG 273
            QRPQLTLLLR LRDGV  PL+RVPC VA+ LA+A+E +A  PGSE+YR VNSFLLHRPFV L ++PLF  LFTGV  G
Sbjct: 2620 QRPQLTLLLRCLRDGVETPLQRVPCAVAVVLAKASEALASSPGSEIYRVVNSFLLHRPFVRLDELPLFDVLFTGVQQG 2697
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: A0A835ZKE6_9STRA (NopRA1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKE6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.470e-14
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   49 QLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLFTG 261
            QL LLLR LRDGV  P  RVP +VA++LA AA+V+A  P  + Y  +N FLL RP + +++VP FT L +G
Sbjct:  389 QLLLLLRSLRDGVTDPSARVPTLVAVSLAHAADVLASTPAHDAYVAINRFLLRRPNIKMNEVPFFTTLVSG 459
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: L8HLC0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLC0_ACACA)

HSP 1 Score: 56.6 bits (135), Expect = 2.740e-7
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   40 QRPQLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPL 252
            +RPQ+T LLR +R+ +    +R+P  +A   A AA VV   P   +Y+ VN+FLLHRP + L D+P+   L
Sbjct: 1586 ERPQITQLLRAVRNAMVEAFQRLPAYIASFTAHAALVVL-TPEHGLYKPVNAFLLHRPALVLGDIPMLYEL 1655
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: A0A7J7NM77_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NM77_9MAGN)

HSP 1 Score: 52.8 bits (125), Expect = 6.250e-6
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   49 QLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLFTGVT 267
            +L LLL  L++G+ +P +R+P V+A+  A A+ V+  DP  + Y T++  L+    V+L  VPLF  +F  ++
Sbjct: 2022 RLRLLLTYLQNGIEKPWQRIPSVIAIFAAEASFVLL-DPSHDHYLTISKLLMRSSRVNLKSVPLFYTMFDSIS 2093
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BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Match: A0A0N4U150_DRAME (NopRA1 domain-containing protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4U150_DRAME)

HSP 1 Score: 50.1 bits (118), Expect = 5.180e-5
Identity = 26/72 (36.11%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   40 QRPQLTLLLRVLRDGVRRPLERVPCVVALALARAAEVVACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLF 255
            ++P    LLR+ R+ + RP ER+P VV+   AR ++++  +P   VY ++ +FL  +P V + +VP F  LF
Sbjct:  254 EKPLFAYLLRIFRNSIPRPNERLPHVVSHFFARTSKLLL-NPSDSVYASILAFLTLKPTVDIGNVPEFYKLF 324
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8A9_ECTSI7.600e-2870.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE1.040e-2770.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZKE6_9STRA8.470e-1452.11NopRA1 domain-containing protein n=1 Tax=Tribonema... [more]
L8HLC0_ACACA2.740e-742.25Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7J7NM77_9MAGN6.250e-635.62Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A0N4U150_DRAME5.180e-536.11NopRA1 domain-containing protein n=1 Tax=Dracuncul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3218287..3220609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19694.1prot_S-ischiensis_contig8.19694.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3218287..3220609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817297.9125295-CDS-S-ischiensis_contig8:3218286..32183781622817297.9125295-CDS-S-ischiensis_contig8:3218286..3218378Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3218287..3218378 +
1695741006.0904908-CDS-S-ischiensis_contig8:3218286..32183781695741006.0904908-CDS-S-ischiensis_contig8:3218286..3218378Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3218287..3218378 +
1622817297.924299-CDS-S-ischiensis_contig8:3219361..32194631622817297.924299-CDS-S-ischiensis_contig8:3219361..3219463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3219362..3219463 +
1695741006.1086502-CDS-S-ischiensis_contig8:3219361..32194631695741006.1086502-CDS-S-ischiensis_contig8:3219361..3219463Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3219362..3219463 +
1622817297.9366944-CDS-S-ischiensis_contig8:3220530..32206091622817297.9366944-CDS-S-ischiensis_contig8:3220530..3220609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3220531..3220609 +
1695741006.1186197-CDS-S-ischiensis_contig8:3220530..32206091695741006.1186197-CDS-S-ischiensis_contig8:3220530..3220609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3220531..3220609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19694.1

>prot_S-ischiensis_contig8.19694.1 ID=prot_S-ischiensis_contig8.19694.1|Name=mRNA_S-ischiensis_contig8.19694.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
SSSGVRGRGDSNSQRPQLTLLLRVLRDGVRRPLERVPCVVALALARAAEV
VACDPGSEVYRTVNSFLLHRPFVHLHDVPLFTPLFTGVTGG
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mRNA from alignment at S-ischiensis_contig8:3218287..3220609+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19694.1 ID=mRNA_S-ischiensis_contig8.19694.1|Name=mRNA_S-ischiensis_contig8.19694.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2323bp|location=Sequence derived from alignment at S-ischiensis_contig8:3218287..3220609+ (Schizocladia ischiensis KU_0333)
AGTAGCAGTGGCGTCCGGGGACGGGGTGACAGCAACAGCCAGCGGCCGCA
GCTGACCCTCCTACTGAGGGTGCTGAGGGACGGGGTGCGCAGGTACTAGA
CTTGTGTGCTGTCCTTCCGGAGGTTGTACACTTCCAAGACCTGTGTAAGT
AAGTTAGTACAGTAATACCTAACAGTACTATGTAGTACAGTAGCGACAAC
GTGTATTGCATGTACTTCCAAGCACATTCACGGTACCGTAAGTACGGCAG
CCGACAAAAACATCTGGCAGGCAGGGGAGCTTTGGTTGACAAGAGCTCTT
GGCGCAGAGCACGACGACTACGGTGCTGTAGGACGATACTGCGTGTGTGT
TTGTCGGAGATATGCAGCCAGTGATGGAATGTCTAAGCAAATCAACCTAT
TCATCGACGGCACTGATTTACTACTATATATCTATCGACCGTCGAATATC
ATTGCCTCAGTTGTACTGCGATACATCCTTGCGTGCTCAGCCAACAGCCC
CATGTAAAAAACTTCGGTTCTTGCCCTCCGATAGGAGCACAAGTATTTAG
CCATGGACTCTCAACTGCACTGCCGGTACTATGCATGCACGTGTAGATGT
AGTCAAGCCATTCGAGGACTGCTAACTACTTCGAAGTACTTCGTAGGTAC
ACAATATATTGAAGTGAAAACTTCGGGGTTTGCCCTGCGACAGGAGTACA
AGCAGCTACTCGTATTAGCTGTTGACTACTCTCGCATCCCACAACCAGGC
TGCGACAGTGCATGCCGGGTTCGCACCTCCTTGGCCAGGCCGAGCACAGA
CTCGACTATACTATGGATACATTTGACCCGTTTGAGGACTGCTAACTACA
CTCTATAGTTAGTCGAAACATCGGGTTTGCACCGCCTTGGCCAGGCCGCG
CACTGAAACTGCACTCAGTTCTTAAATGGGATAGCCACTAATATGAGAAC
ACTCAATCTCGCACACCTTGCGATTGTACCTCGTTGCAATTTATATGAAT
CACCACTGAGTCTGCACCCCGTTAGCTTAGCCTTCATTCGAATCGCTGCC
CGTCCCCGTGCAAATCGCACCACAGGCCACTGGAACGCGTGCCGTGCGTG
GTGGCGCTGGCGCTGGCCCGGGCGGCGGAGGTGGTGGCCTGCGACCCCGG
CAGCGAGGTGTATCGGACGGTGAACTCGTGAGTGGATTTACGTTAGAACA
CTGAGATCAGTACGATTATTTGTTAGGAGACTGGGTTTTTCCAACTACCC
CAAGTACTGTCACGGTAGTCACAGTACTGTAGCAGACTGAGTTTCACTAC
AAGTATTATAAGTAACAACACGGGGCGAGGTGCAGGCCACGTCACTAGAG
GCCTCAACATTGGCCCTTCCTTAGCTCGCCAGGGGAAAGTTTGGTGGGGA
AGAGGAGGTGGAGGGGGTGGGGGGGGGAAAGAGGAAAGGAGGGAGAGGGG
TGTAAGTAGCTACTGCAGGAGTTTCAAGCACCCTACAATAGGTACCCATA
CTGTAGTTAAGAGAATGGGTTTTCACGGGGCCCAAGTGTGTTGTTAGAAG
GCTGAGTTTCGCTGCAAGTATAGGAGACTGTGAGTTTCACCATACCCGAG
TGCGTGGGTAGAAACTGAGGTACTCGAGTACACTTGTAGTAGCTAGGAGA
ATGAGTTTGACCATGCCCATGTTTGTACTCAGAAACTGATTTTCACTATA
AGTACTCCTACTGGTACTTAGTGTACTGAGTTTCACCATACCCAAATGTG
TAATCAGGAGACTGAGCTTCACTAAAGTAGCTAGAGGACTGAGTTTCACA
ACACCCAAGTAGTTGGAGGACTGAGTTTCACAACACCCAAGTAGTTAGAG
GACTGAGTTTCACAACGCCCAAGTAGCTAGAGGACTGAGTTTCACAACGC
CCCAAGTAGTTTGAGGACTGAGTTTCACAACACCCAAGTAGATTTTGGCA
CGCAGCACTCCACAGCTTTCTGACTGCACGCACTACACAAGGCCTCGCGT
GCCGGGGACAGCCTGCCCCGCGAGCGGACTGGGGCATTTACTCTCGCGAC
GGCATTCTGTACAATCCCCCACCTGCCCGCCCGGGGCCCCGCCCCGCTCA
CGTCCCCTCGCCTCCCCTCCCCTCCCCTCCCCTCCCTGCCCTCCCTCCCA
CCACCTTACCACCCGCCCGCCCACCTCCCCCTTGCGACCGCCGCGCCGCC
TTCTGCTCGACCCCCGTGCACGCCCCACTGCGTACACTCCGCAGCTTCCT
GCTGCACAGGCCTTTCGTGCATCTGCATGACGTGCCGCTTTTCACGCCGC
TCTTCACGGGCGTTACCGGAGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3218287..3220609+

>mRNA_S-ischiensis_contig8.19694.1 ID=mRNA_S-ischiensis_contig8.19694.1|Name=mRNA_S-ischiensis_contig8.19694.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig8:3218287..3220609+ (Schizocladia ischiensis KU_0333)
AGTAGCAGTGGCGTCCGGGGACGGGGTGACAGCAACAGCCAGCGGCCGCA
GCTGACCCTCCTACTGAGGGTGCTGAGGGACGGGGTGCGCAGAGTAGCAG
TGGCGTCCGGGGACGGGGTGACAGCAACAGCCAGCGGCCGCAGCTGACCC
TCCTACTGAGGGTGCTGAGGGACGGGGTGCGCAGGCCACTGGAACGCGTG
CCGTGCGTGGTGGCGCTGGCGCTGGCCCGGGCGGCGGAGGTGGTGGCCTG
CGACCCCGGCAGCGAGGTGTATCGGACGGTGAACTCGCCACTGGAACGCG
TGCCGTGCGTGGTGGCGCTGGCGCTGGCCCGGGCGGCGGAGGTGGTGGCC
TGCGACCCCGGCAGCGAGGTGTATCGGACGGTGAACTCCTTCCTGCTGCA
CAGGCCTTTCGTGCATCTGCATGACGTGCCGCTTTTCACGCCGCTCTTCA
CGGGCGTTACCGGAGGTCTTCCTGCTGCACAGGCCTTTCGTGCATCTGCA
TGACGTGCCGCTTTTCACGCCGCTCTTCACGGGCGTTACCGGAGGT
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