mRNA_S-ischiensis_contig8.19687.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19687.1
Unique NamemRNA_S-ischiensis_contig8.19687.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19687.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.590e-8
Identity = 41/97 (42.27%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 VRQRLPEVQTLLGLRDRLGSDAELSPTVAVAAAAEVAATTPDDYTAAASAATGRGALLPPSRALFMRCRLLSLLRRYAEVLPEAVAGANFDLLKLLP 291
            +RQR+P++QTLLGLRD++G  A                         AS A G   +    RA+ +R R+LSLL RYA V+P +VA A FD LKLLP
Sbjct:  660 LRQRMPDLQTLLGLRDKIGVGA-----------------------GDASKAPGGQHV---DRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP 730
[Close]
BLAST of mRNA_S-ischiensis_contig8.19687.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.670e-7
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 VRQRLPEVQTLLGLRDRLGSDAELSPTVAVAAAAEVAATTPDDYTAAASAATGRGALLPPSRALFMRCRLLSLLRRYAEVLPEAVAGANFDLLKLLP 291
            +RQR+P++QTLLGLRD++G  A                          S  TG   +    RA+ +R R+LSLL RYA ++P +VA A FD LKLLP
Sbjct:  643 LRQRMPDLQTLLGLRDKIGVGA-----------------------GDGSKVTGGQHV---DRAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLP 713
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A9_ECTSI5.590e-842.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE2.670e-740.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3205543..3205863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue7.4e-07
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817297.8214436-CDS-S-ischiensis_contig8:3205542..32058631622817297.8214436-CDS-S-ischiensis_contig8:3205542..3205863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3205543..3205863 +
1695741006.04038-CDS-S-ischiensis_contig8:3205542..32058631695741006.04038-CDS-S-ischiensis_contig8:3205542..3205863Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3205543..3205863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19687.1prot_S-ischiensis_contig8.19687.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3205543..3205863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19687.1

>prot_S-ischiensis_contig8.19687.1 ID=prot_S-ischiensis_contig8.19687.1|Name=mRNA_S-ischiensis_contig8.19687.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=107bp
VRQRLPEVQTLLGLRDRLGSDAELSPTVAVAAAAEVAATTPDDYTAAASA
ATGRGALLPPSRALFMRCRLLSLLRRYAEVLPEAVAGANFDLLKLLPAGG
GGGGGSG
back to top

mRNA from alignment at S-ischiensis_contig8:3205543..3205863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19687.1 ID=mRNA_S-ischiensis_contig8.19687.1|Name=mRNA_S-ischiensis_contig8.19687.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=321bp|location=Sequence derived from alignment at S-ischiensis_contig8:3205543..3205863+ (Schizocladia ischiensis KU_0333)
GTCCGCCAACGCCTGCCCGAAGTGCAAACCCTCCTGGGGCTCCGTGACCG
GCTGGGTTCGGACGCCGAGCTGTCGCCCACGGTGGCGGTGGCAGCGGCGG
CAGAGGTGGCAGCGACGACCCCTGATGACTATACCGCTGCTGCCAGCGCT
GCCACTGGAAGAGGGGCCCTTCTTCCCCCATCACGGGCACTCTTCATGCG
ATGCCGGCTGCTCTCCCTCCTGCGGCGGTACGCCGAGGTCCTCCCCGAGG
CCGTGGCGGGCGCGAACTTCGACCTGCTCAAACTGCTGCCTGCCGGCGGC
GGTGGCGGCGGCGGCAGCGGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:3205543..3205863+

>mRNA_S-ischiensis_contig8.19687.1 ID=mRNA_S-ischiensis_contig8.19687.1|Name=mRNA_S-ischiensis_contig8.19687.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=642bp|location=Sequence derived from alignment at S-ischiensis_contig8:3205543..3205863+ (Schizocladia ischiensis KU_0333)
GTCCGCCAACGCCTGCCCGAAGTGCAAACCCTCCTGGGGCTCCGTGACCG
GCTGGGTTCGGACGCCGAGCTGTCGCCCACGGTGGCGGTGGCAGCGGCGG
CAGAGGTGGCAGCGACGACCCCTGATGACTATACCGCTGCTGCCAGCGCT
GCCACTGGAAGAGGGGCCCTTCTTCCCCCATCACGGGCACTCTTCATGCG
ATGCCGGCTGCTCTCCCTCCTGCGGCGGTACGCCGAGGTCCTCCCCGAGG
CCGTGGCGGGCGCGAACTTCGACCTGCTCAAACTGCTGCCTGCCGGCGGC
GGTGGCGGCGGCGGCAGCGGGGTCCGCCAACGCCTGCCCGAAGTGCAAAC
CCTCCTGGGGCTCCGTGACCGGCTGGGTTCGGACGCCGAGCTGTCGCCCA
CGGTGGCGGTGGCAGCGGCGGCAGAGGTGGCAGCGACGACCCCTGATGAC
TATACCGCTGCTGCCAGCGCTGCCACTGGAAGAGGGGCCCTTCTTCCCCC
ATCACGGGCACTCTTCATGCGATGCCGGCTGCTCTCCCTCCTGCGGCGGT
ACGCCGAGGTCCTCCCCGAGGCCGTGGCGGGCGCGAACTTCGACCTGCTC
AAACTGCTGCCTGCCGGCGGCGGTGGCGGCGGCGGCAGCGGG
back to top