mRNA_S-ischiensis_contig8.19678.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19678.1
Unique NamemRNA_S-ischiensis_contig8.19678.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: A0A836CAV3_9STRA (Leo1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 7.270e-61
Identity = 119/262 (45.42%), Postives = 165/262 (62.98%), Query Frame = 1 
Query:   58 EPEE----LHLPVLPRPPKGADVFIARLPNILGVKTEPFDPDTFRQQEEADEFKFTTNIIR----------WRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTERNSMLYVHVQQAGQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEARKMRT---YNKHGMGS-GRPPGMDISYLEDGA-YDSTSVRGIKAGARAGRYD 786
            +PEE    + +P L RP   + V++ R+PN++G+KT PFDP+TF Q  E + FKFTTNIIR          WR++KDA G LE D+ G+P+RETNTRLVKWSDG+ QL+VG+EVFDV+ +  +++   Y+ V+Q      SCLECQG L  K+ FKPS L S AHR+L L  R    K  ++ +++ET DPE VK +R R EE  +K E R+      Y ++  G+ G+   M  +YLE+G  YD T ++ +K   R  RYD
Sbjct:   81 QPEEQAIAIEIPELQRPTPASKVYVTRMPNVMGIKTAPFDPNTFDQVAEDETFKFTTNIIRQAYFNSLTLEWRHRKDASGALEYDEHGEPIRETNTRLVKWSDGSLQLMVGEEVFDVSEHALDKS---YMFVRQKTTEGTSCLECQGRLDNKLTFKPSGLHSKAHRSLALAVRTRTQKASRIMSYSETMDPEAVKTQRVRTEEGTRKREKRRTSGAAGYPRYRDGARGKRARMSATYLEEGVDYDETGLKSLKEDTR-NRYD 338
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: B7FUI2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUI2_PHATC)

HSP 1 Score: 148 bits (373), Expect = 6.460e-38
Identity = 85/248 (34.27%), Postives = 144/248 (58.06%), Query Frame = 1 
Query:   67 ELHLPVLPRPPKGADVFIARLPNILGVKTEPFDPDTFRQQEEADEF-KFTTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTERNSM-----LYVHVQQA--------GQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEARKMRTYNKHGMGSGRPPGMDISYLE---DGAYDSTSVRGIK 759
            +L+L   P+  +   + + +LPN++G++T+ FDPDT+    E D+F +   N++RWRY+KD  GN  RD++ + +RE+N+RLV+W DG+Y L +G+E F+++  +T  N            Q+A         + + + LEC G +  +M  +PSSL+S AH++LT+  RQ   K  ++  +   +DPE  K  R + +++ +K  ARK   Y++ G  + RP  M  SYLE   DG YD+ +++  K
Sbjct:  120 QLYLQQEPKISENIALHMTKLPNLVGIQTQAFDPDTYHPAMEEDDFGQSVYNLVRWRYRKDDTGNYVRDEQDRLLRESNSRLVQWEDGSYTLHIGNEAFEIDALKTAANGFPGLNGFIYRTQKAVLKTADDNERAAGTVLECVGAVATRMTIRPSSLQSEAHKSLTVGIRQKTMKKARIAEYVTQEDPEKAKQDRIKVKQDLEKVSARKRSGYSQAGGRTARPR-MSRSYLEEEEDGDYDTFNIKDTK 366
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: A0A448YW85_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW85_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.140e-35
Identity = 93/270 (34.44%), Postives = 143/270 (52.96%), Query Frame = 1 
Query:   55 GEPEELHLPVLPRPPKGADVFIARLPNILGVKTEPFDPDTFRQQEEADEFK-FTTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDV-NVNQTERNSML----YVHVQQAG-----------------QGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEARKMRTYNKHGMGSGRPPGMDISYLE---DGAYDSTSVRGIKAGARAGRYD 786
            G  +   +P   +P +G  + + +LPN++ ++   FD   + ++EE + +K +  N+IRWRYKKD  GN  RD+ G  +RE+NT+LVKWSDG++ L +G E FD+ NV+ +  +       YV+  Q                   Q   + LEC G +  + V KPSSL+S +H++LT+  RQ   K  K+  +   +DPE +K  R +  E+    + RK  T      G GR PGM+  YLE   D  YD+ ++R +K  A A  YD
Sbjct:  136 GRTQNATVPSAGKPQEGCSLHMTKLPNVVAIQPSAFDEVDYDEKEEEETYKGYVHNMIRWRYKKDDNGNPMRDERGL-IRESNTKLVKWSDGSFTLHIGKEAFDIQNVDSSTGSGFSGLNGYVYQSQKATFQTDENDSDNDDEDDLQNGGTVLECIGPVGSRFVAKPSSLQSESHKSLTVAVRQRTVKRAKIAQYMTEEDPEKLKQERIKYNEDAXXXKQRKRATGG-GSRGGGRRPGMNKGYLEADDDEGYDTVNLRAMKK-ASASNYD 402
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: A0A7S2XRE6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRE6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.150e-34
Identity = 104/305 (34.10%), Postives = 152/305 (49.84%), Query Frame = 1 
Query:   58 EPEELHLPVLPRPPKG----ADVFIARLPNILGVKTEPFDPDTFRQQEEADEFKFTT-NIIRWRYKKDAM-GNLERD-QEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTER-------NSMLYV----HVQQAGQG-------SASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEARKMRTYNKHGMGSG-----------RPPGMDISYLE---DGAYDSTSVRGIKAGARAGRYDSLSDDXXXXXXXXERGLEALKRS 855
            EP  L +  +PRP         + + +LPN++G+  EPFDPDTF    E  E++    N+IRWRYK+    G + RD Q  K  RE+N+R V+WSDG+  L VG+EVF+V+ + +         N  LY+    H    G+G       + + LEC G +  KM+ +PSSLKS AH+NLTL  RQ   K  +++      DPE  KL R + +++  K EAR +      G  SG           R PGM+  YLE   D  YD+  +R +K  ++   Y    +D        +   E  K++
Sbjct:  152 EPRRLEVLDMPRPEATRAHKTTLHMTKLPNLVGINPEPFDPDTFDADLEETEYRGNVHNMIRWRYKRSQDDGTMLRDPQTNKLQRESNSRFVRWSDGSVTLHVGNEVFEVDEHDSSTKNGFAGINGYLYLSQKAHTMGGGEGDNHDKTPAGTVLECMGPISSKMIPRPSSLKSEAHKNLTLAVRQRNMKKARIEEHVTQVDPEKEKLERIKNKDDLLKQEARGVSGRRGAGRRSGEYNNGNSNSNNRRPGMNRRYLESNEDENYDNIDIRQLKRRSQEDEYLDYGEDSGEDADSGDEAWENRKKA 456
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: A0A7S0N493_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N493_9CHLO)

HSP 1 Score: 127 bits (320), Expect = 2.020e-30
Identity = 81/234 (34.62%), Postives = 123/234 (52.56%), Query Frame = 1 
Query:   55 GEPEELHLPVLPRPPKGADVFIARLPNILGVKTEPFDPDTFRQQEEA-------DEFKFTTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTERN-SMLYVHVQQAGQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEA---RKMRTYNKHGMGSGRPPGMDISYLED 723
            G P +L  P+L  P   + + + RL NIL V+T+PFDP  F +++ +          K   N++RWR+            +G+P++E+N R V+WSDG+ QLL+GDEV DV    T ++ + LYV            ++C G L  K++F+PSSL S +H++LT    +   K+ K++      DPE  K+ R R EEER K      RK  T  + G  +    G + SYLE+
Sbjct:  112 GAPLDLEAPLLRLPGDPSKMKLFRLSNILHVETKPFDPQHFEEEDTSYVDASGERRTKLFQNVVRWRH--------SYTPQGEPIKESNARFVRWSDGSVQLLLGDEVLDVTEQDTSKDKAKLYVR-------HPGLIQCLGNLESKLIFRPSSLNSKSHKHLTAIVDKKHAKVNKLRKMLTMVDPEVEKVERERMEEERNKNRMDLQRKQETVMERGGYNSAQRGFNSSYLEE 330
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: D7FUQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.200e-27
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   64 EELHLPVLPRPPKGADVFIARLPNILGVKTEPFDPDTFRQQEEADEFKFTTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVK 315
            E+  +PVLPRPP  ADV I+RLPNILGVKTE FDPDT+ ++ EADEFKFTTNIIRWR+K+  +G  E   +G+ +RE+NTRLVK
Sbjct:   55 EDEEIPVLPRPPAEADVMISRLPNILGVKTEAFDPDTYEEEAEADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVK 138
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: E1Z4X2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4X2_CHLVA)

HSP 1 Score: 117 bits (294), Expect = 1.210e-26
Identity = 84/218 (38.53%), Postives = 119/218 (54.59%), Query Frame = 1 
Query:  118 IARLPNILGVKTEPFDPDTFRQ--QEEADEFKFTT------NIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTERNSMLYVHVQQAGQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEER----QKGEARKMRTYNKHGMGS----GRPPGMDISYLED 723
            + +LPNILGV+  PFDPDTF    +EE DE  F        N IRWR+          D+EG  VRE+N R V+WSDG+ QL+VGDEV DV    T  N   Y+ V+  G      ++ QG+L +KMVF+P+SL+SN H+ L   A +   K  +++      DP+ +K  + RAE ER    +K   R+ +T  K G+ +      P  ++  YLE+
Sbjct:  105 LVKLPNILGVEARPFDPDTFDAGAEEEVDERGFKRVRLRDQNCIRWRWGV--------DEEGNQVRESNARFVRWSDGSLQLVVGDEVMDVKEIDTT-NEHTYMCVRLPG-----LIQGQGQLTRKMVFQPASLQSNLHKQLRAAADKLHVKTQRVRATTTLVDPKKLKAEQERAEAERIRSREKLAERQTKTMRKFGLPAMPRARMPQQLNADYLEE 308
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: B8C076_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C076_THAPS)

HSP 1 Score: 119 bits (297), Expect = 1.420e-26
Identity = 93/287 (32.40%), Postives = 134/287 (46.69%), Query Frame = 1 
Query:  112 VFIARLPNILGVKTEPFDPDTFRQQEEADEFK-FTTNIIRWRYKKDAMGNLE--RDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVN-----VNQTER----------------NSMLYV---------------HVQQAG--------------------QGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVKLRRARAEEERQKGEARKMRTYNKHGMGSGRPPGMDISYLED-GAYDSTSVRGIKAGA-RAGRYDS 789
            + I +LPN++G+ T  ++P+T   ++E + ++ +  N+IRWRYK       E  RD+ G P+RE+NTRLVKWSDG+Y L VG EV +V+     V   E+                N  LYV               +  + G                    Q + + LEC G +  +   +PSSL S AHRNLTL  RQ   K  ++       DPE  KL R + +++  K +AR      + G GS R  GM+  YLED   YD  ++  +K    R   YDS
Sbjct:  212 IHITKLPNLVGINTAAYNPETHNLEDEEEYYRGYVHNMIRWRYKNKPEDETELVRDENGHPIRESNTRLVKWSDGSYTLHVGQEVLEVDNLDSSVPLDEKAEGAGGGNALAGFAGINGYLYVSQKARIRPPSKRELENANKEGVEGKEKDDIMDDSSDEDAPAQPAGTVLECLGPIVSRFAPRPSSLASEAHRNLTLAVRQRNVKRARIAEIVTDFDPEKEKLARIKGKDDLAKSQARSNSGGRRSG-GSSRKRGMNAGYLEDEDDYDGVNLGKLKRSTMRGNNYDS 497
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: A0A1Y3NH27_PIRSE (Uncharacterized protein n=2 Tax=Piromyces TaxID=4821 RepID=A0A1Y3NH27_PIRSE)

HSP 1 Score: 117 bits (292), Expect = 3.920e-26
Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 1 
Query:  100 KGADVFIARLPNILGVKTEPFDPDTFRQQEEADEFKFTTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTERNSMLYVHVQQAGQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTF 570
            K +++++A+LPN L ++ EPFDP T++  EE +E +   N+IRWRYKKD   N   DQ     +E+N R +KWSDG+  LL+GDE+F+VN+N+ + +  + VH  + G      L+ Q +L   M F+P  +KS  H+ LT +  +   +  K K F
Sbjct:  171 KNSNIYLAKLPNFLDIEPEPFDPITYKGVEE-EEARLRENVIRWRYKKDKNNNYLPDQ-----KESNARFIKWSDGSLSLLLGDEMFEVNLNEIDSHQYIIVHHSREG-----ILQTQAQLMNSMSFQPYGIKSLTHKKLTASIAEKHQRAVKTKMF 316
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BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Match: UPI001F03349A (RNA polymerase-associated protein LEO1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03349A)

HSP 1 Score: 115 bits (288), Expect = 1.420e-25
Identity = 91/288 (31.60%), Postives = 132/288 (45.83%), Query Frame = 1 
Query:   34 SDGEEEVGEPEELHLPVLPRPPK---GADVFIARLPNILGVKTEPFDPDTFRQQEEADEFKF----------TTNIIRWRYKKDAMGNLERDQEGKPVRETNTRLVKWSDGTYQLLVGDEVFDVNVNQTE-RNSMLYVHVQQAGQGSASCLECQGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAET-QDPETVKLRRARAEEERQKGEARKMRTYNKHGMGSGRPPGMDISYLEDGAYDSTSVRGIKAGARAGRYDSLSDDXXXXXXXXERGLEALKR 852
            SD E+   EPEE H+ +     K   G+++   +LPN L V+T+PFD  T+  + E DE               N IRWRY K        D+EG  ++E+N R+V+WSDGT  LL+G EVFD++  + +  ++ L+V   Q G G    L+ Q   R K+ F+P S  S  HR +TL+      K GK+K      +DPE+ K    + EEE+ + + RK     +                          R I  G  A   +  +DD        E+ L ALKR
Sbjct:  167 SDDEDATDEPEETHINIEIPYSKFSLGSEMSFVKLPNFLSVETKPFDATTYEDEFEEDEVMDDEGRSRLKLRVENTIRWRYAK--------DEEGNDIKESNARIVRWSDGTMSLLLGAEVFDIHKTKIDGEHNHLFV---QQGTG----LQAQAIFRDKLTFRPHSTNSQTHRKMTLSIADRVSKTGKIKILPVVGKDPESQKSELIKKEEEKLRSQLRKENQQRR-----------------------IRERSIARGLSASYLEGRNDDDDDTLESSEQSLLALKR 416
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAV3_9STRA7.270e-6145.42Leo1-like protein-domain-containing protein n=1 Ta... [more]
B7FUI2_PHATC6.460e-3834.27Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A448YW85_9STRA4.140e-3534.44Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2XRE6_9STRA2.150e-3434.10Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0N493_9CHLO2.020e-3034.62Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
D7FUQ9_ECTSI1.200e-2765.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
E1Z4X2_CHLVA1.210e-2638.53Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
B8C076_THAPS1.420e-2632.40Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Y3NH27_PIRSE3.920e-2638.85Uncharacterized protein n=2 Tax=Piromyces TaxID=48... [more]
UPI001F03349A1.420e-2531.60RNA polymerase-associated protein LEO1-like n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3172934..3177777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue8.5e-34
Seed eggNOG ortholog2850.Phatr44561
Preferred nameLEO1
KEGG koko:K15177
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001501,GO:0001650,GO:0001672,GO:0001704,GO:0001706,GO:0001711,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007369,GO:0007399,GO:0007417,GO:0007492,GO:0007507,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010001,GO:0010048,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010847,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0021510,GO:0021515,GO:0021529,GO:0021782,GO:0022008,GO:0022607,GO:0030154,GO:0030318,GO:0030880,GO:0031056,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031399,GO:0031440,GO:0031442,GO:0031445,GO:0031452,GO:0031454,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033523,GO:0033696,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035206,GO:0035987,GO:0036211,GO:0042063,GO:0042127,GO:0043009,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043473,GO:0043631,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045798,GO:0045893,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0048066,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048709,GO:0048731,GO:0048762,GO:0048831,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0050931,GO:0050936,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0055029,GO:0060255,GO:0060485,GO:0060795,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902680,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1904837,GO:1904888,GO:1905268,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001251
EggNOG free text desc.RNA polymerase II C-terminal domain phosphoserine binding
EggNOG OGs2XDHC@2836,KOG2428@1,KOG2428@2759
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Exons6
Model size861
Cds size858
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19678.1prot_S-ischiensis_contig8.19678.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3172935..3177777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817297.4642608-CDS-S-ischiensis_contig8:3172934..31730041622817297.4642608-CDS-S-ischiensis_contig8:3172934..3173004Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3172935..3173004 -
1695741005.7921107-CDS-S-ischiensis_contig8:3172934..31730041695741005.7921107-CDS-S-ischiensis_contig8:3172934..3173004Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3172935..3173004 -
1622817297.478339-CDS-S-ischiensis_contig8:3174321..31744451622817297.478339-CDS-S-ischiensis_contig8:3174321..3174445Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3174322..3174445 -
1695741005.8057168-CDS-S-ischiensis_contig8:3174321..31744451695741005.8057168-CDS-S-ischiensis_contig8:3174321..3174445Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3174322..3174445 -
1622817297.489962-CDS-S-ischiensis_contig8:3175184..31753111622817297.489962-CDS-S-ischiensis_contig8:3175184..3175311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3175185..3175311 -
1695741005.8156047-CDS-S-ischiensis_contig8:3175184..31753111695741005.8156047-CDS-S-ischiensis_contig8:3175184..3175311Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3175185..3175311 -
1622817297.5010793-CDS-S-ischiensis_contig8:3176134..31762851622817297.5010793-CDS-S-ischiensis_contig8:3176134..3176285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3176135..3176285 -
1695741005.8267028-CDS-S-ischiensis_contig8:3176134..31762851695741005.8267028-CDS-S-ischiensis_contig8:3176134..3176285Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3176135..3176285 -
1622817297.511692-CDS-S-ischiensis_contig8:3176866..31770631622817297.511692-CDS-S-ischiensis_contig8:3176866..3177063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3176867..3177063 -
1695741005.836076-CDS-S-ischiensis_contig8:3176866..31770631695741005.836076-CDS-S-ischiensis_contig8:3176866..3177063Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3176867..3177063 -
1622817297.5223184-CDS-S-ischiensis_contig8:3177588..31777771622817297.5223184-CDS-S-ischiensis_contig8:3177588..3177777Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3177589..3177777 -
1695741005.8467548-CDS-S-ischiensis_contig8:3177588..31777771695741005.8467548-CDS-S-ischiensis_contig8:3177588..3177777Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3177589..3177777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19678.1

>prot_S-ischiensis_contig8.19678.1 ID=prot_S-ischiensis_contig8.19678.1|Name=mRNA_S-ischiensis_contig8.19678.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=286bp
GAGVGGDKGGDSDGEEEVGEPEELHLPVLPRPPKGADVFIARLPNILGVK
TEPFDPDTFRQQEEADEFKFTTNIIRWRYKKDAMGNLERDQEGKPVRETN
TRLVKWSDGTYQLLVGDEVFDVNVNQTERNSMLYVHVQQAGQGSASCLEC
QGELRKKMVFKPSSLKSNAHRNLTLTARQAAHKMGKMKTFAETQDPETVK
LRRARAEEERQKGEARKMRTYNKHGMGSGRPPGMDISYLEDGAYDSTSVR
GIKAGARAGRYDSLSDDDDESDEEEERGLEALKRSR
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mRNA from alignment at S-ischiensis_contig8:3172934..3177777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19678.1 ID=mRNA_S-ischiensis_contig8.19678.1|Name=mRNA_S-ischiensis_contig8.19678.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4844bp|location=Sequence derived from alignment at S-ischiensis_contig8:3172934..3177777- (Schizocladia ischiensis KU_0333)
GGCGCCGGGGTGGGGGGCGACAAGGGCGGGGACAGCGACGGGGAGGAGGA
GGTGGGCGAACCGGAGGAGCTTCACCTACCGGTGCTGCCGCGCCCCCCTA
AGGGGGCGGATGTGTTCATAGCAAGGCTGCCCAACATCCTGGGGGTGAAG
ACGGAGCCCTTTGACCCGGACACCTTCCGGCAGCAGGAGGTGATTTTGCT
ATTCGTTTGTTAGTATTATACTTGTATTATTATTTTTGTGTATGAAGAAA
AGAAGCGAGTGGAAAGTAGAGGTGATCCTACTTTTGTGAGTTCCGGGCCC
CAAGAGATGGAAGCCCGTGATTCCCCCGCCTTCACTCGCAGGGCAAAAAA
TCAAAGGGAAACGGCCAGTGGGGGGGAAATGTAAAGAAACCAGAAAAAGG
AAAGGGGCAAAGGGGACAAAAACTCCCGAGTCTCTTGTGCCACGAAGCGG
GACGCGCGAAGCCGGCGATTTTATTTTTATTTTTACTTCAAGTGTTTTTC
TTCGTGGGTTTTTCTCTTCATTTTTCGCTTTGACTTTGCTATGCGCTCGC
CCCTCTAAATGGGACGTGTCACATCCTCTCCCTTCCACTGATGCGACGTA
ACGCGATGTGATGTGATTTGATGTAATGCGATGCGATGTGATTTGTGATC
TTACACGCCGTAGTGACTGGTTTGGCATCGCATCACGTCATCCCCCCCCC
CCTCCCCGTCGCAGGAGGCGGACGAGTTCAAGTTCACGACCAACATAATC
CGCTGGCGCTATAAGAAGGACGCTATGGGCAACCTGGAGAGGGACCAGGA
GGGCAAGCCCGTGAGGGAGACCAACACCCGCCTGGTGAAGTGGAGCGACG
GCACCTACCAGCTGCTGGTGGGGGACGAGGTGTTTGACGTAAACGTCAAC
CAGACCGAGAGGTTTGTGTGTTTGTGTACAGGTATATGTACTCGAGTACT
CACGTTGTCCTTGCCGTAGTGTCGGGCCGAGGCCATTGACCACGCGCCTC
GATCGAGCCGGAGCAGCGTGTGTGTGTACGAGGTGTTTGACGTCAATGTC
AACCAGACTGAGGGGTGTGCGTGTGTGTCCGCGTGTGTGTGTATGTGCTC
GAGTAGCCACGTTGTGCTTGCCGTACCTAGTCCCGAGGCCATTGACCACG
CGCCTCAATCGAGACGGAGCAGCGTGTGTGTGTGTGTGTATACGTTTGTT
TTGGCGGGTGTGTGTGCGTGCGCGCACATTTGTGCCCGTGTCTGCCTGAG
AGTACCTATGCGGGCGCACAAGTGTCCTGTCCGCCTCTCTCTCTCAACTC
CCTCCCTCCACGCGCGCACGTGTGTTTGTGTCTGCATGTCTTTTATCTCG
CTCTCTCTCTACCCCCGCCCCCCTCCGTGCACATGTGCTTCCGGCGCTGT
GTCTCGCTGTATCTCGCGACTACGGAGGCGTAAACGAACACGCTGATCCC
CGCGACATCCGACCCCCCCGTCATCGCCTCCCTACGCCGCAGGAACTCCA
TGCTGTATGTGCACGTGCAGCAGGCGGGGCAGGGCAGCGCCAGCTGCCTG
GAGTGCCAGGGGGAGCTGCGCAAGAAGATGGTCTTCAAGCCCAGCAGCCT
GAAGAGCAACGCGCACCGCAACCTTACCCTCACGGCCCGTCAGGTGCGGT
ACAGCACACGAATGTGATGTGATGTGATGTGATGTCAAACTACAGTACAG
AAGACTGCACATCACATCACATCACATCTCCATCACATCACGTCACGTCA
ACACTGCCGCGAATGGGAGCACGCATCGTATCGCATCGCATCACATCACA
TCACATCTCCATCACATCGCGTCACGTATCACCGAAACCTTCAATACGTT
AGCCTCACGGGCCGTCAGGCGCGGTACACGAATGTGATGTGATGTGATGT
GAATGTCATGTCAACATTGTGTACAGCGAATTGGAGCACGCATCGCATCA
CATCACCGTCGCATCACGTCATGTAGGTATCACCGAAACCTTGGCCTCAC
GGGCCGTCAGGTGCGGTTACACTAATGCTGTGTGATGTCAACACTACAGC
GAATGCACACATCGCATCACAACACATCACATTACGCCCCTGCCTCCCCC
CCCTCGCCCCCTTGCCGGGCCGGGCAGCCCGCAATACAGGCAAACGAAAC
ACTGACCAACAAATTCGACCGACCCAGTCATTCCGACCGAATCATCGCTT
CGCTTCGACGGATGAAACCATTCGTTCGGCCGACAATTTTCGGCCGGTCG
AGTGCGTCAGTTTACAGCTCGTTTACCCCGCGGCGCCCCCTTTTCCCTTT
TTGTTTTTAATTCTTTCATGTGATGACCGCTAGTGCGAGAACACTCAATT
CTTAAAGGGGATAACCACTAATATGAGAACACTCTATATCACACACGTGC
GATTGTACCTCGTTGCGATTGATATGAATCACCACCCCCTTTTGCCGCCG
GGCCCTGCCCCACCAGGCGGCTCACAAGATGGGCAAGATGAAGACGTTCG
CCGAGACACAGGACCCGGAGACGGTCAAGCTGCGGAGGGCAAGGGCGGAG
GAGGAGCGCCAGAAGGGGGAGGCCCGCAAGATGCGGACGTACAGTGAGTT
GTAACGTACGTGCGTGCTTGTGTCTGTGTGTGTGTGCGCGCGCGCGCAAA
TTGCGGACGTACAGTGAGTTGTGCGTGCGTGCGTGCATGCGTGCGTGCGC
GTTCGTTTGTGAGCCCCGCAAGATGCGGACGTACAGTGAGTTGTGCGTGC
ATGCACGCGTGCATGTGTGCGTGTTTGTGAGGCCTGCAAGATGCGGACGT
ATAGTGAGTTGTGCGCGTGCGTGCGTGCGTGCGAGTGTGTGTGTGTGTGT
GTGTGCATGTGTGTGTGTGTGCGTGTGTCTGTGTCTGTGTGTATGTCTTG
TGGACTGTGAGTGTTGACTGCAAGCACGGTTTGTGTGTGTGTGTGTGTGT
GTCTTGTGGAGTGTGAGTGTCGCCTGCAAGCACCGCTGCTCTGGTACGTA
CCGCTGGCAGTCCTGCGCGTGTGCGACGTCAGGCGTTCTCAATTCTTTAA
TGTGATAGCCACTACCCTAAAGCGAGAATAAGAATTCTTAAATGGGATAA
CCACTATTTGTAGCACGAGAACACTCAATCTCACACGCGTGCGAATATAC
CTCATTACAACTTTTTCGAATTATTGCGATGACATGCGAGTTCCGGGCCC
CGTCCCAGCAACCGAAGGTGGGGACCTCACCAGAAGCCCTTCCTGGCTCG
CAGGGCACAAAAGTCAGAAAAGCAGCAACAAAGTTATACGATTCAACGCC
CCGTCTCGCTCCTCCCTCCCCCTGTTTGGCAGACAAGCATGGGATGGGGT
CTGGTCGCCCCCCGGGTATGGACATCTCCTACCTGGAGGACGGTGCGTAC
GACAGCACCTCTGTCAGGGGGATCAAGGCTGGTGCGCGCGCCGGGCGTTA
CGACAGGTGAGCCATCTGCTGTACTGGAGTACTTCGAAGTACTACAGTAC
GAGTACTCGGCGGAGAGGTTCAAAGCGGTTGGCCGCCCCCAGACTGTTTT
TGTATTCCTTGGTTGATTGATCGATTGTTAGTATATTTATTTAGTTTTCT
GGGAAAGAAGAGGTGTGTCGCTAATTACGCGAGTTCAGGTCCCCACCCCT
GGAAGCAGTTTACTTCCGTATTTATTCATTTCTTCGTTTATTTATATTCG
AAGCATATGCTTAGCGCGTCCAACCGCGTGGGCCGATTTGATTGTATATG
TACATGTACGAAGTATGTAGAGATCGACGGTTGCTAGACTGCTGGAAGGT
CATCCAACGATGAGTGGCTCTGAAATCACTTGCTTGCTGTACTACAGTAA
CTCTCTTGGTTATTTTTGAGACTCGTCCTCTTAATTACTTACTTGGTTGT
ACTTTTGTGATTGAAAACAAACGGCTGCAAAACTACTGGCGTATCATCAT
CCAACGATGAGTGACTCCGAAGAATCAGTACTCAAATACTACTACCGTAA
TCGGCGGAGAGATATTGCCCCCACGGGACAATTTTCGGGGGAATATTTAA
AGCCGGGAAGGCCCTCCAATTGTCCCGAAAACTCTCCGAAAAGTTACCCC
AGGTCCTGAGGGAGATTTTCCGAGTTCTCCTGCGCGAATCCGTCCAGTAT
TCGGCGAGAAACGTTCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTC
CGACGAATACGGTACTAGTACTGTCAGAGTACTCCTGCTCTGTCTCGAAC
GAGGCGCGTGGTCAATGGTCTCGGGACTACAGCAAGCACCACGTGAGTAC
ATATATACTGTCAGAGTACTACTGTACATGGCATCTGAGCTTGCAGACGC
TATTCCCTCCAGGATCTTCCCTCTCATCTATCCTCGCCACGCGCGTGCCC
CCCCCCCATTTGTTCCGTTTCTCTTTTTTCTTTTTTTCCCATCTTTTTTT
TTTGACGGGGGGGAGGCGGTCGCAATTACACCTTTCTTCCGAATATTTGG
GTTCGGGCATGCCCGAAAACCCGGGCAGCGCAATTTCTGCTTGCCGCACG
CAAATGTGCACGGGGGAACCAGGGACGGACGGCAGCGGACGGCACGGCCC
GTCCACTGCCAAGCCGTAACTGCTTCACCCCTGCTAAATGGGACTCACAC
ACTAGGACCCTATGATTATACGAACCCCCAGGGCCAAAAGGTTAACCTCC
TCCCCCCCTCCCGCTTGTCCTTCCTCCCACCCCATCCTCTACCCCGCCCC
CCTCCCTTCCCCCACCCCGGCAGTCTCTCCGATGACGACGACGAGAGTGA
CGAGGAGGAAGAGCGGGGCCTGGAGGCCCTCAAGCGCTCCAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3172934..3177777-

>mRNA_S-ischiensis_contig8.19678.1 ID=mRNA_S-ischiensis_contig8.19678.1|Name=mRNA_S-ischiensis_contig8.19678.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1716bp|location=Sequence derived from alignment at S-ischiensis_contig8:3172934..3177777- (Schizocladia ischiensis KU_0333)
GGCGCCGGGGTGGGGGGCGACAAGGGCGGGGACAGCGACGGGGAGGAGGA
GGTGGGCGAACCGGAGGAGCTTCACCTACCGGTGCTGCCGCGCCCCCCTA
AGGGGGCGGATGTGTTCATAGCAAGGCTGCCCAACATCCTGGGGGTGAAG
ACGGAGCCCTTTGACCCGGACACCTTCCGGCAGCAGGAGGGCGCCGGGGT
GGGGGGCGACAAGGGCGGGGACAGCGACGGGGAGGAGGAGGTGGGCGAAC
CGGAGGAGCTTCACCTACCGGTGCTGCCGCGCCCCCCTAAGGGGGCGGAT
GTGTTCATAGCAAGGCTGCCCAACATCCTGGGGGTGAAGACGGAGCCCTT
TGACCCGGACACCTTCCGGCAGCAGGAGGAGGCGGACGAGTTCAAGTTCA
CGACCAACATAATCCGCTGGCGCTATAAGAAGGACGCTATGGGCAACCTG
GAGAGGGACCAGGAGGGCAAGCCCGTGAGGGAGACCAACACCCGCCTGGT
GAAGTGGAGCGACGGCACCTACCAGCTGCTGGTGGGGGACGAGGTGTTTG
ACGTAAACGTCAACCAGACCGAGAGGAGGCGGACGAGTTCAAGTTCACGA
CCAACATAATCCGCTGGCGCTATAAGAAGGACGCTATGGGCAACCTGGAG
AGGGACCAGGAGGGCAAGCCCGTGAGGGAGACCAACACCCGCCTGGTGAA
GTGGAGCGACGGCACCTACCAGCTGCTGGTGGGGGACGAGGTGTTTGACG
TAAACGTCAACCAGACCGAGAGGAACTCCATGCTGTATGTGCACGTGCAG
CAGGCGGGGCAGGGCAGCGCCAGCTGCCTGGAGTGCCAGGGGGAGCTGCG
CAAGAAGATGGTCTTCAAGCCCAGCAGCCTGAAGAGCAACGCGCACCGCA
ACCTTACCCTCACGGCCCGTCAGGAACTCCATGCTGTATGTGCACGTGCA
GCAGGCGGGGCAGGGCAGCGCCAGCTGCCTGGAGTGCCAGGGGGAGCTGC
GCAAGAAGATGGTCTTCAAGCCCAGCAGCCTGAAGAGCAACGCGCACCGC
AACCTTACCCTCACGGCCCGTCAGGCGGCTCACAAGATGGGCAAGATGAA
GACGTTCGCCGAGACACAGGACCCGGAGACGGTCAAGCTGCGGAGGGCAA
GGGCGGAGGAGGAGCGCCAGAAGGGGGAGGCCCGCAAGATGCGGACGTAC
AGCGGCTCACAAGATGGGCAAGATGAAGACGTTCGCCGAGACACAGGACC
CGGAGACGGTCAAGCTGCGGAGGGCAAGGGCGGAGGAGGAGCGCCAGAAG
GGGGAGGCCCGCAAGATGCGGACGTACAACAAGCATGGGATGGGGTCTGG
TCGCCCCCCGGGTATGGACATCTCCTACCTGGAGGACGGTGCGTACGACA
GCACCTCTGTCAGGGGGATCAAGGCTGGTGCGCGCGCCGGGCGTTACGAC
AGACAAGCATGGGATGGGGTCTGGTCGCCCCCCGGGTATGGACATCTCCT
ACCTGGAGGACGGTGCGTACGACAGCACCTCTGTCAGGGGGATCAAGGCT
GGTGCGCGCGCCGGGCGTTACGACAGTCTCTCCGATGACGACGACGAGAG
TGACGAGGAGGAAGAGCGGGGCCTGGAGGCCCTCAAGCGCTCCAGGTCTC
TCCGATGACGACGACGAGAGTGACGAGGAGGAAGAGCGGGGCCTGGAGGC
CCTCAAGCGCTCCAGG
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