mRNA_S-ischiensis_contig8.19668.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19668.1
Unique NamemRNA_S-ischiensis_contig8.19668.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.090e-32
Identity = 86/174 (49.43%), Postives = 104/174 (59.77%), Query Frame = 1 
Query:    4 APALLHVALHHNGCKLLLRLLAPDRAKYLDPEEHKLLEPVMVPSKPTAAASTAEGGEGKKADATSSSAEKDGEGD-MVPSSRKDLAVRRRELLAYLRQPLQDMCVAHTEALMRSPYAGSLVLLEVARALPSQELMAAMATAAAAPGRPGGSAKGEAVLPMMEDPTGHIVMKQLL 522
            APALL V+LH NGCKLLL L APD  KYLDPEE  LLEP MVP                        A+ +GE   +V +S+KD  VRR+ELLA+L+ PLQ +C  HT  LMRS +AG+ VLLEV + L + +L+AA+A AA A          E  L M EDP GH+ MKQLL
Sbjct:  613 APALLPVSLHRNGCKLLLYLAAPDATKYLDPEERHLLEPAMVPV-----------------------AQGEGEAPVLVCASKKDPEVRRQELLAFLKAPLQSLCQEHTAELMRSKFAGANVLLEVTKNLRTPDLVAAIAAAAVA-------VPEEGHLAMQEDPAGHLFMKQLL 756
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BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 8.360e-31
Identity = 89/192 (46.35%), Postives = 111/192 (57.81%), Query Frame = 1 
Query:    1 PAPALLHVALHHNGCKLLLRLLAPDRA-----KYLDPEEHKLLEPVMVPSKPTAAAS-------------TAEGGEGKKADATSSSAEKDGEGDMVPSSRKDLAVRRRELLAYLRQPLQDMCVAHTEALMRSPYAGSLVLLEVARALPSQELMAAMATAAAAPGRPGGSAKGEAVLPMMEDPTGHIVMKQLL 522
            P   L++V  H NGCKLLLRLLAPDR      +YL PEE +LL+P MVPS P AA               T  GG+G +               +VPSSRK+ +VRRRELLAYLR+PL++ C  +   LMRS  AGS+VLLE  RA+ + E++AA+  AA A    G        LPM EDP+ H+ MKQLL
Sbjct:  519 PGLPLVYVMGHTNGCKLLLRLLAPDRTGYAFFRYLHPEELELLKPTMVPS-PAAAXXXXXXXXXXXXXXXTKAGGQGTEVP-------------LVPSSRKEASVRRRELLAYLREPLREACATYAPMLMRSKCAGSVVLLEAIRAIGTPEIVAAVVEAACAKSHVG-------KLPMHEDPSAHLFMKQLL 689
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BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.930e-30
Identity = 86/186 (46.24%), Postives = 106/186 (56.99%), Query Frame = 1 
Query:    1 PAPALLHVALHHNGCKLLLRLLAPDRAKYLDPEEHKLLEPVMVPSKPTAAASTAE------------GGEGKKADATSSSAEKDGEGDMVPSSRKDLAVRRRELLAYLRQPLQDMCVAHTEALMRSPYAGSLVLLEVARALPSQELMAAMATAAAAPGRPGGSAKGEAVLPMMEDPTGHIVMKQLL 522
            P   L+ V  H NGCKLLLRLLAPD   YL PEE +LL+P MVPS P A                  GGEG +               +VPSSRK+ +VRRRELLA+LR+PL++ C  H   LMRS  AGS+VLLE  RA+ + +++AA+  AA    R G        LPM EDP+ H+ MKQLL
Sbjct:  562 PRLPLVGVMCHKNGCKLLLRLLAPDHTGYLHPEELELLKPTMVPS-PAAXXXXXXXXXXXXXXXPKAGGEGTEVP-------------LVPSSRKEASVRRRELLAFLREPLREACATHAPMLMRSKCAGSVVLLEAIRAIGTPQVVAAVVKAACGKPRVG-------KLPMHEDPSAHLFMKQLL 726
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BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Match: A0A7S1CXQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXQ3_CYCTE)

HSP 1 Score: 62.0 bits (149), Expect = 3.860e-8
Identity = 51/134 (38.06%), Postives = 66/134 (49.25%), Query Frame = 1 
Query:   13 LLHVALHHNGCKLLLRLLAP---DRAKYLDPEEHKLLEPVMVPSKPTAAASTAEGGEGKKADATSSSAEKDGEGDMVPSSRKDLAVRRRELLAYLRQPLQDMCVAHTEALMRSPYAGSLVLLEVARALPSQELM 405
            LL +AL+ N  KL L LL P   +R KYLDP E  +L   + P+   A                         G  VP+SRK+   RR+EL+ YLRQPL  MCV H+E L+ S   G+ V  EV  A   +EL+
Sbjct:  148 LLELALNENASKLFLLLLVPQQENRQKYLDPFERAVL--TLNPTITEA-------------------------GQEVPTSRKNPETRRKELMVYLRQPLIQMCVDHSEELLGS-LPGARVFKEVYAAYRPRELV 253
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BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Match: A0A7S1C698_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C698_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.800e-5
Identity = 41/100 (41.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:  226 DMVPSSRKDLAVRRRELLAYLRQPLQDMCVAHTEALMRSPYAGSLVLLEVARALPSQELMAAMATAAAAPGRPGGSAKGEAV-LPMMEDPTGHIVMKQLL 522
            ++VP+SRKD A RR ELL  L  PLQ+MC+  T  L R  Y G+ VLLE  R        AA   A A        A  EA    + E P  H+++K+LL
Sbjct:   47 ELVPTSRKDDAQRRAELLEALAAPLQEMCLTETSLLCRDKY-GADVLLEAVRVFSPMPTQAAHNLAGAV-----ADAFAEADDYELYEVPCAHLLLKRLL 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835Z7T9_9STRA2.090e-3249.43Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
D7FHP3_ECTSI8.360e-3146.35PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K7W3_9PHAE2.930e-3046.24PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S1CXQ3_CYCTE3.860e-838.06Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1C698_9STRA7.800e-541.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3124601..3126681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.3
Seed ortholog evalue3.6e-27
Seed eggNOG ortholog2880.D7FHP3
Preferred namePUF8
KEGG koko:K14844
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2050@1,KOG2050@2759
Ec32 ortholog descriptionPumilio RNA-binding repeat protein
Ec32 orthologEc-07_006210.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size526
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19668.1prot_S-ischiensis_contig8.19668.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3124602..3126681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817297.0176375-CDS-S-ischiensis_contig8:3124601..31246431622817297.0176375-CDS-S-ischiensis_contig8:3124601..3124643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3124602..3124643 -
1695741005.4935994-CDS-S-ischiensis_contig8:3124601..31246431695741005.4935994-CDS-S-ischiensis_contig8:3124601..3124643Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3124602..3124643 -
1622817297.0299156-CDS-S-ischiensis_contig8:3125031..31252111622817297.0299156-CDS-S-ischiensis_contig8:3125031..3125211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3125032..3125211 -
1695741005.5051587-CDS-S-ischiensis_contig8:3125031..31252111695741005.5051587-CDS-S-ischiensis_contig8:3125031..3125211Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3125032..3125211 -
1622817297.0416036-CDS-S-ischiensis_contig8:3125922..31261421622817297.0416036-CDS-S-ischiensis_contig8:3125922..3126142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3125923..3126142 -
1695741005.5147204-CDS-S-ischiensis_contig8:3125922..31261421695741005.5147204-CDS-S-ischiensis_contig8:3125922..3126142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3125923..3126142 -
1622817297.0560272-CDS-S-ischiensis_contig8:3126598..31266811622817297.0560272-CDS-S-ischiensis_contig8:3126598..3126681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3126599..3126681 -
1695741005.524147-CDS-S-ischiensis_contig8:3126598..31266811695741005.524147-CDS-S-ischiensis_contig8:3126598..3126681Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3126599..3126681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19668.1

>prot_S-ischiensis_contig8.19668.1 ID=prot_S-ischiensis_contig8.19668.1|Name=mRNA_S-ischiensis_contig8.19668.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=175bp
PAPALLHVALHHNGCKLLLRLLAPDRAKYLDPEEHKLLEPVMVPSKPTAA
ASTAEGGEGKKADATSSSAEKDGEGDMVPSSRKDLAVRRRELLAYLRQPL
QDMCVAHTEALMRSPYAGSLVLLEVARALPSQELMAAMATAAAAPGRPGG
SAKGEAVLPMMEDPTGHIVMKQLLR
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mRNA from alignment at S-ischiensis_contig8:3124601..3126681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19668.1 ID=mRNA_S-ischiensis_contig8.19668.1|Name=mRNA_S-ischiensis_contig8.19668.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2081bp|location=Sequence derived from alignment at S-ischiensis_contig8:3124601..3126681- (Schizocladia ischiensis KU_0333)
CCTGCACCAGCTCTGCTGCACGTGGCGCTTCATCACAATGGGTGCAAGCT
GCTGCTTCGCCTGCTGGCCCCGGACCGCGCCAAGTGAGGCAGTTGGTTTC
TCGTTCTCTCAATGCCGGGCAGGAGGGCAAACCCGAGTTTTGCCTTTGGG
CTGTCGACCAAGAACGCAAGGTTATGTCACAAGACGAGCCAATGAGTGCA
CACTACAGTGCATACTTCGGAAGTAGTATACGTACACACACATACACTGC
TTATTGCACGCGCCGTTTTCGTTGGGAAGATGCCGTTGGCTACATTGCAA
TGCGCGCAGCATGCCCCCACTGATCATGCTGTGCTGGCCCCGACACAATC
GAAGAGTAGCCCGCAACACGGTTGCCCCCCAAAATTGCCACTCTACAGTA
CATAGCGACTACTGTAGTACGAGAACACTCAGTCTCACACACGTGCGATT
GTACCTCGGTACAATTTATATGAATCGCCACCCTACAGCCATGCCAACCC
TCCCCCCACCCATGCGCCTCCCCGCTCCCTATCTTCCAGGTACCTCGACC
CAGAGGAGCACAAGCTTCTCGAGCCGGTTATGGTTCCCTCCAAGCCCACC
GCCGCCGCCAGCACCGCGGAAGGCGGGGAAGGGAAGAAGGCAGATGCGAC
TTCCTCTTCGGCAGAGAAGGATGGGGAAGGGGACATGGTTCCGTCCAGCC
GGAAGGACCTGGCGGTCCGGCGACGGGAGCTGCTGGCGTACCTGCGGCAG
CCGTTGCAGGTGAGGGATGTCGATGTGATGTGGTGTGATTTCAGGGTACC
ACAAGTTAAGAGTACACATCACATCACATCGTTATCATTTCACATGGTGT
GATGTGATGTCAAAGTACCATACGTTGGAGTAAACATCGCACCCCCCCAG
AGGACAACAGGGAGAGGATACAGTGCTCCGTCGCCCCTGTCGGACGCATG
GTTGATGACCGTATGGCTGCAGCAGGCAACACATGAACCCCCCCCCCCCG
CCCACCCACGGAGAAGTTGGCCGTAGCCAGCTCCCCCAACAAGGAGAGGC
TGTCCGTGGCCGTGGCCAGCCCCCACCAGCACGGAGAGGTTGGCCGTAGC
AAGCCTCCCAAACAACAGAGGAAACAGTGCTCCAGCCCGTAAGGTCGCCC
CCGCGAGACGCCCTGGTGGTCAGTGGTCAAATGGCTACAATACGGCAGGC
AACTCATGAGTACCTACACCCCCCCCGCCCGCATTTTCGCTTGCGCACGG
CTCGGCGCAGGGCGTGTTCAGCAGTCGAATGGCTACGGCAGGCAACTCAT
GAACACTCTACGCCCCCCCCCCCCGACCGCGCCCGCATTTTCGCCTGCGC
GCGGCTCGGCGCAGGGCGTGTTCAGCCATCGAATGGCTACGGCAGGCAAC
TCATGAGCACTTTACGCCCCCCCCCCCCGCCCGTGCCCGCATTTTCGCTT
GTGCACACGGCTCGGCACAGGACATGTGTGTGGCGCACACAGAGGCCCTC
ATGCGTTCCCCGTACGCGGGATCTCTGGTGTTGCTGGAGGTAGCCCGGGC
GCTGCCGTCCCAGGAGCTCATGGCTGCCATGGCGACTGCTGCCGCGGCTC
CCGGGCGGCCGGGGGGGAGTGCGAAGGGCGAGGCTGTCCTGCCCATGATG
GTGAGCAGAAGAGCCCTCTGTACACGAAGCAGGAGCCTCTGTACTGCGAA
TGACATGGAGCAGCAGCCTCTGTACTGTAAATGGCTTGTACTGTAGTACT
GCCATAATCAATCGTCGGAAGAGGAGCTAAAGACCCCGCTCCTTCACCCC
ATGCCATAATAATTGGAAGTATATGTGGTGTGATGCCATGTTAAACAATG
GCTCATTAGACTCCACATAACATCACATCACGTGCCGCAATCAATCGTCG
GAGAGGTAAAGACCTTGCCCTCCCAATCCTAATTTTCGGCGAATACGGGG
GCGAATACGGGAGAGCATGCCCCCGTTGTAGCTCTCTGCCCGGTCGTTTT
AACTCTTCATCCCCCCTCGGTAACACCCCGCCCCCCAGGAGGACCCGACG
GGCCACATTGTGATGAAGCAGCTGCTGCGGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3124601..3126681-

>mRNA_S-ischiensis_contig8.19668.1 ID=mRNA_S-ischiensis_contig8.19668.1|Name=mRNA_S-ischiensis_contig8.19668.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1050bp|location=Sequence derived from alignment at S-ischiensis_contig8:3124601..3126681- (Schizocladia ischiensis KU_0333)
CCTGCACCAGCTCTGCTGCACGTGGCGCTTCATCACAATGGGTGCAAGCT
GCTGCTTCGCCTGCTGGCCCCGGACCGCGCCAACCTGCACCAGCTCTGCT
GCACGTGGCGCTTCATCACAATGGGTGCAAGCTGCTGCTTCGCCTGCTGG
CCCCGGACCGCGCCAAGTACCTCGACCCAGAGGAGCACAAGCTTCTCGAG
CCGGTTATGGTTCCCTCCAAGCCCACCGCCGCCGCCAGCACCGCGGAAGG
CGGGGAAGGGAAGAAGGCAGATGCGACTTCCTCTTCGGCAGAGAAGGATG
GGGAAGGGGACATGGTTCCGTCCAGCCGGAAGGACCTGGCGGTCCGGCGA
CGGGAGCTGCTGGCGTACCTGCGGCAGCCGTTGCAGGTACCTCGACCCAG
AGGAGCACAAGCTTCTCGAGCCGGTTATGGTTCCCTCCAAGCCCACCGCC
GCCGCCAGCACCGCGGAAGGCGGGGAAGGGAAGAAGGCAGATGCGACTTC
CTCTTCGGCAGAGAAGGATGGGGAAGGGGACATGGTTCCGTCCAGCCGGA
AGGACCTGGCGGTCCGGCGACGGGAGCTGCTGGCGTACCTGCGGCAGCCG
TTGCAGGACATGTGTGTGGCGCACACAGAGGCCCTCATGCGTTCCCCGTA
CGCGGGATCTCTGGTGTTGCTGGAGGTAGCCCGGGCGCTGCCGTCCCAGG
AGCTCATGGCTGCCATGGCGACTGCTGCCGCGGCTCCCGGGCGGCCGGGG
GGGAGTGCGAAGGGCGAGGCTGTCCTGCCCATGATGGACATGTGTGTGGC
GCACACAGAGGCCCTCATGCGTTCCCCGTACGCGGGATCTCTGGTGTTGC
TGGAGGTAGCCCGGGCGCTGCCGTCCCAGGAGCTCATGGCTGCCATGGCG
ACTGCTGCCGCGGCTCCCGGGCGGCCGGGGGGGAGTGCGAAGGGCGAGGC
TGTCCTGCCCATGATGGAGGACCCGACGGGCCACATTGTGATGAAGCAGC
TGCTGCGGGAGGACCCGACGGGCCACATTGTGATGAAGCAGCTGCTGCGG
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