mRNA_S-ischiensis_contig8.19667.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19667.1
Unique NamemRNA_S-ischiensis_contig8.19667.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:3090260..3095343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1694
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19667.1prot_S-ischiensis_contig8.19667.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 3090784..3095142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.569333-UTR-S-ischiensis_contig8:3090259..30907831622817262.569333-UTR-S-ischiensis_contig8:3090259..3090783Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3090260..3090783 -
1695740978.5665867-UTR-S-ischiensis_contig8:3090259..30907831695740978.5665867-UTR-S-ischiensis_contig8:3090259..3090783Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3090260..3090783 -
1622817262.6297238-UTR-S-ischiensis_contig8:3095142..30953431622817262.6297238-UTR-S-ischiensis_contig8:3095142..3095343Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3095143..3095343 -
1695740978.6019304-UTR-S-ischiensis_contig8:3095142..30953431695740978.6019304-UTR-S-ischiensis_contig8:3095142..3095343Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 3095143..3095343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.5815988-CDS-S-ischiensis_contig8:3090783..30916711622817262.5815988-CDS-S-ischiensis_contig8:3090783..3091671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3090784..3091671 -
1695740978.5794396-CDS-S-ischiensis_contig8:3090783..30916711695740978.5794396-CDS-S-ischiensis_contig8:3090783..3091671Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3090784..3091671 -
1622817262.591954-CDS-S-ischiensis_contig8:3095061..30951421622817262.591954-CDS-S-ischiensis_contig8:3095061..3095142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3095062..3095142 -
1695740978.5908737-CDS-S-ischiensis_contig8:3095061..30951421695740978.5908737-CDS-S-ischiensis_contig8:3095061..3095142Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 3095062..3095142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19667.1

>prot_S-ischiensis_contig8.19667.1 ID=prot_S-ischiensis_contig8.19667.1|Name=mRNA_S-ischiensis_contig8.19667.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=323bp
MVRTRSMSVPNATFGSLDDSALKHILELVGPGSHALACCTRDMRRVWPWP
RETAWAAVLCTDNPACMSLALDWGANKNKACEKAARLGALECLKRARDAG
CPWQGMAWNRCTCSEAAKGGHLAVLQWARAQGCPWYANICWEAAMHGHLE
VLQWARAQGCPSSGTTCDAAAWRGDLAMLPWLRAQRCPCDGGRVCGAAAG
GGNLEVLQWLRAEGCAWDEYTCNFAAFGGNLTALQRLRAQGCPWNSDTCE
VAAWTGNLAERVRAWEEESYRETVAGPGGCGRLRFDLLMRDANLRGCPQQ
VLDEYGDDNYTGHLLCLEGGGA*
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mRNA from alignment at S-ischiensis_contig8:3090260..3095343-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19667.1 ID=mRNA_S-ischiensis_contig8.19667.1|Name=mRNA_S-ischiensis_contig8.19667.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5084bp|location=Sequence derived from alignment at S-ischiensis_contig8:3090260..3095343- (Schizocladia ischiensis KU_0333)
AGGAGAGTCACCTGCAGCTGTTGCCCCGGGCAGCTGCGGCTGAGCTGCAG
CACCCCCCCGGGAAAGACACACGAGAGGGCGAAGAGGGAGTTCTCCGTCT
CTTGTACAATTGTAGTGCAGAGAAGCTGCCTGTAACTCCTGCGGGTCGCC
CGCCTACCTCGAAGACCGTGCCACCCCTGCTCAGGCGAACGGGCCGGTAC
AATGGTGCGAACACGGAGCATGTCCGTACCAAACGCGACGTTCGGCTCCT
TGGACGACAGCGCACTCAAGCACATCCTTGAGGTGAGTCCGCACCAGTCT
TGGAATTTGAAGCTGTGCCGGCCGGTGATGATGTACTGTAGGTCTGCTGC
AGTTTGCAGGGCGTGGAAACGTAGGCCCCCATGAAACTGTTCTTTGCAGT
TGTAAGCACTGTAGTAGGGAGGTGTGGCCTCACCTGGGTACTGACAGACG
GTGGCAAAAGGCGCTTTTATAGGCTTGAAGAAAGTTTCGGGCTCCCAGGT
GTGCATTGTGGGTCGAGCTCACGATGTTGCCACGTGCAGTAGCTGCTGTA
TTGACGGATAACGAATAGGTGGCGAAACGCGCCCGCACTTGGAAGTATTT
GAACGATTTTTTATGTCAGGGCCGATGGGAATGCTTTTCGCAAGCCTAGC
TGGTGGTCGGGATATCCTTCCTCCACATTGGTGAAAAGCACATGTTTCGG
GCGCATACCCACAGTACCCTGCCGTCGAATTCTTTGGCTTCATCTTTTCC
CCTGGAATCATCCTCGGAAATTTGTGCTTTGCAGGGCCTCCGACAGGCCC
TACGATAGCCCTGCTAGAAAATTGCGTTTGTGTTTGCCCAAATATTTTGT
GGAGTCTCGACATATTTGCCCGTATGGTACTTACCTGTACAGCGAGTGTG
CGCGAGCCCGTTGGGTCGGAATCTCGGCCAGCATCAGCCCAAGCATAGGG
AAACATCTCGATTTTCTGCCAATTTGTAGGCGTTTCACGTGAAGTTGCAG
GCGTGATTTTCCTCCGTAAGTACGCACATGAGTGCCTGTGCAGGGGGACT
CAGTTCCTGATCAAGGCATTTTGGGCCGAGATGTGCTCAAATCTCGAACA
TTTTGCCGACAATCTCATTTTTTTGTGAAACGCTGCCCACATCCCCATAT
GGATATCGTCGTCCTGTTGTAGCAGGGTTATCGTATTCGAAGTACGTGCC
CGGACAACATCAGGAGCCGAGGCCCCAGGCGGAATTGCGGTGCGGCACGA
GTACTGTACTATGCTGTGCTGTGCTGTACTGTACTCGTACTCCACGAGTA
CTGTACTGTACTGCACTGTGCTGTACTGTTCTTTACTGTACCCGTGCCCC
GGGCACAGGGGAACCCCAGTGTGGGCGGACACGCGCAGAACGCGAGCATG
GGGTAAATACTTCGTTGCTAGTGTGGGTATCGAGATAGGATGACACTTAC
AGTAGGAGGTTAGAGTAGAAGGGCTAAATGGTAGTAGTGGTGGTGCAATC
GCGCATGTGTGAAATTGTGAGTGTCCTCGTGGGGGCGTTGGAGCGGTTCA
AACATTCATTGGAGTGCTTCGAAGTAAGAAATCAGACACATACTATTGTA
CTAGGTACTGCGCTGGCTATACAGCAGCAGTGATGGAATATCGATCAGTA
GATAGCTATCGGGCTCGACTGATTTTATGGTGGCGTTACTAACTACTTGG
ATTTAGCGTGGGTCAAACTATCGAATATCAACTATCGATAGATATATAGG
TCAGTACTGTCGATAAACAGTTTGATTTGCTTAGATATTCCATCACTGTA
CTGCATTTTTTTGTTGCGTGGACCACCCGTTCTTTTCCCGGGTACTTTGA
AGTACTTGTACCTATTCCATGTACGTCATGGCAGGTCTCGGCGAGGAATG
ATGCCCTCACCAGTTCCCACTGAGCAACCTGACTGCGCCGGTCGGGCAGC
AACAGCAGGGTGCAGCGTCAGGGTACAGTACAGTACAGCACAGTACAGTG
CACCAAAACTGCTACAGTACAGTAGTGCAGCACAGCACAGTACAGTACAT
TTCCGGAATTTTCTGCCGCGTGAACACCGGCGTGTGGTTTCATGTGGCAT
GATATAGTTGACTATATATGCACTCATTCACTGTCTCACAACCCTTGTAC
TGTAGGTTCGAACCTCGGGTTTGCCCTCGGACAGGGTTTTTCCGTTGTAT
TGATCGATTTGGCTCTTGTATTGATCAATTTTAGCTGTTGTACGAGTATT
GATCGATTTCCTTCCAAGTCTGCTCGTACACTTGTGTGTGTGCGTGTGTG
TGTACTGGTTGGCTGTTCTTGCGTGATGATCTTGCGTGCCTGATCGACAG
CCCACAGCTACAGTTCGGGCTTGCCCTCTGACCGGAGTATTAGCAGGGAA
AACACAGGGCGAGGTGCGGGCCGTGCTTCATGTAAATTGTAACGAGGTAC
AAACGCACGTGTGTGCGATTGACTGTTCTCGTACTAGTAGTTGTTGGTTT
ATTTAAGGCGAGATGCGGGCCACATCACTAAAGACCTCAACTGTTACAGT
GATGTGATGTGGTTTGTACTCTAATGTTCAGTATCGTAATTGTCGGAGAA
ATTTTGACCCCACGGGCCAATTTTCGGGGGAATATTTCTAGCCGGGATGG
TCCTGAATTGTCCCGAAAGCTCTCGGAAAAGTTCCCCCGGGTCCTGAGGG
AGATTTTCCGAGTTTTCCCGCGCGAATCCGACCAGTGTTCGGCGAGAAAC
GTTCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTCCGACGATTTCGG
TAGTTTGACATCAAATCACATCGCATCACATCCAACCATGTCCCTAAAGA
CCCCCGACGGAGTACTGTAGGTAGCTATTCAGCCATTGGCTCTCGCATCC
CAACGCAGACTATATGGTACATCCAGGGGACTGGCAAGTACAGGGAAGTA
AACTACATGTACTATTATACGTGCTGTCTAGGCGAGTGGTCTACCGACGG
CTTTCGCGAGCCCAAGGTTGTGAGTTCGATTCCCTGTGTGGGGTTGATTT
TCCGCGAAAAATGGACCCCTCCCGAAACACGCGCAAATTTGAGAAAATCA
TGAGAGCCGTACCGGCTTGTCGGCCTCGGGTCCAATGACAAAGTCGGGAT
CGGCGGGCGCCTGTCCGGTAAAAACCCGGGATGCTCCGGCCCGGCGTAGT
AGGGCCGCGTGGCCAATGGCCGCAAGGCTACCCCGTGTGGGGGCCGACCC
CCGGGCCAGCACGGAGTATACTGGCTCGAGTCGGTGGCAAGCACAGGATG
GGATCCTCATCTGCCATGAGTACACACACTATTGTAGTACTCGAGCAGTA
CTCTACTACCGTAATCGTCGGAGAGATCTTGCCGCCACATGCCAGTTTTC
GGGAGAACTTCTCTCGCCGAATACTGGTCGGATTCGCGCGGGAAAACTCG
GAAAATCTCCCTCAGGACCTGGGGGAACTTTTGGGAGTTTTCGGGACAAT
TCAGGACCTTCCCGCCTAGAAATATTCCCCCGAAAATTGTCCCATTGGGG
CAAAATCTGTCCGACGATTGCGGTAACTTACAGAGTTTCCCACACCTGCC
CCCACTTGCCCGCCAAAATCGTGGATGCTCCTCGTCTTGTCTTGGACGAT
ACTTGTCCTTGTACTTGTACAGCTTGTGGGGCCCGGCTCGCACGCCCTGG
CCTGCTGCACTCGAGACATGCGGAGGGTGTGGCCGTGGCCCAGGGAGACC
GCTTGGGCAGCTGTGCTGTGCACGGACAACCCGGCGTGCATGTCTCTGGC
GCTGGACTGGGGGGCCAACAAGAACAAAGCCTGCGAAAAGGCTGCTCGTC
TTGGGGCTCTGGAGTGTCTCAAGCGTGCAAGGGATGCAGGCTGTCCCTGG
CAGGGAATGGCATGGAATCGGTGTACTTGTTCAGAGGCAGCCAAGGGGGG
GCATCTTGCAGTGTTGCAGTGGGCACGGGCACAGGGGTGTCCATGGTATG
CCAATATTTGTTGGGAGGCAGCCATGCACGGGCATCTTGAAGTTCTGCAG
TGGGCCCGGGCACAGGGGTGTCCGTCAAGTGGGACTACGTGTGATGCGGC
TGCTTGGCGGGGTGACCTTGCCATGCTGCCGTGGCTGAGGGCGCAGCGCT
GTCCCTGCGATGGAGGCCGGGTTTGCGGTGCGGCAGCTGGGGGGGGGAAC
CTTGAGGTGCTGCAATGGCTGAGGGCGGAAGGGTGTGCTTGGGATGAGTA
TACTTGTAACTTTGCAGCGTTTGGTGGCAACCTGACAGCGCTGCAGCGGC
TGAGGGCCCAAGGGTGTCCCTGGAACAGCGATACGTGCGAAGTTGCTGCC
TGGACAGGAAACCTTGCTGAACGGGTGCGCGCCTGGGAGGAGGAATCGTA
TCGTGAGACAGTCGCGGGACCTGGGGGCTGTGGCCGGCTCCGGTTTGATC
TACTCATGAGGGACGCCAACTTGCGTGGTTGCCCGCAGCAGGTGTTGGAT
GAGTATGGGGACGATAATTATACAGGGCACCTGTTGTGCCTTGAGGGGGG
TGGCGCGTGAGGCAAAACTTAAACAAGTCGAAGTAGGTGGGACCGGGGGG
TGGTGGCCAGTATTTGGGGTCCGTAGGCGCAGCATCCCTGCCTGTGAAAG
AGATTGTACTGTGTAGGATTTTAGTTTCAGTTGCAGTTTTGGCCGGAGTC
CAACAAAGGAGTGACGGCCAACCGAGAGCCGTTGAGCCGTAATTGCTCCA
CGCCAGCGAGCATGAAGTAGGTAGATGAGTGCCGTGGTACGGTGTGTGTG
TGTGTGTAGCACAGTAGAGCTACAGAATGGTTTCAATACACTCAGGCTAT
AGAACAGGACACAACATCAAGTGCCGAGAACGCGTAATCAAAACGTGCTA
TTTCCATGGTCGGGTCCAGAGTCGTGTCCGTGCCCGCAGACTTTGCAGGC
GTGCGTAGCTAGCGCAATGCACCTACCCATTGCTTGCGGGGCTCATTCAC
AGAGAGGTGGTGGAAATATGCCGGCCGGAGGAGGGCAGGCACGGGAGATT
GAAGCCGGAAACTTGAACGCCTTCCAAGCAGTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:3090260..3095343-

>mRNA_S-ischiensis_contig8.19667.1 ID=mRNA_S-ischiensis_contig8.19667.1|Name=mRNA_S-ischiensis_contig8.19667.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1938bp|location=Sequence derived from alignment at S-ischiensis_contig8:3090260..3095343- (Schizocladia ischiensis KU_0333)
ATGGTGCGAACACGGAGCATGTCCGTACCAAACGCGACGTTCGGCTCCTT
GGACGACAGCGCACTCAAGCACATCCTTGAGATGGTGCGAACACGGAGCA
TGTCCGTACCAAACGCGACGTTCGGCTCCTTGGACGACAGCGCACTCAAG
CACATCCTTGAGCTTGTGGGGCCCGGCTCGCACGCCCTGGCCTGCTGCAC
TCGAGACATGCGGAGGGTGTGGCCGTGGCCCAGGGAGACCGCTTGGGCAG
CTGTGCTGTGCACGGACAACCCGGCGTGCATGTCTCTGGCGCTGGACTGG
GGGGCCAACAAGAACAAAGCCTGCGAAAAGGCTGCTCGTCTTGGGGCTCT
GGAGTGTCTCAAGCGTGCAAGGGATGCAGGCTGTCCCTGGCAGGGAATGG
CATGGAATCGGTGTACTTGTTCAGAGGCAGCCAAGGGGGGGCATCTTGCA
GTGTTGCAGTGGGCACGGGCACAGGGGTGTCCATGGTATGCCAATATTTG
TTGGGAGGCAGCCATGCACGGGCATCTTGAAGTTCTGCAGTGGGCCCGGG
CACAGGGGTGTCCGTCAAGTGGGACTACGTGTGATGCGGCTGCTTGGCGG
GGTGACCTTGCCATGCTGCCGTGGCTGAGGGCGCAGCGCTGTCCCTGCGA
TGGAGGCCGGGTTTGCGGTGCGGCAGCTGGGGGGGGGAACCTTGAGGTGC
TGCAATGGCTGAGGGCGGAAGGGTGTGCTTGGGATGAGTATACTTGTAAC
TTTGCAGCGTTTGGTGGCAACCTGACAGCGCTGCAGCGGCTGAGGGCCCA
AGGGTGTCCCTGGAACAGCGATACGTGCGAAGTTGCTGCCTGGACAGGAA
ACCTTGCTGAACGGGTGCGCGCCTGGGAGGAGGAATCGTATCGTGAGACA
GTCGCGGGACCTGGGGGCTGTGGCCGGCTCCGGTTTGATCTACTCATGAG
GGACGCCAACTTGCGTGGTTGCCCGCAGCAGGTGTTGGATGAGTATGGGG
ACGATAATTATACAGGGCACCTGTTGTGCCTTGAGGGGGGTGGCGCGTGA
CTTGTGGGGCCCGGCTCGCACGCCCTGGCCTGCTGCACTCGAGACATGCG
GAGGGTGTGGCCGTGGCCCAGGGAGACCGCTTGGGCAGCTGTGCTGTGCA
CGGACAACCCGGCGTGCATGTCTCTGGCGCTGGACTGGGGGGCCAACAAG
AACAAAGCCTGCGAAAAGGCTGCTCGTCTTGGGGCTCTGGAGTGTCTCAA
GCGTGCAAGGGATGCAGGCTGTCCCTGGCAGGGAATGGCATGGAATCGGT
GTACTTGTTCAGAGGCAGCCAAGGGGGGGCATCTTGCAGTGTTGCAGTGG
GCACGGGCACAGGGGTGTCCATGGTATGCCAATATTTGTTGGGAGGCAGC
CATGCACGGGCATCTTGAAGTTCTGCAGTGGGCCCGGGCACAGGGGTGTC
CGTCAAGTGGGACTACGTGTGATGCGGCTGCTTGGCGGGGTGACCTTGCC
ATGCTGCCGTGGCTGAGGGCGCAGCGCTGTCCCTGCGATGGAGGCCGGGT
TTGCGGTGCGGCAGCTGGGGGGGGGAACCTTGAGGTGCTGCAATGGCTGA
GGGCGGAAGGGTGTGCTTGGGATGAGTATACTTGTAACTTTGCAGCGTTT
GGTGGCAACCTGACAGCGCTGCAGCGGCTGAGGGCCCAAGGGTGTCCCTG
GAACAGCGATACGTGCGAAGTTGCTGCCTGGACAGGAAACCTTGCTGAAC
GGGTGCGCGCCTGGGAGGAGGAATCGTATCGTGAGACAGTCGCGGGACCT
GGGGGCTGTGGCCGGCTCCGGTTTGATCTACTCATGAGGGACGCCAACTT
GCGTGGTTGCCCGCAGCAGGTGTTGGATGAGTATGGGGACGATAATTATA
CAGGGCACCTGTTGTGCCTTGAGGGGGGTGGCGCGTGA
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