mRNA_S-ischiensis_contig8.19661.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19661.1
Unique NamemRNA_S-ischiensis_contig8.19661.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2950143..2953956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size989
Cds size987
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19661.1prot_S-ischiensis_contig8.19661.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2950143..2953954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.3601801-CDS-S-ischiensis_contig8:2950142..29502181622817262.3601801-CDS-S-ischiensis_contig8:2950142..2950218Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2950143..2950218 +
1695740978.4371357-CDS-S-ischiensis_contig8:2950142..29502181695740978.4371357-CDS-S-ischiensis_contig8:2950142..2950218Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2950143..2950218 +
1622817262.3719652-CDS-S-ischiensis_contig8:2950443..29506661622817262.3719652-CDS-S-ischiensis_contig8:2950443..2950666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2950444..2950666 +
1695740978.4481082-CDS-S-ischiensis_contig8:2950443..29506661695740978.4481082-CDS-S-ischiensis_contig8:2950443..2950666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2950444..2950666 +
1622817262.3825996-CDS-S-ischiensis_contig8:2951398..29515251622817262.3825996-CDS-S-ischiensis_contig8:2951398..2951525Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2951399..2951525 +
1695740978.4574165-CDS-S-ischiensis_contig8:2951398..29515251695740978.4574165-CDS-S-ischiensis_contig8:2951398..2951525Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2951399..2951525 +
1622817262.3927448-CDS-S-ischiensis_contig8:2953393..29539541622817262.3927448-CDS-S-ischiensis_contig8:2953393..2953954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2953394..2953954 +
1695740978.4668632-CDS-S-ischiensis_contig8:2953393..29539541695740978.4668632-CDS-S-ischiensis_contig8:2953393..2953954Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2953394..2953954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19661.1

>prot_S-ischiensis_contig8.19661.1 ID=prot_S-ischiensis_contig8.19661.1|Name=mRNA_S-ischiensis_contig8.19661.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=329bp
GGSSDGLGDVELLQEAGLATVRNLAGSHPHNKQRLGRAGACQAVVHCLQA
CRCGGSPSRVSPGMQVGEPELLRRPGPADSDNDGDDDRSPARARRACARR
CAHALWAAKTLAIGHGGNREALAAAGMAKGVKGALLAHREDAEVAEAACV
AACALAWAPPGTPPSAVGRHWLRPRPAECSSEYPGRRPGSDTDSDAFSSR
PELCADPSPQADLFRLIPSAAGGVTVLDWPGHDSSAARVTPRGGPGAQSE
LQVLRVAAPLATRIRTAAGPGPARGRPGPSLRDSLAGVALRFPGPGHGRL
RAASVAAVRALDLAGRQRPLATGHALVME
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mRNA from alignment at S-ischiensis_contig8:2950143..2953956+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19661.1 ID=mRNA_S-ischiensis_contig8.19661.1|Name=mRNA_S-ischiensis_contig8.19661.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3814bp|location=Sequence derived from alignment at S-ischiensis_contig8:2950143..2953956+ (Schizocladia ischiensis KU_0333)
GGCGGTAGTAGCGACGGATTGGGGGACGTGGAGCTCCTTCAGGAGGCAGG
GCTCGCGACCGTGCGGAATCTGGCCGGTGAGTGTCAGTGCCTGCGGCTCC
ATTGTGGCAGATGGTTTATTCGAGGTACATACAGCACTGCTTGATGGATT
GCACCTCATTTCGCTGACAACCAGAGCGGTACATATGCGTAGTACAACTC
AACCTGCATTCGTGCAGGGGTTGCGTCACAAACCTACCTCCCCGCCCCAT
CCCAACCCCCCGTGCCCCCGACTCCACGCCCCCCGCACTGTCCGAGTCCA
GGGAGCCATCCCCACAACAAGCAGAGGCTGGGCCGTGCTGGAGCCTGCCA
GGCGGTGGTCCACTGCTTACAAGCGTGCCGTTGCGGTGGCAGTCCGAGTC
GTGTCAGCCCGGGCATGCAAGTCGGGGAGCCTGAGCTCCTGCGGCGGCCG
GGGCCAGCAGACTCGGACAACGACGGCGATGATGATCGCTCGCCGGCCCG
GGCGCGCCGGGCCTGCGCGCGCAGGTTGGTGATTCATATACATCGCAGTA
AATTGTATCGAGGTACAATATCCCACGTGTGTGAGGTTGAGTGTTCTCGT
ATCAGGCGTGTTTGCAGCCGCGGGACAGCAAAGCGGGTGCCGTAGGTAGC
TACTAGTACAACCAACAAGGAGAGGGTATGAAAGAGAGAGCGGCAAGCTT
GGTTGCTCTCTTCGTTTTGGGGGGTTTGCTGTTTGTTGTGTGGTGGAATC
TACAGAACGCCTAAGGCCCTTCCTGATGTTTCCCCTTCTCCACGCCGTAG
GACAATTACGAAACGGTCACGCGGGGCTACGCTTTTAGCCGTTCCTTCGA
CTACCCCCTTCTTGCATGCCGGGCACGCCCATTGTGAAGAGCTTTGAGCA
TGTTCCAGAAGTAAGCCATACCGACCCTGGACGTCCGTTTTCATGTGCTT
CAAAAGTATTTTCCAAGCGGCCCGGGCCCCTTGGCGGCGACTCAGGCTCC
GAAGACCAGCGGAGGTCGTGAACAACCAACCACTCAGGCTCCCTTTACTT
GACTCAGACACTTTTTTTTCGCTCTGAAGTACCATGGATCTGCTCCGTCT
CAACCGAGGCACGTGGTCAATGGTCGCGGGACTACGGCAAGCACAACGTG
AGTGCATATGCTCGTATATATATACATATATATATATATATATATATATA
TATGTCATCACAACCATGTCGGGCCGCGGCGGGGCGGTGCATGGCAACGT
ACGCAGGTGCGCGCACGCCCTCTGGGCGGCCAAGACCCTGGCCATCGGCC
ACGGGGGGAACCGGGAGGCCCTGGCGGCGGCCGGCATGGCGAAGGGCGTC
AAAGGGGCACTGCTCGCCCACAGGGAGGACGCGGTGAGTGCTCTCCGCGA
TGGCGAACATAGTACTGTCGAGTACGTATTGCTTGGAAGTGTGTGTACAT
ACCACGCGTGTGCGTTTACTGTCAGGCAAGGGAGAGTCAAGATTGCCAGT
GGGGGTTGCAAAGACCAGAACTATGCGTGCATTGTACAGTACTGCTGAAC
TTACACGTAGGTATTCGAGGTCGAAGTGATGCCTAGCGGCCTGGCCGAGG
AGGTGCAAACCCGGGGTGCTCTGTCCCGGGCCCCCGGCCTATTGCTACTG
GTATGCGAGAGCCAATGGCTAGATACTGTAGCTCATCCTATCGGAGGGCT
AACCCAAAGTTTACGTTTGGGCTGTCGACTGCACACACCTTGCAACGTTA
TGTCGCACGACAAGCCAACGACTGTGCATACTTCCGAGCAAGAACTAAGA
AAATGGGGAGCGTGTCGTACCAAAAGCCCATCAGCGGAGCTACTGAACAT
ACAACGTACTTACCTCCGGTGCGCTGCAGGTTTGGCATAGGTCTCACCGT
GCGCAACAGCACTGCCTCGCAGGGGATGCCCTGTGGCACTGGCGTGGCGT
AGCTCCCGGCCTGGCTGCCGCCGCTTGGGACGCCGTGCCTGAGTGATGTT
GTCTTGGTTCTACTCACCTTGCCTCCATGTGGAGCAGTAGTTTTATGCAG
TGCTCGAATTGTCCGCTGGCACTCCCGACTCTGACACCTTGCCTGCAGAC
GATAGTTTAAACCATAGACCCGATGGCAGTTTCAATATACGTAGGAACTG
GAACTGCCATGCAAAGGCGTCCAGTAGTCCAGAAACGCCAGCTGGAATGC
AGCCGGAGCAGCCAGGAGGACTGAACTCGAAGCTTTGCAAGCCGGTGACA
CCCAGTTGCACGCTGTAGTGGATGGCGAAGGGCCTGAGCAGGCTACTGCG
CGTGTATGGGGGGGGGGATGAGGGCCGGCGAGAAGCCGGAGATTCTGTGG
AAACCTCCGCCAAGGTTGATTCAGCTCTCTCTCAGCTCTCTCTCTCTCTC
TCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTTCTTTTC
TTACTGCAGTTGCAGTATGTAGTCAATCTGCATTACGTACGCTAGTCGAT
GCTGCCCGTACTCGAGTACGCACTCATCAACGAAGTGTAGTAGAGTGCTT
CCCAAGTTCCGATGCACTTTACTGCTCTTTACTACTGTGCTTAAGCCTCC
CTTGGCTTGCCAGACGTTGTCAGCTAAGGGATGTGCAGAAAGCAATGAAG
CATCGTTCCTGCCGGGCCACGTCGCCACGGCGCATTGCCGCAGCATCGTC
CAGTCGCCTGTCTCATGCTCGCCAGCGACTGCGGGTGTTTGTGTACCTGT
ACCCGTGCTCTACTGGATTAAGTACTTCCGGAAGTACCACATAACTCCTA
TTCCATGTCTGATGGCCTACTTTGATGTTACTTCCAGGAAGTAAGTATGT
CGAAGCATGTATTCACTTGTACCAACTTCGAAGTACTACATTAGTGACTG
ACGTTGAATCCCCCCAACCAATGGCACTATTGGCTCACTTTGGAATCACG
TCACGCCTTGATCGACGGCAGTCTTTCTCGACGCTTGGAGTAGTGTTCAG
CGCTGTCGCAGTGCTCTCGTGTGGTCCCTGCAGAGCACGACACCACGATA
CCACAAACCAATCTCTACGAATCGCCACGAACCGCACACACACCCATTTT
CCTTTTGTTCCTCTTTGTTTTTAGTTCTTTAATGTGATAATCACTAATAC
GAGAACACTCAATCTCACACACGTGCGATTGTACCTCATTGCACTTTTTA
CTTCGAAGTATATGAATCACCGCACACACCCCACACTGCACACACCGGCA
GGAAGTTGCCGAGGCTGCCTGCGTCGCCGCCTGCGCACTGGCCTGGGCGC
CGCCTGGCACACCTCCCAGCGCCGTCGGCCGCCACTGGCTGCGACCCCGC
CCGGCGGAGTGCTCCTCTGAGTACCCAGGCCGCAGGCCCGGCTCGGACAC
GGACTCGGACGCCTTTTCAAGTCGCCCAGAGCTCTGCGCTGATCCGAGTC
CTCAGGCCGACCTCTTCCGACTCATTCCTTCAGCGGCCGGCGGCGTCACG
GTATTGGACTGGCCCGGGCACGACTCGAGCGCTGCCCGAGTCACCCCGAG
GGGCGGCCCGGGTGCTCAGTCCGAGCTCCAGGTCCTCCGAGTCGCCGCGC
CACTGGCGACTCGGATTCGGACGGCGGCCGGCCCGGGCCCTGCCAGGGGC
CGGCCCGGGCCGAGCCTGAGGGACTCCCTCGCCGGGGTCGCCTTAAGGTT
CCCGGGGCCCGGCCACGGGAGGCTACGGGCGGCGTCCGTGGCCGCCGTGC
GAGCCCTGGATCTGGCGGGCCGGCAGCGCCCGCTGGCCACGGGGCATGCG
CTAGTGATGGAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2950143..2953956+

>mRNA_S-ischiensis_contig8.19661.1 ID=mRNA_S-ischiensis_contig8.19661.1|Name=mRNA_S-ischiensis_contig8.19661.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1974bp|location=Sequence derived from alignment at S-ischiensis_contig8:2950143..2953956+ (Schizocladia ischiensis KU_0333)
GGCGGTAGTAGCGACGGATTGGGGGACGTGGAGCTCCTTCAGGAGGCAGG
GCTCGCGACCGTGCGGAATCTGGCCGGGCGGTAGTAGCGACGGATTGGGG
GACGTGGAGCTCCTTCAGGAGGCAGGGCTCGCGACCGTGCGGAATCTGGC
CGGGAGCCATCCCCACAACAAGCAGAGGCTGGGCCGTGCTGGAGCCTGCC
AGGCGGTGGTCCACTGCTTACAAGCGTGCCGTTGCGGTGGCAGTCCGAGT
CGTGTCAGCCCGGGCATGCAAGTCGGGGAGCCTGAGCTCCTGCGGCGGCC
GGGGCCAGCAGACTCGGACAACGACGGCGATGATGATCGCTCGCCGGCCC
GGGCGCGCCGGGCCTGCGCGCGCAGGGAGCCATCCCCACAACAAGCAGAG
GCTGGGCCGTGCTGGAGCCTGCCAGGCGGTGGTCCACTGCTTACAAGCGT
GCCGTTGCGGTGGCAGTCCGAGTCGTGTCAGCCCGGGCATGCAAGTCGGG
GAGCCTGAGCTCCTGCGGCGGCCGGGGCCAGCAGACTCGGACAACGACGG
CGATGATGATCGCTCGCCGGCCCGGGCGCGCCGGGCCTGCGCGCGCAGGT
GCGCGCACGCCCTCTGGGCGGCCAAGACCCTGGCCATCGGCCACGGGGGG
AACCGGGAGGCCCTGGCGGCGGCCGGCATGGCGAAGGGCGTCAAAGGGGC
ACTGCTCGCCCACAGGGAGGACGCGGTGCGCGCACGCCCTCTGGGCGGCC
AAGACCCTGGCCATCGGCCACGGGGGGAACCGGGAGGCCCTGGCGGCGGC
CGGCATGGCGAAGGGCGTCAAAGGGGCACTGCTCGCCCACAGGGAGGACG
CGGAAGTTGCCGAGGCTGCCTGCGTCGCCGCCTGCGCACTGGCCTGGGCG
CCGCCTGGCACACCTCCCAGCGCCGTCGGCCGCCACTGGCTGCGACCCCG
CCCGGCGGAGTGCTCCTCTGAGTACCCAGGCCGCAGGCCCGGCTCGGACA
CGGACTCGGACGCCTTTTCAAGTCGCCCAGAGCTCTGCGCTGATCCGAGT
CCTCAGGCCGACCTCTTCCGACTCATTCCTTCAGCGGCCGGCGGCGTCAC
GGTATTGGACTGGCCCGGGCACGACTCGAGCGCTGCCCGAGTCACCCCGA
GGGGCGGCCCGGGTGCTCAGTCCGAGCTCCAGGTCCTCCGAGTCGCCGCG
CCACTGGCGACTCGGATTCGGACGGCGGCCGGCCCGGGCCCTGCCAGGGG
CCGGCCCGGGCCGAGCCTGAGGGACTCCCTCGCCGGGGTCGCCTTAAGGT
TCCCGGGGCCCGGCCACGGGAGGCTACGGGCGGCGTCCGTGGCCGCCGTG
CGAGCCCTGGATCTGGCGGGCCGGCAGCGCCCGCTGGCCACGGGGCATGC
GCTAGTGATGGAGGAAGTTGCCGAGGCTGCCTGCGTCGCCGCCTGCGCAC
TGGCCTGGGCGCCGCCTGGCACACCTCCCAGCGCCGTCGGCCGCCACTGG
CTGCGACCCCGCCCGGCGGAGTGCTCCTCTGAGTACCCAGGCCGCAGGCC
CGGCTCGGACACGGACTCGGACGCCTTTTCAAGTCGCCCAGAGCTCTGCG
CTGATCCGAGTCCTCAGGCCGACCTCTTCCGACTCATTCCTTCAGCGGCC
GGCGGCGTCACGGTATTGGACTGGCCCGGGCACGACTCGAGCGCTGCCCG
AGTCACCCCGAGGGGCGGCCCGGGTGCTCAGTCCGAGCTCCAGGTCCTCC
GAGTCGCCGCGCCACTGGCGACTCGGATTCGGACGGCGGCCGGCCCGGGC
CCTGCCAGGGGCCGGCCCGGGCCGAGCCTGAGGGACTCCCTCGCCGGGGT
CGCCTTAAGGTTCCCGGGGCCCGGCCACGGGAGGCTACGGGCGGCGTCCG
TGGCCGCCGTGCGAGCCCTGGATCTGGCGGGCCGGCAGCGCCCGCTGGCC
ACGGGGCATGCGCTAGTGATGGAG
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