mRNA_S-ischiensis_contig8.19658.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19658.1
Unique NamemRNA_S-ischiensis_contig8.19658.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2936668..2941193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1003
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19658.1prot_S-ischiensis_contig8.19658.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2936668..2940810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.0689008-CDS-S-ischiensis_contig8:2936667..29367321622817262.0689008-CDS-S-ischiensis_contig8:2936667..2936732Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2936668..2936732 +
1695740978.2405899-CDS-S-ischiensis_contig8:2936667..29367321695740978.2405899-CDS-S-ischiensis_contig8:2936667..2936732Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2936668..2936732 +
1622817262.084239-CDS-S-ischiensis_contig8:2938183..29383281622817262.084239-CDS-S-ischiensis_contig8:2938183..2938328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2938184..2938328 +
1695740978.2508805-CDS-S-ischiensis_contig8:2938183..29383281695740978.2508805-CDS-S-ischiensis_contig8:2938183..2938328Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2938184..2938328 +
1622817262.0969234-CDS-S-ischiensis_contig8:2939236..29394151622817262.0969234-CDS-S-ischiensis_contig8:2939236..2939415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2939237..2939415 +
1695740978.2654498-CDS-S-ischiensis_contig8:2939236..29394151695740978.2654498-CDS-S-ischiensis_contig8:2939236..2939415Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2939237..2939415 +
1622817262.1107178-CDS-S-ischiensis_contig8:2940581..29408101622817262.1107178-CDS-S-ischiensis_contig8:2940581..2940810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2940582..2940810 +
1695740978.2761474-CDS-S-ischiensis_contig8:2940581..29408101695740978.2761474-CDS-S-ischiensis_contig8:2940581..2940810Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2940582..2940810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817262.1261904-UTR-S-ischiensis_contig8:2940810..29411931622817262.1261904-UTR-S-ischiensis_contig8:2940810..2941193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2940811..2941193 +
1695740978.2853088-UTR-S-ischiensis_contig8:2940810..29411931695740978.2853088-UTR-S-ischiensis_contig8:2940810..2941193Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2940811..2941193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19658.1

>prot_S-ischiensis_contig8.19658.1 ID=prot_S-ischiensis_contig8.19658.1|Name=mRNA_S-ischiensis_contig8.19658.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=206bp
DALGEACRALAGLSRDPAGRERCGEAGACRAVVRAAAASLPRVSSVGEAC
LEAIAELATECPDNAARLVHARVTGVVLSALRELPNNGGVQLQGLRCVAL
LARGADGYASGLGRAQACRVVLLCLRTALGRNASPHVLEASLAATCALAR
GDEANRRELARSGACREVLHAMEASPTFFCCSRAGLAIHIASHHITLVSR
RPQRV*
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mRNA from alignment at S-ischiensis_contig8:2936668..2941193+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19658.1 ID=mRNA_S-ischiensis_contig8.19658.1|Name=mRNA_S-ischiensis_contig8.19658.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4526bp|location=Sequence derived from alignment at S-ischiensis_contig8:2936668..2941193+ (Schizocladia ischiensis KU_0333)
GACGCCCTTGGGGAGGCGTGTCGGGCGCTGGCCGGGCTCAGCAGGGACCC
GGCCGGCCGAGAGAGGTTAGTTGCAAGAAGGCAAACAAGCGAGTGGGAAA
GAAGAGGTGTTCCCTGCATACGCCCGTTCAGGGGCCCACCCCCGGAATCC
CTTCCTTTCGCTCGCCTTCAGATGTTCTGTGCTGCACTGAAGTTTGTTGC
CAGATGGCAACAAGCAAGTAGAGTGGGAGTGAAGATATGTTCCTGCCTAC
GCGAGTTCGGGGGGGGCCACCCCCGGAAGCCCCTCATTTCACACTCGGCT
TCACTCGCAGAGCACGTGTAAGTAGAGCAGAAAAACGAAGGAAGCAAGGG
GGGAAGAGGGCGGGAGAGGATGAGTAGTGGAGGAGCGGAGGGCAGGAGAG
CATAGCAGGGGAGGAGTTAGATTATGTTTTGTTTCTGAGAGCTGCGAATT
GGGCCGGGTTGTAACCGACGACAACCGGCAATCGATCGGCCGACGGTCCG
GTTCTTCAGCTTTTGTGCTCCTCCAATTTCATGCGTAGTCTAATCAGTAC
CTGCCTGTCAACACCTGCCCATGGTAGGCGTTGCGGTCAACAAACCGAAA
AAAAAAAAAAAAAAAAAAAAAGAGCGCCCAAAAGAAAACCGAATCGGTCG
CCAGCTCGGGGGCCGTCAAACATTGATCTGGCCTGCCGGTTCACAGCTCA
CATTGTACGGTGCTTTGTGCAAATGCACGAGTGGTTTGTGTCTCTGGATC
TAGGGCCTTCAATCACGACACTGCAGCGGAGTAGCCAAACAGTTCAGGCT
TTCATGCTACAGTGCAGTACATGCTTTGTACTTCAAATTACTATAGCATA
TACTGAAGGGCTGGACACCGAAAGTTCTACAGCCGTGTCAGTCTTTGAAA
CTACATACTTGGTACATTGTACTTAGAAGTACTTCGGAGTACTACTACTA
GTAGTACAGTACTTATATACTGAAGCGCTGGACACCGAAAGTATTGCAGT
ATAAGCCTTTCAAGCTACTTGCTTTGTAATCTGTACTGAAGTGCTGTACG
CCAAAAAAGTGATACAGTATCAGTCTTTCGATTTACTTGCTATATACTGA
AGTGCTGGACGCCAAAAGTTTTGAGGCACGAGGCTTTCAAACTGCATGCT
TTGCACTACATACTGAAGTGGTGGAGACCGAAAGTACTACGAGTGCTTCG
AAGTACAGTATAAGCCTTTCAAACGACGAGTACCTACTGCAGTTCGAAGT
ACTATGTACTGAAGTGCTGGACACCAAAAGTACTACAGCATAAGGCTTTA
TACCTACAGTACTTGCTTTGTACTTCGAAGTACACCGAAGAATTAGTAGA
GCACAGTATCAGTCTTTCAAACTACTCACTCTGTACTATACTCCGGCCCC
ACGCCTCGCTCGATACCCTTCCCACCGAGCTACTAGCAAACCCGAGCAGG
AACTGCGTGAAACCCTTCCAAAGCAAACACAACCAGAACCGTGCTGGAAC
CTTGGCCACCACACAGGTGCGGAGAGGCGGGGGCGTGCCGAGCGGTCGTT
CGCGCGGCGGCGGCGTCCCTCCCCAGGGTTTCGAGCGTCGGGGAGGCGTG
CCTGGAGGCCATCGCGGAGCTGGCCACGGAGTGTCCTGACAACGCCGCCC
GCTTGGTGCACGTGAGTGAGCTCGAAACTTGGGCAGTGTGTTGAAGGATA
GTACAGATACAGTGCAGTACAGTACATGTGCAGCACAGCACAGTATACAG
TACAGCACAGTACAGTACAGTGCAGGACAATACAGTACAGTATCCTACAG
ATACAGCACAGTGCAGCACATATGGGTACTTTGTAGTGCTAAAAAAGAAA
GTCACCACCCGCCTCGCCCCGGCCGCCCCCCGCAAGGCGTCCGCGGGTCC
ACTGCGAGATTCGCCTGGGTAGGAGGCGGGCGTCCGCTCGCAGCCTGAAC
CTGAGCTCTCTGACCCTCATACCCGACCCTAGCCCTATCCTTGGCCCTGC
GTACATGCCGGTTTCCCATTGGCCCCACGCCAATTGCCTCGGCTGTCCCG
CCCACCCACCCGCCTGAATGATGACGGGGGAGGAAAAACAAAACACACAA
TGGACCGAGAGCGTTTGCAAGCTGGGAAGCTAATGCTCGGAGCAGTAACA
CGTATATACTAAGTTAAGTACTGATTCTTCGGAGTCAGTCATCGTCGGAT
GATACTCCAGCAGTCTTAGCAGCCGTCAATTTCTACACATACTTCCGTAT
CTACTACAGTACTACAGTACAGCAGGAGTACTTCGCAGTACTTTGAGTAT
ATGTACACACGTTATGCTTGCCGTGGTCCCGAGATCGTTGACCACATTCC
GCTGTCGACGGAGCAATCTGTGTTGTTCCACCCGAGTACATTTGCATACG
CACTGTACCTAATATCGTAAAGCAACTGTGAGAGCTGCGACGGGCGGCGC
GCGCAGTGTTAACATCGACCCACGCGGCTGGGCTCGGTGAACCGAAAAAC
GAAACGAGACCCCTTGCCCGCCGCGTCCGAAACATTGGGACGCCCGTTCG
TTCGACCGTTCGCCCACAGGCTCGGGTGACCGGCGTGGTGCTGTCCGCGC
TGCGGGAGTTGCCAAACAACGGGGGCGTCCAGCTGCAGGGGCTGCGGTGC
GTGGCCCTCCTTGCCAGGGGGGCAGACGGCTACGCGTCTGGCCTGGGGAG
GGCCCAAGCCTGTCGCGTCGTCCTTCTCTGCCTGCGTACAGCCCTAGGGT
GAGCGAAGGGACCGGGAAAGCTGTTCAGAAACGTGTGAGGTTTTGAGGAC
CGCGGGACACTCTCCATGTGGTGTGGTGTGATGTGATGCCATGTCATGTG
ATGTGAGGTCAAACTAAAGTGCGTTAGAGTGCACGCTACATCGCATCACA
TTGCTGCGAACAAAAGCGATGCAATGGATGTGATGGGCTCTGTCCAACTG
CTGAGTTGTACGCCAGAGGACCCGTCACATCCCATCCCGTCCCATCACAG
CACGTTGCGTCACATCACATCACATTTGCGCCACATCACATTCCATCACA
TCACGTTTCATCACGTCCCGCCCCATCCCATCACGGCACATTGCATCACA
CCACATCACATCACATCGGATCGCTTCACATTTCATCACATCACATCACA
TCATATCACATTGCATCACGTCACGTCACATCGCATCACATCACATCACA
TGCATTGGGGTCCCATCGCCCTCAGAGGGGCAACCGCCTTGCAGGTCGGC
CTTGGAGCACTCTAGCACCCGGTAGTTTGGCATAGCATACCACAACATCA
CATCGCATCACATCACGTCACATCACATCACATCACATCACACCACATCA
GAGACAGTAAACACACGCGAGGTGCAGGCCACGCCAGAAAGGCTCTCAAC
AGCGGCTTATCTTTTTTGGTAACCCACGGGAGGACAGCACGGGGAGGCCC
TGGCCCTGCTCCGTCTCGGCCGAGGCGCCATAGGGGTCAATGGTCTCGGG
ACTGCGGCAAGCCCAGCTTGAGCACATACCCGTATATACGAGTATACATA
TATATGCGAAGTACATATATGTACTCACGTTGTGCTTGCCGTAGTCCCGA
GACCATTGACCACACGCCGTTGCTGACGGGGCATATATGTACTTCCAAAT
ACACAGTACAAAAAATAACTAAAGTCACACTCGAGTAGTCTCCTAACTAC
AGCACTTTTGCTATTCGAAACCCGTTACCCTTAACTACTTGGATGCTCTC
AAACAAATGGTCTCGGGACTAGGGCAAGCACAGCGCGGGCACATACATAC
TCTACGAGTACATACACTCATATACACAGGACGGCACTGCAGTTCAGGGC
ACAGCACCTACTGCCCTACTTGTGCCCGTCTCCTGGCTCACACACAACCA
TCCCGGGGCGGCAGGCGCAACGCGAGCCCACACGTCCTGGAGGCAAGCCT
AGCGGCCACATGTGCGCTGGCCCGCGGAGACGAGGCCAACCGCAGGGAGC
TGGCAAGAAGCGGAGCCTGCCGGGAGGTTCTGCACGCAATGGAGGCAAGC
CCCACGTTCTTTTGCTGCTCCCGGGCAGGGTTGGCAATTCACATCGCATC
GCATCACATCACATTAGTGTCCCGGCGCCCTCAAAGGGTTTAACGGAGCG
GCTCATGACATGTTCCCCAGAGAAACCGGTGCCGACAATGCGTTGTGATG
TGATGTGATGTGATGTGTCCTCTGATGTGCTGTGCTGTGAAACCGCGTCA
CACACATCACATCACAACACGTGACACTATCCGCATCAGCGTCCCGTGTT
CCTCAAAACGGCAAACAAAGTGGATCGAGACGCATTCTTCGAACCAAACT
GAAGATAAGAGACAACTCGCCGCTTGTCTGCCACTCAAATAAGAAATGGC
CCGCCTACTCACATATCGGTAGTACCACAGGCCTGCGCCACAGGCGCAGT
CTTCGCTTGTTCAAGAATCACAGCCGGCGACCTGAGCTAAGCCCGACCAG
TTTCTCCCTCAAAGAAACCAACGCAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2936668..2941193+

>mRNA_S-ischiensis_contig8.19658.1 ID=mRNA_S-ischiensis_contig8.19658.1|Name=mRNA_S-ischiensis_contig8.19658.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1236bp|location=Sequence derived from alignment at S-ischiensis_contig8:2936668..2941193+ (Schizocladia ischiensis KU_0333)
GACGCCCTTGGGGAGGCGTGTCGGGCGCTGGCCGGGCTCAGCAGGGACCC
GGCCGGCCGAGAGAGGACGCCCTTGGGGAGGCGTGTCGGGCGCTGGCCGG
GCTCAGCAGGGACCCGGCCGGCCGAGAGAGGTGCGGAGAGGCGGGGGCGT
GCCGAGCGGTCGTTCGCGCGGCGGCGGCGTCCCTCCCCAGGGTTTCGAGC
GTCGGGGAGGCGTGCCTGGAGGCCATCGCGGAGCTGGCCACGGAGTGTCC
TGACAACGCCGCCCGCTTGGTGCACGTGCGGAGAGGCGGGGGCGTGCCGA
GCGGTCGTTCGCGCGGCGGCGGCGTCCCTCCCCAGGGTTTCGAGCGTCGG
GGAGGCGTGCCTGGAGGCCATCGCGGAGCTGGCCACGGAGTGTCCTGACA
ACGCCGCCCGCTTGGTGCACGCTCGGGTGACCGGCGTGGTGCTGTCCGCG
CTGCGGGAGTTGCCAAACAACGGGGGCGTCCAGCTGCAGGGGCTGCGGTG
CGTGGCCCTCCTTGCCAGGGGGGCAGACGGCTACGCGTCTGGCCTGGGGA
GGGCCCAAGCCTGTCGCGTCGTCCTTCTCTGCCTGCGTACAGCCCTAGGG
CTCGGGTGACCGGCGTGGTGCTGTCCGCGCTGCGGGAGTTGCCAAACAAC
GGGGGCGTCCAGCTGCAGGGGCTGCGGTGCGTGGCCCTCCTTGCCAGGGG
GGCAGACGGCTACGCGTCTGGCCTGGGGAGGGCCCAAGCCTGTCGCGTCG
TCCTTCTCTGCCTGCGTACAGCCCTAGGGCGCAACGCGAGCCCACACGTC
CTGGAGGCAAGCCTAGCGGCCACATGTGCGCTGGCCCGCGGAGACGAGGC
CAACCGCAGGGAGCTGGCAAGAAGCGGAGCCTGCCGGGAGGTTCTGCACG
CAATGGAGGCAAGCCCCACGTTCTTTTGCTGCTCCCGGGCAGGGTTGGCA
ATTCACATCGCATCGCATCACATCACATTAGTGTCCCGGCGCCCTCAAAG
GGTTTAAGCGCAACGCGAGCCCACACGTCCTGGAGGCAAGCCTAGCGGCC
ACATGTGCGCTGGCCCGCGGAGACGAGGCCAACCGCAGGGAGCTGGCAAG
AAGCGGAGCCTGCCGGGAGGTTCTGCACGCAATGGAGGCAAGCCCCACGT
TCTTTTGCTGCTCCCGGGCAGGGTTGGCAATTCACATCGCATCGCATCAC
ATCACATTAGTGTCCCGGCGCCCTCAAAGGGTTTAA
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