mRNA_S-ischiensis_contig8.19655.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19655.1
Unique NamemRNA_S-ischiensis_contig8.19655.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A835Z8P0_9STRA (Aquaporin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8P0_9STRA)

HSP 1 Score: 342 bits (877), Expect = 2.720e-112
Identity = 157/211 (74.41%), Postives = 179/211 (84.83%), Query Frame = 2 
Query:  104 MSQKLVGVFLQECFGSFLLLVLLFPFGSFLGDTWAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSYVEMGGPVLGDLDVASGSLWEFGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSKTGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPK 736
            MS K+VGVFLQECF SFL+LVLLFPFGSFLGDTW GW  HFFCVMLHDWITGGSQVNP+VS+AT  YGWN   + AVRI GQL+GG AAFP +++VLP YV+MGGP+L    VA G  WEFGLTF LLI+VY + TQ+GLPAQRP+IAGGIR LIYYG KTGPAMNPMIA +WA+YAA  SINMDHFLVYW+++TAG +AATL+WK VEPK
Sbjct:    1 MSAKMVGVFLQECFASFLMLVLLFPFGSFLGDTWMGWTAHFFCVMLHDWITGGSQVNPAVSIATTLYGWNTPASAAVRIAGQLVGGLAAFPVVARVLPPYVKMGGPMLNTTSVADGCAWEFGLTFALLILVYVAATQIGLPAQRPIIAGGIRTLIYYGGKTGPAMNPMIALSWAYYAAPASINMDHFLVYWVSSTAGAIAATLLWKAVEPK 211
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: D7G8A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A1_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 2.070e-82
Identity = 127/221 (57.47%), Postives = 162/221 (73.30%), Query Frame = 2 
Query:  107 SQKLVGVFLQECFGSFLLLVLLFPFGSFLGDTWAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSYV--EMGGPVLG-DLDVASGSLWEFGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYY----GSKTGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDK 748
            SQ+ +G+FLQE FGSF LL+++FPF SFLGDTW+ W+QHFF VM+ D+  GG+QVNP++SV T+FYGWND +++ VRIVGQ++GG  AFP ++K+LPSY    MGGP L        G  WEFG TF L+++VY + TQ+GLP QRPVIA GIRALI+     G KTGPAMNPMIA AWA Y    +++   FLVYW+A  A  VA TL+WK +EPK + K
Sbjct:    3 SQRTLGIFLQETFGSFALLMMVFPFNSFLGDTWSAWIQHFFSVMITDYTNGGAQVNPAMSVGTFFYGWNDQSSLVVRIVGQMVGGFYAFPIMAKLLPSYATSSMGGPTLAAGASTGQGMAWEFGSTFALILIVYVAATQIGLPGQRPVIATGIRALIHLSAVKGGKTGPAMNPMIATAWAVYDKSVTMDQQWFLVYWVAPCAAAVAGTLLWKALEPKPKAK 223
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: K8YV92_NANGC (Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV92_NANGC)

HSP 1 Score: 209 bits (531), Expect = 1.620e-60
Identity = 109/225 (48.44%), Postives = 146/225 (64.89%), Query Frame = 2 
Query:   86 GFRITAMSQKLVGVFLQECFGSFLLLVLLFPFGSFLGDTWAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSYVEMGGPVLGD-LDVASGSLWEFGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSK-TGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDKKK 754
            G +     ++LVG  +QE FG+ L+ ++L+PF   LGDTW  WV HFF VML D ++GGSQVNPSVSVA + +G   F    VRI+ QL  G  A+P + K+ PSYV +GGP L D +   +G+L EF LTF LL ++Y ++T +G P QRP+IA GIR LI  G+  TGPAMNPMIAF WA  +       DH+LVYW+A T G V AT+++   +    D++K
Sbjct:    2 GSQTVESPRQLVGAAIQEFFGALLMFLVLWPFVGVLGDTWTAWVAHFFFVMLCDIVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGVVAYPLLQKLSPSYVGVGGPCLQDGVSTTTGALAEFTLTFALLTLIYLAITIIGAPGQRPIIAAGIRCLIVAGTPYTGPAMNPMIAFGWAVQSDAYK-TFDHYLVYWIAPTVGAVLATVLFAVFQASFLDERK 225
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A7S2W9D3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W9D3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.330e-29
Identity = 77/213 (36.15%), Postives = 119/213 (55.87%), Query Frame = 2 
Query:  119 VGVFLQECFGSFLLLVLLFPFGSFLGDT--WAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSY-VEMGGPVLG-DLDVASGSLWEFGLTFCLLIVVYA-SVTQLG--LPAQRPVIAGGIRALIYYGSKTGPAMNPMIAFAWAFYAARESI---NMDHFLVYWLAATAGGVAATLVWKTV 727
            +G FL+E  G  +++V  F  G FLG    +  W+ H   V++ D++ GG QVNP+V++A + +       + + I  Q+ GG  AFP +  +   Y   +GGP +G ++ VA G   E    F L++ +YA + T +G   P ++P+IA  IRA I+Y   TGPAMNP +   WAFY ++ +    +  H+ +YW AA AG   ATL+W  V
Sbjct:   75 LGEFLKEFLGMIVMIVCTFTPGPFLGSFKGYEEWLAHVAGVIVADYLCGGPQVNPAVTIAMFVWRKISGYQVLLYIAAQMAGGIVAFPLLQSISTPYKAVIGGPEVGPEVTVAQGMFNEGVAMFLLMLGIYAFATTAIGNVYPVKQPLIAAVIRACIFYFGTTGPAMNPALGTTWAFYKSQSTAFPTDAGHYAIYWGAAMAGAAVATLLWSVV 287
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A7S1VVQ9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVQ9_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.410e-23
Identity = 83/248 (33.47%), Postives = 114/248 (45.97%), Query Frame = 2 
Query:  128 FLQECFGSFLLLVLLFPFGSFLG--DTWAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFP---AISKVLPSYVEMGGPVLGDLD----VASGSLWEFGLTFCLLIVVYASVTQLGLPA-----QRPVIAGGIRALIYYGSKTGPAMNPMIAFAWAFYAARESI---NMDHFLVYWLAATAGGVAATLVW--------------------KTVEPKEEDKKKTA 760
            F  E  GS L++   F  G ++G       WV HF  V+  D+  GG  VNP+V+++ +  G   +    VR+  QL GG  AFP   AIS  L  +   GGP     D         + EF  TF L+I++Y     L         ++ + A GIRALI      GPAMNPM+A AWA +    S    +MDH++VYWLA     V A+L W                    K    +++DKKKT+
Sbjct:   54 FRHEFVGSLLMIAFTFSAGKWIGKESVNVAWVSHFLGVIAADYFGGGPHVNPAVTLSMWSLGKCSYTEGYVRVAAQLGGGLVAFPIFHAISVAL-DWEPFGGPEFNMDDDEEHAVEAFMSEFCATFLLMILIYLVNWVLNFGTFHYWIKQSLTALGIRALIEIFPTAGPAMNPMLATAWATFGTGNSQFPEDMDHYIVYWLAPGLAAVLASLCWALYDGGPFFGFTLPIGPFKKKPAPVEKDDKKKTS 300
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A7S3LB05_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LB05_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.400e-18
Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 2 
Query:  113 KLVGVFLQECFGSFLLLVLLFPFGSFLGDT--WAGWVQHFFCVMLHDWITGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSY--VEMGGPV--LGDLDVA-SGSLWEFGLTFCLLIVVYASVTQLGLPAQRPVI-----AGGIRALIYYGSKTGPAMNPMIAFAWAFYAARESINMD----HFLVYWLAATAGGVAATLVW 718
            + V  F QE  G+ L+++  F  G ++G    +  W  H   V+  D+I GG QVNP+V+V  +  G   +    VRI  QL GG  AFP    V  +Y     GGP   +GD + A    L EF  T  L+  ++    +        +I     A  IRALI +    GPAMNPM+A +WA +   E  N      H+ VYW++     V A  ++
Sbjct:   37 RYVQAFRQEFVGTLLMVMCTFSAGKWVGKASMYQAWGAHALGVISADYIGGGPQVNPAVTVGMWSLGKVTYTEGFVRIAAQLGGGLIAFPLFHAVAEAYDLEPFGGPEFDIGDKNAAIEAFLSEFCATALLMWAIFLLNWEFHFGKYHYIIKQSLTAVAIRALIEFFPTAGPAMNPMLATSWAVFGVGEKFNYPDDFMHYFVYWISPCMASVFACALY 254
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: SIP11_ARATH (Aquaporin SIP1-1 n=8 Tax=Brassicaceae TaxID=3700 RepID=SIP11_ARATH)

HSP 1 Score: 90.9 bits (224), Expect = 5.780e-17
Identity = 68/204 (33.33%), Postives = 107/204 (52.45%), Query Frame = 2 
Query:  182 GSFLGDTWAGWV----QHFFCVMLHDWITGGSQVNPSVSVATYFYG--WNDFNTMAVRIVGQLIGGTAAFPAISKVLPS-YVEM-GGPVLGDLDVASGSLWE----FGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSK-TGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDKKK 754
            G F   TWA  V      F  V +   I G +  NP+ S A Y  G   +   ++A+R+  Q IG      AI + +P  Y  M GGP L  +DV +G++ E    FG+TF +L+++     +  L A+  ++A    + +  GSK TGPAMNP IAF WA+  +  +   DH  VYW+++  G ++A L+++++ P    +KK
Sbjct:   36 GDFQAITWAPLVILTSLIFVYVSIFTVIFGSASFNPTGSAAFYVAGVPGDTLFSLAIRLPAQAIGAAGGALAIMEFIPEKYKHMIGGPSL-QVDVHTGAIAETILSFGITFAVLLIILRGPRR--LLAKTFLLALATISFVVAGSKYTGPAMNPAIAFGWAYMYSSHN-TWDHIYVYWISSFVGALSAALLFRSIFPPPRPQKK 235
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A565B513_9BRAS (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A565B513_9BRAS)

HSP 1 Score: 89.0 bits (219), Expect = 2.320e-16
Identity = 57/177 (32.20%), Postives = 100/177 (56.50%), Query Frame = 2 
Query:  251 ITGGSQVNPSVSVATYFYG--WNDFNTMAVRIVGQLIGGTAAFPAISKVLPSYVE--MGGPVLGDLDVASGSLWE----FGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSK-TGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDKKK 754
            + GG+  NP+ + A Y  G   +   ++A+R+  Q  G      AI +++P   +  + GP L  +DV +G++ E    FG+TF +++++        L A+  ++A    +L+  GSK TGPAMNP IAF WA+ ++  +   DHF VYW+++  G ++A LV++++ P    +KK
Sbjct:   55 LLGGASFNPTGNAAFYAAGIPGDTLFSLAIRLPAQAAGAAGGALAIMELIPEKYKHTISGPSL-QVDVHTGAIAETLLSFGITFAVMLIILRGPRM--LLAKTFLLAITTVSLVIAGSKYTGPAMNPAIAFGWAYMSSSHN-TWDHFYVYWISSFVGALSAALVFRSIFPPPRPQKK 227
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: A0A0D3CMW0_BRAOL (Uncharacterized protein n=8 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CMW0_BRAOL)

HSP 1 Score: 86.7 bits (213), Expect = 1.630e-15
Identity = 64/203 (31.53%), Postives = 104/203 (51.23%), Query Frame = 2 
Query:  185 SFLGDTWAGWVQHFFCVMLH----DWITGGSQVNPSVSVATYFYG--WNDFNTMAVRIVGQLIGGTAAFPAISKVLPS-YVEM-GGPVLGDLDVASGSLWE----FGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSK-TGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDKKK 754
             F G  WA      F + ++      + G +  NP+ + A Y  G   +   T+A+R+  Q  G      AI + +P  Y  M  GP L  +DV +G++ E    FG+TF  L+++     +  L A+  ++A      +  GSK TGPAMNP IAF WA+  +  +   DHF VYW+++  G ++A LV++T+ P  + ++K
Sbjct:   36 GFQGIAWAPLAITTFLIFVYVSIFTVVFGSASFNPTGNAAFYAAGVPGDTLFTLAIRLPAQAAGAAGGALAIMEFIPEKYKHMISGPSL-QVDVHTGAIAETILSFGITFAALLIIIRGPRR--LLAKTFLLALATICFVVAGSKYTGPAMNPAIAFGWAYMYSSHN-TWDHFYVYWISSFVGALSAALVFRTIFPPHKPQQK 234
[Close]
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Match: UPI00053C4BA3 (aquaporin SIP1-1 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C4BA3)

HSP 1 Score: 83.2 bits (204), Expect = 2.670e-14
Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 2 
Query:  251 ITGGSQVNPSVSVATYFYG--WNDFNTMAVRIVGQLIGGTAAFPAISKVLPS-YVEM-GGPVLGDLDVASGSLWE----FGLTFCLLIVVYASVTQLGLPAQRPVIAGGIRALIYYGSK-TGPAMNPMIAFAWAF-YAARESINMDHFLVYWLAATAGGVAATLVWKTVEPKEEDKKK 754
            + GG+  NP+ + A Y  G   +   +MA+R   Q  G      AI +V+P  Y  M GGP L  +D+ +G++ E    F +TF +L+++     +  L A+  ++A    +L+  GSK TGPAMNP IAF WA+ Y++  S   DHF VYW+++  G + A L ++   P    +KK
Sbjct:   65 LLGGASFNPTGNAAFYTAGVPGDSLFSMALRFPAQAAGAVGGAMAILEVVPDKYKHMIGGPAL-RVDLHTGAIAEGILSFLITFSVLLIILRGPRR--LLAKTFLLAIVTVSLVIAGSKYTGPAMNPAIAFGWAYIYSSHNS--WDHFYVYWISSFVGAILAALAFRVFFPPPRPQKK 237
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A835Z8P0_9STRA2.720e-11274.41Aquaporin-like protein n=1 Tax=Tribonema minus Tax... [more]
D7G8A1_ECTSI2.070e-8257.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YV92_NANGC1.620e-6048.44Aquaporin sip1-2 n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7S2W9D3_9STRA2.330e-2936.15Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S1VVQ9_9STRA5.410e-2333.47Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3LB05_9STRA3.400e-1832.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
SIP11_ARATH5.780e-1733.33Aquaporin SIP1-1 n=8 Tax=Brassicaceae TaxID=3700 R... [more]
A0A565B513_9BRAS2.320e-1632.20Uncharacterized protein n=2 Tax=Arabis TaxID=50451... [more]
A0A0D3CMW0_BRAOL1.630e-1531.53Uncharacterized protein n=8 Tax=Brassiceae TaxID=9... [more]
UPI00053C4BA32.670e-1434.83aquaporin SIP1-1 n=1 Tax=Tarenaya hassleriana TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2918351..2926212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog159749.K0SNG6
EggNOG free text desc.Belongs to the MIP aquaporin (TC 1.A.8) family
EggNOG OGs2CGDK@1,2SA3Q@2759,2XANQ@2836
COG Functional cat.P
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMajor intrinsic protein
Ec32 orthologEc-19_003710.1
Exons6
Model size1654
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19655.1prot_S-ischiensis_contig8.19655.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2918454..2925321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.6093752-UTR-S-ischiensis_contig8:2918350..29184531622817295.6093752-UTR-S-ischiensis_contig8:2918350..2918453Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2918351..2918453 +
1695741004.1870108-UTR-S-ischiensis_contig8:2918350..29184531695741004.1870108-UTR-S-ischiensis_contig8:2918350..2918453Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2918351..2918453 +
1622817295.7019768-UTR-S-ischiensis_contig8:2925321..29262121622817295.7019768-UTR-S-ischiensis_contig8:2925321..2926212Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2925322..2926212 +
1695741004.2930386-UTR-S-ischiensis_contig8:2925321..29262121695741004.2930386-UTR-S-ischiensis_contig8:2925321..2926212Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2925322..2926212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.6215773-CDS-S-ischiensis_contig8:2918453..29184861622817295.6215773-CDS-S-ischiensis_contig8:2918453..2918486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2918454..2918486 +
1695741004.2013106-CDS-S-ischiensis_contig8:2918453..29184861695741004.2013106-CDS-S-ischiensis_contig8:2918453..2918486Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2918454..2918486 +
1622817295.63513-CDS-S-ischiensis_contig8:2921862..29219671622817295.63513-CDS-S-ischiensis_contig8:2921862..2921967Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2921863..2921967 +
1695741004.2152543-CDS-S-ischiensis_contig8:2921862..29219671695741004.2152543-CDS-S-ischiensis_contig8:2921862..2921967Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2921863..2921967 +
1622817295.6488018-CDS-S-ischiensis_contig8:2922592..29226791622817295.6488018-CDS-S-ischiensis_contig8:2922592..2922679Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2922593..2922679 +
1695741004.2294266-CDS-S-ischiensis_contig8:2922592..29226791695741004.2294266-CDS-S-ischiensis_contig8:2922592..2922679Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2922593..2922679 +
1622817295.6696498-CDS-S-ischiensis_contig8:2922929..29231151622817295.6696498-CDS-S-ischiensis_contig8:2922929..2923115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2922930..2923115 +
1695741004.2405868-CDS-S-ischiensis_contig8:2922929..29231151695741004.2405868-CDS-S-ischiensis_contig8:2922929..2923115Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2922930..2923115 +
1622817295.6798763-CDS-S-ischiensis_contig8:2924407..29245151622817295.6798763-CDS-S-ischiensis_contig8:2924407..2924515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2924408..2924515 +
1695741004.2517939-CDS-S-ischiensis_contig8:2924407..29245151695741004.2517939-CDS-S-ischiensis_contig8:2924407..2924515Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2924408..2924515 +
1622817295.6904585-CDS-S-ischiensis_contig8:2925180..29253211622817295.6904585-CDS-S-ischiensis_contig8:2925180..2925321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2925181..2925321 +
1695741004.2756903-CDS-S-ischiensis_contig8:2925180..29253211695741004.2756903-CDS-S-ischiensis_contig8:2925180..2925321Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2925181..2925321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19655.1

>prot_S-ischiensis_contig8.19655.1 ID=prot_S-ischiensis_contig8.19655.1|Name=mRNA_S-ischiensis_contig8.19655.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=220bp
MSQKLVGVFLQECFGSFLLLVLLFPFGSFLGDTWAGWVQHFFCVMLHDWI
TGGSQVNPSVSVATYFYGWNDFNTMAVRIVGQLIGGTAAFPAISKVLPSY
VEMGGPVLGDLDVASGSLWEFGLTFCLLIVVYASVTQLGLPAQRPVIAGG
IRALIYYGSKTGPAMNPMIAFAWAFYAARESINMDHFLVYWLAATAGGVA
ATLVWKTVEPKEEDKKKTA*
back to top

mRNA from alignment at S-ischiensis_contig8:2918351..2926212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19655.1 ID=mRNA_S-ischiensis_contig8.19655.1|Name=mRNA_S-ischiensis_contig8.19655.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7862bp|location=Sequence derived from alignment at S-ischiensis_contig8:2918351..2926212+ (Schizocladia ischiensis KU_0333)
AACGAGTTAAGGTGCGGTGGTGTCGTTGATTCGGGTGAGGGGGGTAAGCA
AGCCCTTTGGGACGGGGGAACGAGCCTCTACGCAGGGGTTCAGGATTACA
GCCATGTCTCAAAAGCTTGTGGGCGTGTTCCTGCAGGTGAGAAAGCACGC
GGCGAGAGCTCGGCGCGACATCGCGCCCCGCTTGAAGGAAACGGTCCTGC
AGCCGCGCGACGAGACTCTGGAGCTCGACACCGCTGTTGACATAATATAA
AATGTTCCAAACGGTCACGGGGGTATTCATCCCGCCTTCCTTGGACAGGT
GTCGTACGTGGCACGCTTGCCGGGTTGCACGTAGCAAGGGGGTACCAAGA
GCTGTGGCCTAACGTTTCTCATCCCGCCTTCCCCAGTAGTGGTGCACTAA
CCTACGCCACTCTCGGCCAATTATTTGGGCTAGCGGCTTTGGGCCCCTGG
CCTGGAGGATGTTTGGAGGTGCAAGTGCTCCATACAGATGCTTGCCACGA
ACCAGGACACTGTTGGAGTAGTATGACGTACTCGAGTACTCGGATACTCG
ATTAGCCTCCGCCTTAACAGGTGGTGGGGCAGTTGGACTGTGCTATGGTA
GCCACAATACTGCGTGTATGCTCAGTGAGGACAGGGAACCCCGGCCTGTA
TAAGCTGCCCTGCACATACACAGTGCAGTAGTGCCTGATACTGTATATGC
ACGTACTCCTGAATGAAGTACTTTACAGTCATTAAGCCTCCCTCGGCTCA
CGAGCCGTTATGGGCCCATGCATGTAAAACACGGATTGAACTGCATTAGC
ACTACAATCTATCACGTAGAGCGGTACCACCAACCCCGTACCACCAACTG
TGGACATCTACTGCTGAGTACCGTGCCAGTTGCACCGCGCTTCTAATTCA
GCATGGTACCACCAACGGCAAAGAGCTATATAATGGTAGGCATCATGACT
GCTCCGCACGGGAACCGACGGTGTTATGGCTACTTACCCGGCATGAGGCT
GTTAGGGTCAGGGTGTCAAGCCTTAGGTACCCTGTGATGTGTTTGATGGG
ATGTGTGCTCTAGTGTCCAATAGTTGGACACCAAGCGTGATGTGATGGGG
TGTGGATGTGATGTGCACTCCAACGTCTAGCAGTTGCACATCAGATCACA
CCGCATCCCGTGGTCTAAACACGATAGGATTGTGGCGTGGGATCACCGAC
CCGGCGTTGTCTCAGGGCTATATACGCAGGCGTCTAGTCTCTGGCCCGCT
GTTCCATTGCTCGCCTGCCGTCCTTTGATACCTACAACACGAGTGTGTTG
CTCGCGTTGTTATTTTTCGGTCCGGTATGCTCCGTCCCGGCCGAGTTGTG
ATGTGAGAAGTCCACGGCTGAATAGCTACTCCTGTCGGACGGCAGACCCA
AGTTTTTTTACTTGGGGGCTGCCAGCGAGCACGCAAGGTTCTGTCGCGAG
ACAAGCCAATGAGTATATACACACACATACGAAGTACTTCGAGAAGTGCA
TATATATATATATATGTTCCTACGTTGTGCTTGCCATAGTCCCGAGACCA
TTGACCACGCGCCTCGGTCGAGACTAGAGAGAGCTCTCTCTCCATATATA
TTGTTCAGGCGGTACCCCAGAGACCGCTTGCCCGGGGGCCGTCTTCCTCG
GCCGGAGCATTTGCTGTACCTTTTGCTTGCTTCCCTGCTGTGTGTTCGTT
TTGATGTGGACGTTTTGTCGAAGTATGTGCTCACTTGTACCAGAGCTCGG
CGTTGTCCCGAGACCGTTGTTCATATTCAACCAGTCGGGGGGATTGAGTT
TTCTAAGAACCCTAGTAGTTAAGGAGACTTCGTTTTGAAACCTCCAAGTA
ATTGAGGGACACTAGAGTACAGTCAGAAGCACAGCATACATGTACTTAGT
ACTCGCCTCAGGGCTGTCAGCAATGCACGCAAGGTTATGCCGCAAGACAA
GCCAATGAGTACATGACACACACATACAGAGCTATGCTACGTAGTATATA
TATACCAGGGGTGCAGACCCGACGAGACCGTTGGCAGCGCGCCTCGACCG
AGACGGGTGCTGTGCACGCCCTCTGTTTTATCACTGGCCAGAGGAAGTAT
GTTTTTTGGGCTCAAGCATGGGTTGGGGCTCGGGTTGTGGGCTTGGGTTG
CGGTTGGTGTTTTGCAGGGCGGCCGTCCAGCAAGCAGTATACTGGACCGA
CGGTCGGTGACATGCACAGGACGGGGTGTAATGGCATTGCTGCCAACCCT
GTCCGACGCGAATATATGTACTCATTGGCTTGTCTTGCGACATAGCCGTG
CGTGCAATGCCGACAGCCCTAGGTCGAAACTTCGGGTTTGCCCTCCGACA
GGAGTAGCTATTTAGCCATGGACTCTTGCGTCCCAACTAGGCCGGGACGG
AGCATGCCGGGTTTGCACCGGCCAGGCCGTGCACTGGCCAAGCCCGGAAT
GCCATGACACCTTGGCGTCGGCAAGCCGGATGAGGGGCCGCTCGCTAGAC
TACGACAAAGCGTAGCCGTCGGCGAGTACTTGTGTGAGTCTCTGCGCAGA
CTTGCTCTTGGGCGCACCGGCATCCTAACGGTCACCGGAGGAACGATCAA
GATGATCGATCCCGACCGCTAGGTCACCGACAATGCCGACGCGAATACTG
GGTATACACATACACACACACACACAAGCACACACACTACATAGGAAACG
GCGGGCTTGGGGTGCGTGGGGGGGGGGGGGGCTTCTGGGGGCAGGGCAGC
ACGACCTCCATACTGGTGGACGTAAGCCCGGCTGATTTAGGGTTTGTCCT
CGGTTTGGTAGTTGCTGTACGTACCTGCTCCGTCTCGACCGAGGCGCATG
GTCCATGGTTTCGGGACTACGGCAAGCACAATGTGAGCACATACTACGTA
GTATATGTAGTACTGTTGCGACAATAGCTTCTTTCACCCGTGCACCATGT
CTGATGGTAGCTACAGTAGCATAGTACTATGTGCGGTCTCCGGACCACGG
CAAGCACAGCGTGAGTGTGTGCATGCACGTGCTTGCTTGAAAAGTATGCT
TGGACGCAGAGTATGCGGTCTACGAACCAGCTACTTACTGCACTGCCGTG
CTTGTGAAGTACGGGTACTGGGGTGTTTCGAAACCACGCGTTTGGGACCA
ATGTACTTGGGTTATTCGAAACTCGTTCCACTAGCTACTTGGATGTTTTG
AACGCCGGCCTCGGTGAAAACAAACCACTTGGTACTACTGTACTTCGAAA
GTACTTGAAAGTACCAGAGTATTTCGAAGCCGAGTGTTCATTGAAACTCG
TCCCGCTAGCTCTTTGGACGCTTCGAACAGTGGCCTCGACGAATCTAGTA
GCAACCACTTCGTACTGCTGTACTTCAGCACCACTTGCGGAAGCACTTAT
ACTTTCTGCAAACCACTGAGTGTTGGAACTGCCTGGGTTCTTTGAAAACC
GTCCCGCTAACTACTTGGACGTTTCGAACAATGGCCTCGGGACTGCCATC
GCTGTTCGGCAGGAGTGCTTCGGCTCCTTCCTCCTCCTGGTGCTGCTCTT
CCCCTTCGGCTCCTTCCTGGGGGACACCTGGGCCGGGTGGGTTCAGCACT
TCTTCTGCGTCATGCTGGTGAGCGGCCAAGACGTGCCCACAAAACAGGCC
AATCCGGAGGCGCCTCTCCGCGGATTTTGCAGTGCTGTACCGTGGTGGTG
GTGACGGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGAC
GGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGG
GGGCGGTGGTGGTTGTGGTGGTGGTTGGTGGTGGGGATCTGTTAGCTGTG
GGAACCTCTGTTAGGCGTGCTTCATGCCGGTGAGCGGTGAAGGGCGCAGC
ATGTAGTCCAGAGGCACCTATTCAGCAGGTTTCAGACGCGCTGTACCTTG
GTGACTTGGGGGGGGCGGGGGCTCTGTGTTCTGTGGGTGACCAATCGCGG
CGAGGAGCGAGTCCAATGCGCTGCCTTTGCTGTAAGCGGTTGGCACTACA
ATAGCAGGAAGCGTAGCTTATTCTTTCTTTTTGTGTGTGTTTGCTTTTTC
TTCTACTACGTACAATATTCCTTGGAGCCGTTGCTGGCTTTGCTGACCGG
CTAACAGGGTCCAGCGGTTCTCGTGCTGTGTGTTGCTGGTGACCCCCCCG
CCAAATGACCTCCCCCGCCCCCCCCCAAACCTGCCGCCCCAGCATGACTG
GATCACGGGGGGCTCGCAAGTGAACCCCAGCGTCAGCGTGGCGACCTACT
TCTATGGGTGGAATGACTTCAACACCATGGTGAGGCATGTTGCGACGTGC
AGCTCTCTGCCAAGTGTAGGACATCTTCGGAGCTCTCAACCCTTAGAGGA
CGACGAGGCGCTCACTTATGTCATGCAATGTGACGTGATGCTATGTGATT
TGATGTGTACTCTCATTCTTGCAAAACGTATACTTCCAAGTACTTCGAAG
TACACGAAAAGAAAACGCGCCGCCTGACGACACCAACGAAACCCCGACCC
ACCCACCGCGAATCAATTTCTTACACCAGGCGGTGCGCATCGTGGGGCAG
CTGATCGGGGGCACCGCGGCCTTCCCGGCCATCTCCAAGGTGCTTCCCTC
ATACGTGGAGATGGGGGGGCCCGTCCTGGGCGACCTGGACGTGGCATCGG
GGTCCCTCTGGGAGTTTGGGCTGACCTTCTGCCTCCTCATTGTGGTGTAT
GCGTCAGTCACGCAGGTAACTATGTGTGTGTGTGTGAGGAGTTTGGGCTG
ACCTTCTGCCTCCTGATTGTGGTATACGCGTCAATCATGCAGGTAAGTGT
AGTGTGTGTGTGTGTTTGTTCCGGTCTCTCTGGGAGTTTGGGCCGACCTT
CTGCCTCCTGACTGTGGTGTATACGTCAGTCACGACGGTGGGGGGGGGGG
GATGTGCGCGTGTGCATGTGCGTGCGTGCGTGTGTGCGTGTGTGTGTGTG
TGTGTGCCTTGCTCCCCTCACGTGTCGCTGGCCAGGCGGTGCTGCAGCTG
AACGCTGCTGGTGGCAGCGTTATGTTGTATCACAGGCTGCGACCTTTGCT
ACTTACATACACGTGTACGTGTCGAGTTGTCGTCCGACGTAGCCATGCGT
CCATACGAGTGTAGTCGACAGACCAGGTTTTAAGCTATAACGGGGATGGG
GGGGGTATTGACGTGGCCACCCCTCCGCTTCTGGTGGGGGGGGTGGCCAC
CCCCTCCCACCCTGGCTCTGCCAGGGGAGGGAGGGGTCTCGCTCCGTCTC
GACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGA
GTACATATATAAATACACTTCGTATATATATATACAACCATGGACCCGCC
TCCTTTCCCTCCCGCCCAGGGAAACCCGCCAGTTTTTTTACGCGTCGGTG
TTCAACTTTGCGAGGTGTCATGCGTGCGCCCCATGAACCAATCAGCGACC
GCCAGAAACCGAACCAAAACCCAAAACATTCGGATAGCCACTAGTACAAG
AACACCCAATCTCACACACGTGCAATTGTACCTCGTTGCTTCGAAGTACA
ATTTGTGCGAATCACCCACAACTTCAGGGTGCGGGATGGGATTTGGTGTC
GGGTGACAATTTGAAAACATCGAAAGAAGCCACCACAACGGTGGGCGAGG
TCGTCCCACGGGGACTGAAACTCGGTTTTTGGGCCGGATTACACCCGCCG
ATGATGAACCGGCAGTTCTCATCGGCCCAAGTATAGTCGTCGTTTTCGGG
ACATACGAGCGCTCGCAGACGAACATGGCGGGTTTCGTCGATTCGGGCCG
CCGACCAAACAGTGTTAAACGTCGGGCTTTGTACATGTTGTTGAATCGTG
CAACCCTGCTCCGTCTCGATCGAGGCGCCTTGTCAATGGTCTCGGGACTA
CGGCAAGCACAACGTGAGTACATACTCGTACTAGTACACAATCTTGCCCC
CCGTGCCTCTCTGCCTGCCTCCCCAAAAAAAAAAAAAAAAAAAAAATGCC
AATGCAGCTGGGGCTTCCGGCACAGCGCCCTGTGATCGCGGGCGGCATCC
GGGCCCTCATCTACTACGGGTCCAAGACGGGGCCGGCCATGAACCCCATG
ATCGCCTTCGCCTGGGTGAGGATGAGTAGGCGTCCATGTGTGCTGTGTGT
GTGATGTGACGTGATGTGTATATGCTCGTATGTATATATATATATATGTT
CTCACTTTGTGCTTGCTGTATTCCCGAAACCATTGTTGACCACGCGCCTC
GATCGGTTACACTACAGTCCTCCGGAGAGATAAATGGCTACAGTCCTCGA
AGACATGTGGCCGTAGCCAGCCTGCCCAGCCATAGCAAGTAGGCGGAACA
GCGCTCCGGCCCGCAGTCACCCCTGTGGGCCCCTCTGGGTGGTCAATGGA
GATTGGTCGAAGCAGACAATTCATGCGCGTGCCCCTCAACACCCCCCCCC
TCACGCACACACACACCTGGAACCGCCCCCGGCCCCACCCTTCCCTCCCG
TGCTCGCCGGGGAGACGTGTTTCAAATTCCTCGCAAAACCAAAAGTATAG
GGTCTTCAGTAACCTGATAGGCCCGATCGATGCGGACGACGATTTTACCA
TTGGGTACCCGACCCCCACCCACCCAACCAATACCCGAAACCCAAACCCA
GACCCCGAAACAGCACGGAATACTAAAACTTAACGCGTTCGACAAACATT
TTCCGATACTGAAGATCCTATAGCTAGGCGCGGAGGTTCTAACACTACTG
TCGCCGGGGGACGGGCCGTGTCACTGACAGGCGTTCTACGCGGCCCGCGA
GAGCATCAACATGGACCACTTCCTGGTTTACTGGTTGGCCGCGACGGCGG
GGGGCGTGGCGGCCACCTTGGTGTGGAAGACGGTGGAGCCCAAGGAGGAG
GACAAGAAGAAGACCGCCTAGTTTTTTTCCTCGTTTCTTGTTTGTTTTTT
AGGTCACATGCGTGCGTGCGTGCGTGCGCCGCCCAAGCCGGAGGTGATGA
TGATGCGGCCCTGAAAGGATTGATTGGCCAGTTCTATTGTGAGCGAGCGC
TGTAGGAAGAAGATAGGCTCCTTTGGAGGAGCTTAGGGTCCGCAGCGCAA
AGTCGGCCGGTGCTCAATTTTTGGACCTTTGGGGTTGGAACGCGGCGGAG
CCGCCAACGGGAAGTAGACAAATTTGGAAGTCCTAGGACATAGAGGGAAG
CCGGAGCTGATCGTGAGTAAGGAAGGATTTATTCACGGCTCTATCATGTT
CGAAGTAGAAGGCGTCCTTTGGGAAACGCCGCCCAAGTCGGAGGCGCATT
CGGAGCCCCGGGGCCAGGGGGGCAAGGGGGCAAGGGCATGCTGTGTGCCC
CCTGGGGTGGGCTGGCGGGCCAGGCCCCCGGGGCCGGAGTCGTTCAGCCG
CCAGTGATGAAGAGGGGAAATCTAGCGAGCACCATGATTGCCGTTTGCCC
GGCAGGGCAGGCCCCGGGCGGGGGGGCAGCGGGCCGCACGGCCGGCTCCT
GAGCAGATGCATAAGTTGCCCCCCTCTCTGCCTTCCGGGCGGCAGCCTGA
GTGTGTTAAGGCGCACCTTCCGAGTCAGGCGTTGACTCGGAGGCTGCATG
CCAGTGCTTGTTGTGGAAGTGTTGAGCTGCCTGAGTACAGTACGCTTCCA
CCAGGGGGGCCTCTACTACAGTATGTACTTCGAAGCACGAGTACTCTGGT
AAGTCGTGGGAGGGGGGCGAGTCTGCAGTAACTATAGATAGAAGAACAGG
TGGGGTGCAATTTTTTTAATTCCAGTTTCATGAGGGGACTGGTGTTTCCG
CGCAAATGCCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2918351..2926212+

>mRNA_S-ischiensis_contig8.19655.1 ID=mRNA_S-ischiensis_contig8.19655.1|Name=mRNA_S-ischiensis_contig8.19655.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1320bp|location=Sequence derived from alignment at S-ischiensis_contig8:2918351..2926212+ (Schizocladia ischiensis KU_0333)
ATGTCTCAAAAGCTTGTGGGCGTGTTCCTGCAGATGTCTCAAAAGCTTGT
GGGCGTGTTCCTGCAGGAGTGCTTCGGCTCCTTCCTCCTCCTGGTGCTGC
TCTTCCCCTTCGGCTCCTTCCTGGGGGACACCTGGGCCGGGTGGGTTCAG
CACTTCTTCTGCGTCATGCTGGAGTGCTTCGGCTCCTTCCTCCTCCTGGT
GCTGCTCTTCCCCTTCGGCTCCTTCCTGGGGGACACCTGGGCCGGGTGGG
TTCAGCACTTCTTCTGCGTCATGCTGCATGACTGGATCACGGGGGGCTCG
CAAGTGAACCCCAGCGTCAGCGTGGCGACCTACTTCTATGGGTGGAATGA
CTTCAACACCATGCATGACTGGATCACGGGGGGCTCGCAAGTGAACCCCA
GCGTCAGCGTGGCGACCTACTTCTATGGGTGGAATGACTTCAACACCATG
GCGGTGCGCATCGTGGGGCAGCTGATCGGGGGCACCGCGGCCTTCCCGGC
CATCTCCAAGGTGCTTCCCTCATACGTGGAGATGGGGGGGCCCGTCCTGG
GCGACCTGGACGTGGCATCGGGGTCCCTCTGGGAGTTTGGGCTGACCTTC
TGCCTCCTCATTGTGGTGTATGCGTCAGTCACGCAGGCGGTGCGCATCGT
GGGGCAGCTGATCGGGGGCACCGCGGCCTTCCCGGCCATCTCCAAGGTGC
TTCCCTCATACGTGGAGATGGGGGGGCCCGTCCTGGGCGACCTGGACGTG
GCATCGGGGTCCCTCTGGGAGTTTGGGCTGACCTTCTGCCTCCTCATTGT
GGTGTATGCGTCAGTCACGCAGCTGGGGCTTCCGGCACAGCGCCCTGTGA
TCGCGGGCGGCATCCGGGCCCTCATCTACTACGGGTCCAAGACGGGGCCG
GCCATGAACCCCATGATCGCCTTCGCCTGGCTGGGGCTTCCGGCACAGCG
CCCTGTGATCGCGGGCGGCATCCGGGCCCTCATCTACTACGGGTCCAAGA
CGGGGCCGGCCATGAACCCCATGATCGCCTTCGCCTGGGCGTTCTACGCG
GCCCGCGAGAGCATCAACATGGACCACTTCCTGGTTTACTGGTTGGCCGC
GACGGCGGGGGGCGTGGCGGCCACCTTGGTGTGGAAGACGGTGGAGCCCA
AGGAGGAGGACAAGAAGAAGACCGCCTAGGCGTTCTACGCGGCCCGCGAG
AGCATCAACATGGACCACTTCCTGGTTTACTGGTTGGCCGCGACGGCGGG
GGGCGTGGCGGCCACCTTGGTGTGGAAGACGGTGGAGCCCAAGGAGGAGG
ACAAGAAGAAGACCGCCTAG
back to top