mRNA_S-ischiensis_contig8.19653.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19653.1
Unique NamemRNA_S-ischiensis_contig8.19653.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2873846..2878264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005140.1
Exons5
Model size1116
Cds size1065
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.3823094-UTR-S-ischiensis_contig8:2873845..28738641622817295.3823094-UTR-S-ischiensis_contig8:2873845..2873864Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2873846..2873864 -
1695741003.9713385-UTR-S-ischiensis_contig8:2873845..28738641695741003.9713385-UTR-S-ischiensis_contig8:2873845..2873864Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2873846..2873864 -
1622817295.4507184-UTR-S-ischiensis_contig8:2878232..28782641622817295.4507184-UTR-S-ischiensis_contig8:2878232..2878264Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2878233..2878264 -
1695741004.052852-UTR-S-ischiensis_contig8:2878232..28782641695741004.052852-UTR-S-ischiensis_contig8:2878232..2878264Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2878233..2878264 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.3943958-CDS-S-ischiensis_contig8:2873864..28740291622817295.3943958-CDS-S-ischiensis_contig8:2873864..2874029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2873865..2874029 -
1695741003.9825304-CDS-S-ischiensis_contig8:2873864..28740291695741003.9825304-CDS-S-ischiensis_contig8:2873864..2874029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2873865..2874029 -
1622817295.4053848-CDS-S-ischiensis_contig8:2874404..28745121622817295.4053848-CDS-S-ischiensis_contig8:2874404..2874512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2874405..2874512 -
1695741003.993621-CDS-S-ischiensis_contig8:2874404..28745121695741003.993621-CDS-S-ischiensis_contig8:2874404..2874512Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2874405..2874512 -
1622817295.4178147-CDS-S-ischiensis_contig8:2875221..28753861622817295.4178147-CDS-S-ischiensis_contig8:2875221..2875386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2875222..2875386 -
1695741004.0062084-CDS-S-ischiensis_contig8:2875221..28753861695741004.0062084-CDS-S-ischiensis_contig8:2875221..2875386Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2875222..2875386 -
1622817295.428616-CDS-S-ischiensis_contig8:2876009..28761661622817295.428616-CDS-S-ischiensis_contig8:2876009..2876166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2876010..2876166 -
1695741004.0191271-CDS-S-ischiensis_contig8:2876009..28761661695741004.0191271-CDS-S-ischiensis_contig8:2876009..2876166Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2876010..2876166 -
1622817295.4392085-CDS-S-ischiensis_contig8:2877762..28782321622817295.4392085-CDS-S-ischiensis_contig8:2877762..2878232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2877763..2878232 -
1695741004.036132-CDS-S-ischiensis_contig8:2877762..28782321695741004.036132-CDS-S-ischiensis_contig8:2877762..2878232Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2877763..2878232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19653.1prot_S-ischiensis_contig8.19653.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2873865..2878232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19653.1

>prot_S-ischiensis_contig8.19653.1 ID=prot_S-ischiensis_contig8.19653.1|Name=mRNA_S-ischiensis_contig8.19653.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=355bp
MYAQLRGTQGETLCGRSLSSPNLLAARAMAQGSTDMYCLAGATGMLPTSW
RPPHARGCHVPLGAHAAARPCGKEDPERGHEEREHRGCEAFHGEHSCLPM
PALGSAAVARLVDDCGQCGVEAVAAREPERAVNRDQALRPQRLDTRVLAL
SVARHASSAPKNKRPCLSDMKGPLEHLAPKKLGVTAVKACVLGVVPILLE
LCQSVLEPTDDTSTEGSEHGRESAAGGDGNEEEEEEDDDDDDIDWDAISD
ALWSGRIADTALTNVIQNMCRMVGVTTVRCSMEQAVAPFVSVRFLDRLTK
NVRTSAIRKVERSGRRWAAWRVMRTCGYALLLDNLASLAFNEAIVLVKML
WQER*
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mRNA from alignment at S-ischiensis_contig8:2873846..2878264-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19653.1 ID=mRNA_S-ischiensis_contig8.19653.1|Name=mRNA_S-ischiensis_contig8.19653.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4419bp|location=Sequence derived from alignment at S-ischiensis_contig8:2873846..2878264- (Schizocladia ischiensis KU_0333)
GCACCAACTGCAGTGCTACCAAGGTCGCCATCATGTACGCGCAGCTGCGC
GGGACGCAGGGTGAGACGCTATGCGGGCGTTCCCTGTCTTCCCCGAACCT
GCTTGCGGCCCGGGCTATGGCCCAGGGATCCACCGACATGTACTGCCTGG
CGGGCGCGACAGGCATGCTGCCGACGAGCTGGAGGCCGCCTCACGCACGC
GGATGCCACGTCCCCTTGGGAGCCCATGCCGCGGCTCGTCCCTGCGGGAA
AGAGGATCCAGAAAGGGGCCATGAAGAGCGGGAACATCGAGGATGCGAGG
CGTTCCACGGGGAGCATTCGTGCTTGCCCATGCCTGCTCTGGGGTCCGCT
GCAGTCGCACGGTTGGTCGATGACTGTGGGCAATGCGGCGTAGAGGCTGT
AGCTGCGAGGGAGCCTGAGCGGGCGGTGAACCGGGATCAGGCACTGCGTC
CGCAACGGCTAGACACGAGGGTGCTGGCCCTGTCTGTGGCTCGACACGCC
AGGTGAAAAGGGGCCTGACTGGGGGCACACTTGCAGCAAGCCCGTAGTCG
TCGTGAGTGCGTGAATATACACACAGAGGTAGTGTGTGTGAATGGCGATA
CCAAGCCACTGCCGCTCGATTCTCACGTGTGAGCGATGCGTGCAATTCTC
GATCCCTGTATTTGCACCTCTCCATGTGCTGACCGGAGCCAGACCATGTA
CAGGTAGTAGCAACATGTTGCTGTGCCTCGCTGAGGAGACGCCCCGGGCA
TGGGTGTTATCCATTAGATCGATGACGGCACACGCACTCTTTCCGTTCTC
GACCTTTGAAGGATAACGGCACCCGTATTAGCTGTGGTCTTTCTGTGACG
AGACAGCATGCCGCTGTCCTCCCGATTCAATCCCTCCAGCTTGACGTGTC
AGTCGTGCTACTACTGTAGTAGTCTGGGGAACTGCGCACACAGTCCAAGG
TCTCGGGGACTACGTCACGGGCAAAGGGCAACACATTCCATTGCCTGTAA
AATGTAGTTCATTTGGTACCTACCAATGGCGTGCCGGGATCGGTCTGTAA
ATCCACGCATGTCGGTGATTACGAACCCGGGTGAGCTCCGTCCCGGCCTA
CGTAGCTCGGACGCCAGGCCAATGCCCGACAGGCTTCCCTACTGGGGGCT
AGTCGGCGGGCCAATGGCCGAACCGGCACCCTGCGGGGGGCCGGTTCTGC
CTGCCCGACGACCGGAGCCATGCACGGGAATTGGTAGCTACCTGTCCGAC
ATTGGTACCAGTGTACTTTGAAGTACCTCAAAGTACTCGTACTGCTGTAC
TTGTTGTGTACTAGCATCGGACAGGGTTGCGGACAGGGTTGCGGTGTCAT
GTGCATGCCACTGACTGCCGGCCCAGTACACTACCTACTTGCTGGACCCC
CGGCCAGCCCCCACAGGGCAGCCTTTCGCCTGTTGGCCTCGCGTCCCAAC
TGTACTATTCGGGGACGGAGCATCCGGGTTTCCAGCTGCCAGGCATGGTT
TGGCCAGGCGTGGCTTGCTATTGCGGGGCATGAGGGGCACCCTGCACGAG
CCGGCTGGCTGGTCGTGCGGCGGGAAGCGGTGCATCTCTTTCGCTTATTC
TTGTGCTGTGTTCACCAGGGGCATGAGTACACACATTCACCGATTTTCTC
CAGTACGATGAGCTGTGCCCGTAAGGGTCATGTTATCATACGCAAACCTT
TCCAGGCCTTGCCGGCCTCAACCCTGTAGGCGGTCTGTTTGGTGTGGTAC
TCTGATCCTTCGCTACATTCCTGTAAGTACCTTACTGCAGCGAGCTTGCC
GCCGTCCTTGCAAAGGGAGAACTCCCAGTACCCATCTGGCTTCCGCCCCC
CCCCCTCTGATCCCTTGCTACATTCCTGTAAGTACCTTGCTGCAGCAGAG
CTTGGCGCCGTCCGTGTTAAGGGAGAACTCCCAGTGCCGATCTGGCTTCC
CCCCCCCCCCTCTGATCCCTCGCTACATTCCTGTAAGTACCTTACTGCAG
CAGAGCTTGCCGCCGTCGTTGTAAACGTAGAACTCCCAGTGCCGATCTGG
TTTCCACCCCCCCCCCCCCCCCCCCCCCCCCTGGGACACGGGGCTCAGCT
CAGCGCCCAAGAATAAGAGGCCGTGCCTGTCTGACATGAAGGGGCCGCTG
GAGCACCTGGCCCCGAAGAAGCTGGGGGTGACGGCTGTGAAGGCGTGCGT
GCTGGGAGTGGTGCCCATCCTTCTAGAGCTGTGCCAGTCCGTCCTCGAAC
CCACAGTGAGTGAGTCGTCGCCGCGGTGTGTGTCTGTCTTTTATGTCTTT
TTCTTCCGTCCTCCTTCCGTCCTCCTTCCTTCCCTCCTCCTCCTCCTCCT
CCACCTCTTTCTCTTTCTTTTTGCCGTGCTTCGTATACAAGTATTATACT
TCGTATATATGTCCTCACGTCCGAATGTGAGTACACACTCACGTTGTGCT
TGCCGTAGTCCCGAGACCATTGACCGCGCGCCTCGATTGAGACGGAGCAG
GCACGCTCCCTCCCCTGGCAGAGAACGCACCTGTTGGGGGGGGGGGCATC
GGGCCCCAACCCGACACGCGCCACTGTTTGTCTCGACAGGCGAGAAGAAT
GTGCATTGTGCCATGCGCAGACGTGTGTCTCGCTGCCTGCCCTTGCCATG
CCCGCTCGCCCGTCTCGTCTCGGCTCTGCCGTCCTTCAGGGATGGAATAC
CGATCAGTAGATAGTTACGGGCTCGACTGATTGTGTGGGTGGCGTCACTA
TCTACGTACTTGGATTTAGTGTGGGTCAAACTATCGAATATCTACTATCG
ATAGATATATGGATCAGTGCTGTCCATGAATAGGTTGATGTGCTTAGATA
TTCCATCACTGCCGTCCTTGGAGTGCAGGACGACACCTCCACTGAGGGTT
CTGAGCACGGGCGCGAGAGCGCCGCGGGGGGCGATGGCAACGAGGAGGAG
GAGGAGGAGGATGACGACGACGACGATATCGACTGGGACGCCATCAGTGA
CGCGTTGTGGTCTGGGAGGATTGCGGACACCGCGCTCACCAATGTGCGTG
CGTTGCGTTGTGTGATGTGATGTCGGAAGATGGTACTGTCGAGTACGGGC
CATATGTACGGTTCGAGTGTTGATGTGATGTGATGTGGTGCCAAACTGTG
GTGCTGTAGGGTATGTATGCGTCATATCGCGCGTCAAGTAGTGATGTGAT
GTGATGTCAAACTGCAGTACTGTAGGGTATACATCATATCGTGTCGAGTA
TTGATGTGATGTGATGTCAAACTATAGTACTGTACAGTGCACATCATATC
AAGTCGAGTACTGTAGTGATGTGATGTGAGGTCAAACTATTGTACAATAG
AGCACGCGTCACATCACACCTTGTTCGACTGATGTGATGTGATGTGGTGT
CAAACTACCATGCAATATATCTCCCCCCGTGTTGTTCCTGTTAGCACTGT
ACAATAGAGCCCGCATCACATCCACTGATATGATGTGATGTGATGTCAAA
CTACTGTACCATACAGCACGCATCACATCACACTTTAGTCGACCGATGTG
ATGTGATGTGGCGTCAAACCACTGTACAATAGAGTACACATCACATCACA
TCACATTCGTGTTGCTGCATCGCCCTCAATGGGTTGATGTAACTACTGAC
CCAACAGGGATTGAGTACCCTACACACCGTGTGCTTCCCGCATTCCGGAG
GCCAAATTGACTGCCGCGACCAACCACTGTGTGCGTATGCACGCCATCGC
AGGTGATCCAAAACATGTGTCGGATGGTGGGTGTCACGACGGTGCGCTGC
AGCATGGAACAGGCGGTGGCGCCCTTTGTCAGCGTGCGTTTTCTGGATCG
CCTGACCAAGGTGATAAAAAACGAGGCATGCTTCGGAACCCGGGCCCACG
CACCCCATGCGTGTGTAGGTCCTGCAGCCAACCCGTTGTCTTCTCCCTGA
GTCTTGCATTTGTCGTGATTGCACAAGTACAAGTGTGTGTGTGTGTATGT
GTGTGTGTCCTCAGGCTGTGCTTGCCGTGGCGCCGTCGCTGTCAATGGTC
ATGCGGCTACAGGCACCCCCCCCCCCTCCCGACAAGGAGAGGTTGGTCGT
AGCCAACCTCCCCACCACCTATCACAGGAAACAGTGCTCCGCCTCGTGTG
GTCACCCCTGTGGGACGCGTGGTCAATGGTCATTCGCCTACGGCAGCACA
TCACGAGCCCCCCACCGCCACGATGCACGCTCCAGAATGTGAGGACCTCG
GCTATACGCAAGGTGGAGCGCTCGGGGCGTCGCTGGGCCGCATGGCGGGT
GATGCGGACTTGCGGGTACGCCCTGCTCTTGGACAACCTGGCGTCCCTGG
CCTTCAACGAGGCCATTGTACTGGTAAAAATGTTGTGGCAAGAGCGGTGA
GTTGGGGCGGCAGCGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2873846..2878264-

>mRNA_S-ischiensis_contig8.19653.1 ID=mRNA_S-ischiensis_contig8.19653.1|Name=mRNA_S-ischiensis_contig8.19653.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2130bp|location=Sequence derived from alignment at S-ischiensis_contig8:2873846..2878264- (Schizocladia ischiensis KU_0333)
ATGTACGCGCAGCTGCGCGGGACGCAGGGTGAGACGCTATGCGGGCGTTC
CCTGTCTTCCCCGAACCTGCTTGCGGCCCGGGCTATGGCCCAGGGATCCA
CCGACATGTACTGCCTGGCGGGCGCGACAGGCATGCTGCCGACGAGCTGG
AGGCCGCCTCACGCACGCGGATGCCACGTCCCCTTGGGAGCCCATGCCGC
GGCTCGTCCCTGCGGGAAAGAGGATCCAGAAAGGGGCCATGAAGAGCGGG
AACATCGAGGATGCGAGGCGTTCCACGGGGAGCATTCGTGCTTGCCCATG
CCTGCTCTGGGGTCCGCTGCAGTCGCACGGTTGGTCGATGACTGTGGGCA
ATGCGGCGTAGAGGCTGTAGCTGCGAGGGAGCCTGAGCGGGCGGTGAACC
GGGATCAGGCACTGCGTCCGCAACGGCTAGACACGAGGGTGCTGGCCCTG
TCTGTGGCTCGACACGCCAGATGTACGCGCAGCTGCGCGGGACGCAGGGT
GAGACGCTATGCGGGCGTTCCCTGTCTTCCCCGAACCTGCTTGCGGCCCG
GGCTATGGCCCAGGGATCCACCGACATGTACTGCCTGGCGGGCGCGACAG
GCATGCTGCCGACGAGCTGGAGGCCGCCTCACGCACGCGGATGCCACGTC
CCCTTGGGAGCCCATGCCGCGGCTCGTCCCTGCGGGAAAGAGGATCCAGA
AAGGGGCCATGAAGAGCGGGAACATCGAGGATGCGAGGCGTTCCACGGGG
AGCATTCGTGCTTGCCCATGCCTGCTCTGGGGTCCGCTGCAGTCGCACGG
TTGGTCGATGACTGTGGGCAATGCGGCGTAGAGGCTGTAGCTGCGAGGGA
GCCTGAGCGGGCGGTGAACCGGGATCAGGCACTGCGTCCGCAACGGCTAG
ACACGAGGGTGCTGGCCCTGTCTGTGGCTCGACACGCCAGCTCAGCGCCC
AAGAATAAGAGGCCGTGCCTGTCTGACATGAAGGGGCCGCTGGAGCACCT
GGCCCCGAAGAAGCTGGGGGTGACGGCTGTGAAGGCGTGCGTGCTGGGAG
TGGTGCCCATCCTTCTAGAGCTGTGCCAGTCCGTCCTCGAACCCACACTC
AGCGCCCAAGAATAAGAGGCCGTGCCTGTCTGACATGAAGGGGCCGCTGG
AGCACCTGGCCCCGAAGAAGCTGGGGGTGACGGCTGTGAAGGCGTGCGTG
CTGGGAGTGGTGCCCATCCTTCTAGAGCTGTGCCAGTCCGTCCTCGAACC
CACAGACGACACCTCCACTGAGGGTTCTGAGCACGGGCGCGAGAGCGCCG
CGGGGGGCGATGGCAACGAGGAGGAGGAGGAGGAGGATGACGACGACGAC
GATATCGACTGGGACGCCATCAGTGACGCGTTGTGGTCTGGGAGGATTGC
GGACACCGCGCTCACCAATGACGACACCTCCACTGAGGGTTCTGAGCACG
GGCGCGAGAGCGCCGCGGGGGGCGATGGCAACGAGGAGGAGGAGGAGGAG
GATGACGACGACGACGATATCGACTGGGACGCCATCAGTGACGCGTTGTG
GTCTGGGAGGATTGCGGACACCGCGCTCACCAATGTGATCCAAAACATGT
GTCGGATGGTGGGTGTCACGACGGTGCGCTGCAGCATGGAACAGGCGGTG
GCGCCCTTTGTCAGCGTGCGTTTTCTGGATCGCCTGACCAAGGTGATCCA
AAACATGTGTCGGATGGTGGGTGTCACGACGGTGCGCTGCAGCATGGAAC
AGGCGGTGGCGCCCTTTGTCAGCGTGCGTTTTCTGGATCGCCTGACCAAG
AATGTGAGGACCTCGGCTATACGCAAGGTGGAGCGCTCGGGGCGTCGCTG
GGCCGCATGGCGGGTGATGCGGACTTGCGGGTACGCCCTGCTCTTGGACA
ACCTGGCGTCCCTGGCCTTCAACGAGGCCATTGTACTGGTAAAAATGTTG
TGGCAAGAGCGGTGAAATGTGAGGACCTCGGCTATACGCAAGGTGGAGCG
CTCGGGGCGTCGCTGGGCCGCATGGCGGGTGATGCGGACTTGCGGGTACG
CCCTGCTCTTGGACAACCTGGCGTCCCTGGCCTTCAACGAGGCCATTGTA
CTGGTAAAAATGTTGTGGCAAGAGCGGTGA
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