mRNA_S-ischiensis_contig8.19652.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19652.1
Unique NamemRNA_S-ischiensis_contig8.19652.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2871919..2873241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19652.1prot_S-ischiensis_contig8.19652.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2871919..2873084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.8950417-CDS-S-ischiensis_contig8:2871918..28720771622817261.8950417-CDS-S-ischiensis_contig8:2871918..2872077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2871919..2872077 -
1695740978.1154778-CDS-S-ischiensis_contig8:2871918..28720771695740978.1154778-CDS-S-ischiensis_contig8:2871918..2872077Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2871919..2872077 -
1622817261.9057567-CDS-S-ischiensis_contig8:2873012..28730841622817261.9057567-CDS-S-ischiensis_contig8:2873012..2873084Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2873013..2873084 -
1695740978.1287122-CDS-S-ischiensis_contig8:2873012..28730841695740978.1287122-CDS-S-ischiensis_contig8:2873012..2873084Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2873013..2873084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.9163382-UTR-S-ischiensis_contig8:2873084..28732411622817261.9163382-UTR-S-ischiensis_contig8:2873084..2873241Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2873085..2873241 -
1695740978.138334-UTR-S-ischiensis_contig8:2873084..28732411695740978.138334-UTR-S-ischiensis_contig8:2873084..2873241Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2873085..2873241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19652.1

>prot_S-ischiensis_contig8.19652.1 ID=prot_S-ischiensis_contig8.19652.1|Name=mRNA_S-ischiensis_contig8.19652.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=77bp
MPPPPGAAADDEQSLWEQSRFNVNYTLAAIVTQPVSVALGVLVSPSRGPT
IVLLFVDVLISAIASVGPFQPPPSPGT
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mRNA from alignment at S-ischiensis_contig8:2871919..2873241-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19652.1 ID=mRNA_S-ischiensis_contig8.19652.1|Name=mRNA_S-ischiensis_contig8.19652.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1323bp|location=Sequence derived from alignment at S-ischiensis_contig8:2871919..2873241- (Schizocladia ischiensis KU_0333)
TGGTGGTGCCGCCACCGCCACTACCAACACAGGCACCATGTTGCGGCCCC
TTCTCATCCCCGCTTCAACCGTATGACCTTGCTACGGTGGCGGTGGCGGC
GGCGGCAGGAGGAGGCGGCGGAGGAGGAGGCAGCACGAAGCCGAAGGGGA
CGCCGTGATGCCCCCGCCGCCGGGGGCGGCGGCGGATGATGAGCAGAGCT
TGTGGGAGCAGTCGCGCTTCAATGTCAATGTGAGCGGCGGAGGGCACGGG
CGAGCGGCAACTGCAGTAACTCTTTGAAGACGAGCGGGCACAATCGGGTA
CTTGTACACGCCACGGCTGCCGCGTGGGCGAAAAACACGGGTATGAGTAC
TCGTGCAGTACTTGCCGGTCCGAAACATGGGGCTTGTTGACTGCGCCGCA
GGTTGCCGTCGTTCGACGCTCTGGTTATATACCCGTTTTTATTTTGTGTT
ATGGCGGGCGCACCTCTCGACGCCTACATTACCTAGTGTGACCTCGCTGT
GTACCCGATTCTGTCCACTGCCACGTGCACCAATCGACAGCCACCTCCAC
CTCCACTGCGAAACCCTCCACCGCCACTGCCTCCACGTCCACCCCCCACC
CCCCCTCCACCACCCCCTGCATCACCACCACCACCACCCCCATCTCCACC
ACCACCTCCACCACCATCACCACTACCACCACCACCACCACCACCGCCAC
CACCACCACTCCCATCTCCACCACCTCCGCCACCCACCGCCACCACCGCG
GCTGCCGCTGCCACCATCCCCCCACTGCCGCCATCCCACCGTGGACACCC
CCCCCCCCCCCAGCGCCACCACCATGGCACAGCGAACCGCCTACCTACCC
CCCGCCCCCTCCCCTCCGCCCGGCACTGCGGCCTCAACACACCCTGTACC
AGTGATGGAATATCTAAGCTATTTGTCACAGTACTGGTCTATTTTGAGTG
GTAGATAAGCGGCGAGTTCCGGGCCCCTACCAGGGAAGGGAGTAATGAAT
AGAATATATCTATCGATAGTCGATATTCGATAGTTTGACCCACACTAAAT
CCAAGTAGTTACTAGTAGTGACGCCACCCACAAAATCAGTCGAGCCCAAC
TATCTACGGTACTGATCGATATTCCAACACTGCCCTGTACACCCGCACCC
ACCTCCCCCGACAGTACACTCTGGCGGCTATCGTCACCCAGCCGGTCTCG
GTGGCGCTGGGTGTGCTGGTGTCGCCCAGCCGAGGCCCAACAATCGTCCT
CCTCTTTGTGGATGTCCTCATCAGCGCCATCGCCTCCGTGGGGCCCTTCC
AGCCTCCCCCCTCTCCCGGAACA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2871919..2873241-

>mRNA_S-ischiensis_contig8.19652.1 ID=mRNA_S-ischiensis_contig8.19652.1|Name=mRNA_S-ischiensis_contig8.19652.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=462bp|location=Sequence derived from alignment at S-ischiensis_contig8:2871919..2873241- (Schizocladia ischiensis KU_0333)
ATGCCCCCGCCGCCGGGGGCGGCGGCGGATGATGAGCAGAGCTTGTGGGA
GCAGTCGCGCTTCAATGTCAATATGCCCCCGCCGCCGGGGGCGGCGGCGG
ATGATGAGCAGAGCTTGTGGGAGCAGTCGCGCTTCAATGTCAATTACACT
CTGGCGGCTATCGTCACCCAGCCGGTCTCGGTGGCGCTGGGTGTGCTGGT
GTCGCCCAGCCGAGGCCCAACAATCGTCCTCCTCTTTGTGGATGTCCTCA
TCAGCGCCATCGCCTCCGTGGGGCCCTTCCAGCCTCCCCCCTCTCCCGGA
ACATACACTCTGGCGGCTATCGTCACCCAGCCGGTCTCGGTGGCGCTGGG
TGTGCTGGTGTCGCCCAGCCGAGGCCCAACAATCGTCCTCCTCTTTGTGG
ATGTCCTCATCAGCGCCATCGCCTCCGTGGGGCCCTTCCAGCCTCCCCCC
TCTCCCGGAACA
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