mRNA_S-ischiensis_contig8.19651.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19651.1
Unique NamemRNA_S-ischiensis_contig8.19651.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Match: D7G3L0_ECTSI (PI31_Prot_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L0_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.310e-50
Identity = 113/217 (52.07%), Postives = 132/217 (60.83%), Query Frame = 1 
Query:    4 GVSTVLAKASRAGVEAPRQPLHGLALGLHCLMVDEGFVCTGTDDQA-AVKGFAAPIRDVPQDKLVPQGWDKDPGAVSFRYRRPDSPGKVYLLKVLAAGGQAIMHLAERGGGMESTEVDMGALSA-------SEEFYEGLFTRFRESVMNPVAPQT--KPPAPAAAEETSTPPAGGVGAGPSRQPPPDREIPLPGPPEPSPYYDDDPLRVGPPRFPGP 624
            G   VL+KA +A V  P+  LH  AL LHCL+V EGFVCTG DD+A A+KGFAAP+RDVPQ+KLVP  WD DP AVSFRYRRPD  GKVYL K +A GG A   L E+GG ++S +VD+  L         SE F+E LF+ FR  V+  +AP     PP PA  E   T PA      PS    P   IP       +   DDDPLRVGPPRF GP
Sbjct:   23 GTGVVLSKAYQARV-TPKSALHASALALHCLLVTEGFVCTGQDDKAGAIKGFAAPVRDVPQEKLVPDRWDADPSAVSFRYRRPDRTGKVYLFKAVAGGGPAQFFLGEKGGEIQSADVDLEPLERCGPKFFESEGFFETLFSVFRREVLAHIAPPVVAPPPQPAGGE---TVPAPDRNFSPSTSGKPRPAIPG------TAAEDDDPLRVGPPRFAGP 229
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BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Match: A0A7S1C882_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C882_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.690e-22
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    7 VSTVLAKASRAGVE--APRQPLHGLALGLHCLMVDEGFVCTGTDDQ-AAVKGFAAPIRDVPQDKLVPQGWDKDPGAVSFRYRRPDSPGKVYLLKVLAAGGQAIMH 312
            ++ V A   R G E   P      +A+ LH  M+D GF CTG DD+ AAV GFAAPIR +P+ +++P+GW+  PGAVSFRYR P   GK  LLK L  GG   +H
Sbjct:   20 LAAVRASMERGGSEIGTPSTATEVIAVALHIAMLDNGFECTGKDDEDAAVAGFAAPIRVLPRGQVLPRGWNDAPGAVSFRYRHPRRAGKTVLLKCLGVGGSVAVH 124
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BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Match: A0A835ZEP6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.040e-10
Identity = 36/80 (45.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:    1 GGVSTVLAKASRAGVEAPRQPLHGLALGLHCLMVDEGFVCTGTDDQAA------VKGFAAPIRDVPQDKLVPQGWDKDPG 222
            G     L +  RAGV   R P   LAL LH  ++++GFVCTG  + A       V GFAAP+RDVP++K VP+GW+ + G
Sbjct:  191 GEAGAALRRIRRAGVHG-RTPFQALALVLHAFLMEQGFVCTGLHEGAGAQGGARVAGFAAPVRDVPEEKFVPEGWNAEGG 269
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BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Match: A0A7R9ZHP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHP1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.040e-7
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1 
Query:   55 RQPLHGLALGLHCLMVDE--GFVCTGTDDQA---------AVKGFAAPIRDVPQDKLVPQGWDKDPGAVSFRYRRPDSPGKVYLLKVLAAGGQAIMHLAERGGGMESTEVDMGALSASEE 381
            R PL  +AL +H  +V +  GF CTG   ++            GFAAPIR++P+ K VP GWD   G V  RYR+ D  G   +L+V   G +        G G    EV + +L+ S E
Sbjct:  200 RDPLSAIALVVHAALVSDTVGFRCTGIPPESDGAGXXXXXXXXGFAAPIRELPKSKFVPDGWDTGKGNVLLRYRK-DGVGSA-VLRVSLRGERC-------GEGSAREEVILSSLALSAE 310
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BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Match: A0A7S2A1F3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1F3_TRICV)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-6
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:   61 PLHGLALGLHCLMVDE--GFVCTGTDD--QAAVKGFAAPIRDVPQDKLVPQGWDKDP--------GAVSFRYRR 246
            PL  ++L LH  +  E  GF CTG  D  +    GFAAPIR++P+ K VP  WD++         GAVS RYR+
Sbjct:  141 PLSAVSLALHAALTTEVLGFKCTGVPDGGKGTGGGFAAPIRELPKGKFVPDNWDQNAKRAGGGTAGAVSIRYRK 214
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G3L0_ECTSI3.310e-5052.07PI31_Prot_N domain-containing protein n=2 Tax=Ecto... [more]
A0A7S1C882_9STRA4.690e-2248.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835ZEP6_9STRA2.040e-1045.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9ZHP1_9STRA2.040e-735.83Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2A1F3_TRICV2.880e-643.24Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2859825..2863424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue4.4e-43
Seed eggNOG ortholog2880.D7G3L0
EggNOG OGs2E9FZ@1,2SFU0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005060.1
Exons5
Model size647
Cds size645
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19651.1prot_S-ischiensis_contig8.19651.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2859825..2863422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817295.3076541-CDS-S-ischiensis_contig8:2859824..28598511622817295.3076541-CDS-S-ischiensis_contig8:2859824..2859851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2859825..2859851 +
1695741003.9048274-CDS-S-ischiensis_contig8:2859824..28598511695741003.9048274-CDS-S-ischiensis_contig8:2859824..2859851Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2859825..2859851 +
1622817295.3211517-CDS-S-ischiensis_contig8:2860138..28603171622817295.3211517-CDS-S-ischiensis_contig8:2860138..2860317Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2860139..2860317 +
1695741003.920351-CDS-S-ischiensis_contig8:2860138..28603171695741003.920351-CDS-S-ischiensis_contig8:2860138..2860317Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2860139..2860317 +
1622817295.3320544-CDS-S-ischiensis_contig8:2861388..28615721622817295.3320544-CDS-S-ischiensis_contig8:2861388..2861572Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2861389..2861572 +
1695741003.9353304-CDS-S-ischiensis_contig8:2861388..28615721695741003.9353304-CDS-S-ischiensis_contig8:2861388..2861572Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2861389..2861572 +
1622817295.3424768-CDS-S-ischiensis_contig8:2862498..28627191622817295.3424768-CDS-S-ischiensis_contig8:2862498..2862719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2862499..2862719 +
1695741003.9478762-CDS-S-ischiensis_contig8:2862498..28627191695741003.9478762-CDS-S-ischiensis_contig8:2862498..2862719Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2862499..2862719 +
1622817295.3526387-CDS-S-ischiensis_contig8:2863388..28634221622817295.3526387-CDS-S-ischiensis_contig8:2863388..2863422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2863389..2863422 +
1695741003.9595656-CDS-S-ischiensis_contig8:2863388..28634221695741003.9595656-CDS-S-ischiensis_contig8:2863388..2863422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2863389..2863422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19651.1

>prot_S-ischiensis_contig8.19651.1 ID=prot_S-ischiensis_contig8.19651.1|Name=mRNA_S-ischiensis_contig8.19651.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=215bp
GGVSTVLAKASRAGVEAPRQPLHGLALGLHCLMVDEGFVCTGTDDQAAVK
GFAAPIRDVPQDKLVPQGWDKDPGAVSFRYRRPDSPGKVYLLKVLAAGGQ
AIMHLAERGGGMESTEVDMGALSASEEFYEGLFTRFRESVMNPVAPQTKP
PAPAAAEETSTPPAGGVGAGPSRQPPPDREIPLPGPPEPSPYYDDDPLRV
GPPRFPGPAPIPGMD
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mRNA from alignment at S-ischiensis_contig8:2859825..2863424+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19651.1 ID=mRNA_S-ischiensis_contig8.19651.1|Name=mRNA_S-ischiensis_contig8.19651.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3600bp|location=Sequence derived from alignment at S-ischiensis_contig8:2859825..2863424+ (Schizocladia ischiensis KU_0333)
GGGGGCGTGAGCACTGTGCTGGCAAAGGTGTGGGGGGGGAACAGAGATGC
TTGAGGAGTATGCTGTTGTTGCCGCTCGGAGTGCGTGAGTCGCTTGCCAA
TGCCTTTGCTGCCCCGCCCCATCATCCCCTCTCCCCCATTTGCTCTTTGT
TCCTTGGCGAGCGTAGAGTACCCCTGAGGGGCAGGCGTGCGCGCACCGCC
CAGGGCAACACGCGCCTTGAGGCTTCCGGGAAAACCTTTCCCCCCCCCAG
GTGTTGAGAAACGCGTGGTGTACAGATTTGCAACCGCGCTCGTTCGCCCC
TCCTTCCTTCGCAGGCGTCCCGCGCGGGTGTCGAGGCGCCGCGGCAACCG
CTCCACGGCCTGGCCCTCGGCCTGCACTGCCTAATGGTAGACGAGGGCTT
TGTGTGCACGGGCACGGACGACCAGGCGGCGGTGAAGGGTTTTGCCGCCC
CCATCCGCGACGTGCCGCAGGACAAGCTGGTGCCCCAGGGCTGGTGAGAG
AGTTTTTTTTCTCGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTCCTTCTCTCCTTCTCCTCCTCCTCCTT
CTTTTTGTCCTCTTCTTCTTCTCCTCCTCCTTCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCACCACCACCACCACCACCTCCTCCTCCT
TGTTTTACTCGTACGCGTTTTTGCGTGCTCCGAGTACCTCGCTACAGTAC
CATCCGCACTGTCAGCGCGTCTCTTGTTTGTGTCGCTTGGGTGAGGTCTG
GCGTACGCAAGCGAGCACACACACACACACACACAGACAGACAGACACAC
ACATACGCACAGACTGAGGGCCCCCTCTCCCCAAAAAACAAACCCGGGCG
AGAAGGGCCACAGGGCGGCGTGTCCTTCCGCTACTTTGCGCGGCACGGAC
TACCTTAACCCTTGTACCCCTGGGGTCTGTATAGTCATAGGGTTTTAGTG
TGTGTCCAATTTACAAGGGGTAGAAGGGTTAAGGAGCTACACTTTGTGGG
TAGATGTAGCAACACACACACACACACACTCCTGGCACAAAACAAGCACA
GACAACCCCCAAAAACATAGAACAGTCTACATAGCGCCCATTGATGTCTA
GGCATGTACTCGTATATGTGTGTGTGTGTGTGTGTGTACTGATGTTGTGC
TGTCGTATTCCCGAGACCATTGACCACGCGCCTCGATCGAGACGGAGCAG
GCCCCCTCCCTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCCCCCTG
CATGTCTAATTGTTCCAAGTATAGCAATATCGATCCAGTTGGGCTTGTTC
GAACGACACAAACAAAGAAAGAAACAAACCACAAGCCGACACGCCGGCCG
AAAAGCAAACAAACAAACCGACATGAAACAGGGACAAGGACCCAGGGGCA
AAGAAACGCAATTCAAGCTGACACGCTGGCCAAACAAAAAAAACAAACCA
ACACACACAAACAGGGACAAGGACCCAGGGGCGGTGTCCTTCCGCTACCG
CCGCCCGGACTCCCCCGGCAAGGTCTACCTGCTTAAGGTCCTGGCCGCAG
GCGGGCAGGCCATCATGCACCTGGCGGAGAGGGGGGGGGGCATGGAGTCC
ACCGAGGTGGACATGGGGGCCCTCTCTGCCTCGGAGGAGTTCTACGAGGT
GAGAGCGGGGGCGTTTGGGAGGAGTTGTGTGGGGTGACAGGCGTTGTCCA
GGGGGGGGGATGGGGCCCACACCACCTCAGAGGAGTTCTACGAGGTGAGC
GGGGGCGTTTGGGAGGAGTTGTGTCGGGTGACAGGCGTTGTCCGGGGGGG
GGGGGCATGGGGCCCACACCACCTCGAGTGGAGAAATTGGGCAAGGTGAG
CGCCCGGGGACGTTTGAGAGGAGTTGCGTGGGGGTCAGAGGCGTTGCCTG
GAGAGGGGGGTGTGGGCGGTGGAGACGGAGGAGGCACTCTCCACCTCGGA
GGGTGGATGGGGCGTTGGAGAGATATATGTGGGGCGAAAGGTGCTCATTC
ATTGTCCAGAGGGGAGATTAGATGCTCCGTAGAGGTCAAGCCGGAAGGGC
GTCCTTCCGTGTTGGGGCCGGAACTCGCAACAGTCGGATCACCTCTATTT
TCCACTCGCTTCTTTTCTTTCCACACGAAATGTCGCCCTCCCTTGTCACG
GGCGAGGAACGAGGAGTTGTGTGAGGGTAGGGAGGATTTGGCACACGCCT
GCCCCAGGACCTCCTCGTCAGGGGTATTTTCGGGCAGACTTGTTTTCGTA
AGCACGGGGTATGACAGGTGCCCCAGGGCCGGCACCACGCCCTGCTTGCC
ATTGACTGGAGCGCTGGGGCGGTACTCGACTGTGCAAGGAATCTTGCCCA
AGAATAGAGATGCGCATAACGCAACACCTCTCTCTGTCACCGCCCTCCTT
CTCCTACCCCTCCCTCTCCCCTCCGCCTCTACCTCCCCCTCCTCCTCCTC
CTCCTCTCCCTCTTCCTTCTCCTCCTCGTTCTTCCCCCCCCCCCCCCCCC
CCTCCTCCCCCCCCCCGCCCCCCCCCTGCCCCCACCTGCCCCTCTCACCC
CCCCCGCATCCTCCTCCTCCCCAGGGCCTCTTCACCCGCTTCCGAGAGAG
CGTTATGAACCCTGTGGCGCCACAGACCAAGCCCCCAGCCCCAGCAGCAG
CGGAGGAGACCTCCACGCCGCCTGCCGGAGGGGTCGGGGCAGGGCCGTCC
CGCCAGCCCCCGCCTGACCGCGAGATCCCCCTGCCAGGCCCGCCGGAGCC
ATCCCCGTACTACGATGACGACCCGTTGCGGGTCGGCCCGCCAAGGTGAG
CAGTTCTGTTCATCCGATGCGGTGTTAACACCATTAGGAACGCTCGCGCA
AAATTTGCCCCCTTTTCCCTCCGCGCCCGGAGAAAGGTCGAACTTTGCAG
CGTACTCAAACTTTATCAGGCGTCACTCGCGACCTTAACCAATCAACGGC
CGGAACGACCGGAAACAGGACCCCAACATCCAGGGTGCGGACGAGGCTTG
GTGCCACGGTGCCACGAAAGGGGTGCGATATGGGTGAAATTTCTGGCTTT
TTCATCGGGACCCTAAAACAGCTCGATACTAGTCGATATCGGCGGCGCAC
ATTTTCGACGTTCCCCTCGATCCCTATATTTTTTAGTCTTTACGGTCGCG
CATAATTTCGACCTTTTCACTCGATTTGGGCGTTCGAAATGGTGTTAATG
TACTGTAGTTTTGATGCGGATGTTGTCAGGAGGAACGCCGCTAGACTAAG
TAGGTAGGTAACGTTAGACTAAAACCTGCGCAGGTTGCAAATAGTATGAC
GGCCTTCCCCCGTGATATCGTGAGCAATGGTCTCCGGGCTACTGCAAGCT
CATCACAATGGGCAGATACCACTGGAAGCACCCTTCCAAGTACGTACTTT
AAGTATCGAATCTGCAACCCTCAATGACCCCCCCCCCCCGCCTCCCCGCC
CCTGGGTAACCCAGGTTCCCTGGGCCCGCCCCCATCCCAGGCATGGACCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2859825..2863424+

>mRNA_S-ischiensis_contig8.19651.1 ID=mRNA_S-ischiensis_contig8.19651.1|Name=mRNA_S-ischiensis_contig8.19651.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1290bp|location=Sequence derived from alignment at S-ischiensis_contig8:2859825..2863424+ (Schizocladia ischiensis KU_0333)
GGGGGCGTGAGCACTGTGCTGGCAAAGGGGGGCGTGAGCACTGTGCTGGC
AAAGGCGTCCCGCGCGGGTGTCGAGGCGCCGCGGCAACCGCTCCACGGCC
TGGCCCTCGGCCTGCACTGCCTAATGGTAGACGAGGGCTTTGTGTGCACG
GGCACGGACGACCAGGCGGCGGTGAAGGGTTTTGCCGCCCCCATCCGCGA
CGTGCCGCAGGACAAGCTGGTGCCCCAGGGCTGGCGTCCCGCGCGGGTGT
CGAGGCGCCGCGGCAACCGCTCCACGGCCTGGCCCTCGGCCTGCACTGCC
TAATGGTAGACGAGGGCTTTGTGTGCACGGGCACGGACGACCAGGCGGCG
GTGAAGGGTTTTGCCGCCCCCATCCGCGACGTGCCGCAGGACAAGCTGGT
GCCCCAGGGCTGGGACAAGGACCCAGGGGCGGTGTCCTTCCGCTACCGCC
GCCCGGACTCCCCCGGCAAGGTCTACCTGCTTAAGGTCCTGGCCGCAGGC
GGGCAGGCCATCATGCACCTGGCGGAGAGGGGGGGGGGCATGGAGTCCAC
CGAGGTGGACATGGGGGCCCTCTCTGCCTCGGAGGAGTTCTACGAGGGAC
AAGGACCCAGGGGCGGTGTCCTTCCGCTACCGCCGCCCGGACTCCCCCGG
CAAGGTCTACCTGCTTAAGGTCCTGGCCGCAGGCGGGCAGGCCATCATGC
ACCTGGCGGAGAGGGGGGGGGGCATGGAGTCCACCGAGGTGGACATGGGG
GCCCTCTCTGCCTCGGAGGAGTTCTACGAGGGCCTCTTCACCCGCTTCCG
AGAGAGCGTTATGAACCCTGTGGCGCCACAGACCAAGCCCCCAGCCCCAG
CAGCAGCGGAGGAGACCTCCACGCCGCCTGCCGGAGGGGTCGGGGCAGGG
CCGTCCCGCCAGCCCCCGCCTGACCGCGAGATCCCCCTGCCAGGCCCGCC
GGAGCCATCCCCGTACTACGATGACGACCCGTTGCGGGTCGGCCCGCCAA
GGGCCTCTTCACCCGCTTCCGAGAGAGCGTTATGAACCCTGTGGCGCCAC
AGACCAAGCCCCCAGCCCCAGCAGCAGCGGAGGAGACCTCCACGCCGCCT
GCCGGAGGGGTCGGGGCAGGGCCGTCCCGCCAGCCCCCGCCTGACCGCGA
GATCCCCCTGCCAGGCCCGCCGGAGCCATCCCCGTACTACGATGACGACC
CGTTGCGGGTCGGCCCGCCAAGGTTCCCTGGGCCCGCCCCCATCCCAGGC
ATGGACGTTCCCTGGGCCCGCCCCCATCCCAGGCATGGAC
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