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Homology
BLAST of mRNA_S-ischiensis_contig8.19647.1 vs. uniprot
Match: D7G3J8_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3J8_ECTSI) HSP 1 Score: 114 bits (286), Expect = 3.610e-26 Identity = 76/176 (43.18%), Postives = 91/176 (51.70%), Query Frame = 1
Query: 10 EAELLIKRAVLIQGRCLGLGHPAVASSMSTMASLYLKQGRLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GLAATVLEGAGPDWLERVREGADWPARAPWEGLDWEGRVREAYVLVDRAYAIASSTRGPDHETSRDLLDALHSLRVLQWEGHGDPRPAPMAVLLAVQNGRWEP 531
+AE +IKRAVLIQGR LGL HPAVASSM MA LY +QGRL++ G A VL GAG DWL GR EA+ LVD+AY IASS G D +SR LL+AL +R Q +G GDP+PA A++ V GRW+P
Sbjct: 545 KAEEMIKRAVLIQGRHLGLRHPAVASSMRAMAELYRRQGRLAEAEPLFRRAIGIWELSRGGGGMDSDAIAALHGTAHCVLAGAGADWL---------------------GRFEEAFALVDQAYRIASSHPGND-ASSRLLLEALRMIRSRQRQGRGDPQPASAAIMEGVWTGRWDP 698
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-19_004920.1 |
| Exons | 4 |
| Model size | 565 |
| Cds size | 564 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817295.0332878-CDS-S-ischiensis_contig8:2835035..2835158 | 1622817295.0332878-CDS-S-ischiensis_contig8:2835035..2835158 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2835036..2835158 + |
| 1695741003.702837-CDS-S-ischiensis_contig8:2835035..2835158 | 1695741003.702837-CDS-S-ischiensis_contig8:2835035..2835158 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2835036..2835158 + |
| 1622817295.0462174-CDS-S-ischiensis_contig8:2836536..2836805 | 1622817295.0462174-CDS-S-ischiensis_contig8:2836536..2836805 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2836537..2836805 + |
| 1695741003.7164903-CDS-S-ischiensis_contig8:2836536..2836805 | 1695741003.7164903-CDS-S-ischiensis_contig8:2836536..2836805 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2836537..2836805 + |
| 1622817295.0592637-CDS-S-ischiensis_contig8:2837710..2837810 | 1622817295.0592637-CDS-S-ischiensis_contig8:2837710..2837810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2837711..2837810 + |
| 1695741003.7280035-CDS-S-ischiensis_contig8:2837710..2837810 | 1695741003.7280035-CDS-S-ischiensis_contig8:2837710..2837810 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2837711..2837810 + |
| 1622817295.0718677-CDS-S-ischiensis_contig8:2838232..2838304 | 1622817295.0718677-CDS-S-ischiensis_contig8:2838232..2838304 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2838233..2838304 + |
| 1695741003.7375603-CDS-S-ischiensis_contig8:2838232..2838304 | 1695741003.7375603-CDS-S-ischiensis_contig8:2838232..2838304 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig8 2838233..2838304 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig8.19647.1 >prot_S-ischiensis_contig8.19647.1 ID=prot_S-ischiensis_contig8.19647.1|Name=mRNA_S-ischiensis_contig8.19647.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=188bp
MAAEAELLIKRAVLIQGRCLGLGHPAVASSMSTMASLYLKQGRLSKAEPL
FRRAIGIWEKALGTSHPVLAPALHGLAATVLEGAGPDWLERVREGADWPA
RAPWEGLDWEGRVREAYVLVDRAYAIASSTRGPDHETSRDLLDALHSLRV
LQWEGHGDPRPAPMAVLLAVQNGRWEPPPPPPSPPPPP back to topmRNA from alignment at S-ischiensis_contig8:2835036..2838304+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig8.19647.1 ID=mRNA_S-ischiensis_contig8.19647.1|Name=mRNA_S-ischiensis_contig8.19647.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3269bp|location=Sequence derived from alignment at S-ischiensis_contig8:2835036..2838304+ (Schizocladia ischiensis KU_0333)
ATGGCGGCGGAGGCAGAGCTGCTGATAAAGCGGGCAGTGCTGATTCAAGG
CCGGTGCCTTGGCTTGGGGCACCCGGCCGTGGCTTCGAGCATGTCCACAA
TGGCAAGCCTTTACCTCAAACAGGTGGGTCGGGGGAGGGGGGGCCAGTAC
GCATCCGGGGGCATTGCCGGGGCCACGCGTGATCTTCCCTCAGACCGGTG
AATAGCTTTTTTACACCCGCATGAGTAGGCAAATCTATTCTTTTGCGCTC
GCTCGTTTGTCTCCTTGCCAAGAACCTATTTATATGTGTGCGTCTACCGC
CGCAGCCGGCCCATCGTGCTGCATAAAAAATCACGTGGAATCGCACAGCG
GGCGGCCGGCGCGATGTGGCTTGACGTGATGACGTGATGTGATGTCAGGC
TGCAGCACAATAGAGAGCGACGTGATGTGATACGATACGATGTGATGTGA
CGTGATGTGATGTCAGACTGCAGCACAATAGGGAGCGATGTGATGCGATG
TGATACGATGTTATGTGATGTGGCTTTGATTTGACGTGATGCGATGTCAG
ACTGCAGCACAACAGAGAGCGATGTGATGCGATGTGATGTGATACGATCT
GGTGTGATGTGGCTTGATGTGACGTGATGCGATGTCAGACTGCACCACAA
TAGGGAGCGATGTGATGCGATGTGATGTGATACGATGTGATGTGATGTGG
CTTGACGTGACGTGATGCGATGTCAGACTGCAGCACAATCGAGACCGATG
TGATGCGATATGATGTGATACGATGTAATGTGATGTGGCTTGACGTGACG
CGGTGTCATGTCAGACTGCAGCACAATAGAGAGCGATGCGATGTGATGTG
ATGTCATACGATGTGATATGATGTGGTGTGATATGGCTAGACGTGACGCG
GTGTGATGTCAGACTGCAGCACAATAGAGAGCGATGTGATGTGATGTGAT
ATCATACGATGTGATGTGATGTGGCTTTGATGTGACGTGATGCGATGTCA
GACTGCAGCACAACAGAGAGCGATGTGATGCGATGTGATGTGATGTGATG
TGATACGATCTGGTGTGATGATGTGGCTTGACGTGACGTGATGCGATGTC
AGACTGCAGCACAACAGAGAGCGATGTGATGCGATGTGCTGTGATGTGAT
GTGATGTGATGTGGCTTTGATGTGACGTGATCTGATGTCCGACTGCAGCG
CAATAGGGAGCGATGTGATGTGATGTGATGTGATACGATGTGATATGATG
TGGCTTGACGTGAAGTGATGTCATGTCAGACTGCAGCACAATAGAGACCG
ATCTGATGCGATGTGATGTGATGTGGCTTGACGTGACGCGGTGCGATGTC
AGACTGCAGTATTATAGAGAGCAATGCGATGCGACGTGATACGATACGAT
GTGATGTGATGTGATGTGGCTTGGCGCAACTTGGTGTTTTGTCTTGAGTG
GCGTGGCCGCCTGCGCCTCACCCTGCGTTTTTCCTGTCAATACTGGTTCA
GGGACGCCTCTCGAAGGCAGAGCCCCTCTTCCGGCGCGCCATCGGGATCT
GGGAGAAGGCGCTCGGGACCTCGCACCCCGTCCTCGCGCCCGCGCTGCAC
GGCCTGGCGGCCACCGTGCTGGAGGGGGCGGGCCCCGACTGGCTGGAGAG
GGTCCGCGAGGGCGCTGATTGGCCGGCGAGGGCCCCCTGGGAGGGCCTGG
ATTGGGAGGGGAGGGTCCGGGAGGCATACGTGCTGGTGGATCGCGCGTAT
GCTATCGCGTCTTCTACGAGGTGGGTGGGCGGGGACGGTCGAAACTGTGT
GAGTTCCTTTTGTTTTCTGCCTTTTTTTGACTCGTGCGTTCGTTTGAACC
CCATTGCGTGTCGAAGGAGAAGGAAGAGAGTTTTACGAATGTTGTTGCTT
CCAACTATTGCGATAAGTACCGAAGTATACGCGCGAAGAAATAGAGGGAA
GTTAAGGGCGAAACACATAGGTTTAGTGATGAGATACTTTGGACAGAACC
AATATCCTAAAATGGTCTGCTCCAATGGTCCTCGGTGGTCGACCTGCTGG
TTTGTCATCCCTCGGCCAATTCCATTGATCCTTTTGTGAACGAACGTTGC
CGACCGCCGCTGGTCGGACATCACCCCTCCTCAGTCAATGTGATTGCTGT
GCAGTTGCAGTTGTCGCGATGGTCTGCTACATGTCATTGGTCGGTCGTCG
CTCGCTCGGCCAATCCCATTGGTCCTTTGTCACAAGGGATGCATTTCATT
GGTCATTGGTCACAACTGGTACAGAAGCAAGTTTTCGCCGCGGGACGGGT
TGTGCCGTCTCGTCACGGCTCGGATGGGTCGGGTCGAGCCGCGGCGAGAC
CGCAGGGTAACCATGGTACAAAAGCGCGTTTTTTTTTGCCCAAATAGCGA
TTTGCCCAAATAGTGAATATCGATTGCCCTGTTGCTCGGCCCATGTGACG
TTGTGATACGAAAACTATAGCGCAAATGAATGTACTCATCGAGCTCTTTC
ACGTGTCAAAATTTCGCGGCCATCCGATGCGTCCTCGATGGGGCGGCCCG
GGCAAAACTGGTGCTCAAACATAGCGATCGCACTTTTGTACCATGGCTAC
CGCAGGGCCGGGTCCCAGGTCCTACAACTCACCCCCACCCCCAACCAACC
CCCCCCCCAACCCCGTACAATGCAGGGGCCCGGACCACGAGACCTCGCGT
GACCTGCTGGATGCCTTGCACTCGCTGAGAGTCCTACAGTGGGAGGGTCA
CGGAGACCCCCGGCCAGCCCCCATGGTGTGTGTGTGTGTGTGTGTGTGCG
CGTGCGTGTGTGCGTGCGTGTGCGTGTGTGCGTGCGTGCGTGTGCGTGTG
GGTGTGGGTGTGGGTGTGGGTGTGGGTGTGTTGGGGGGAATGTGCGCCCC
AAAATACGAGGTCTTCAGTGACGTGGCCTGCACCTTGCCCTGTGTTGTTC
CTGTTAATACTGCCATCTGGCATCACGTCACATCATGATGCCTCGTGTAT
TCTCTGGGTGCCTTGCTTTCCCTGAGAGTCCTCCAGTGGGATGGCCCCGG
GGGGAGATCCGCGGCCGGCACCTAATGGTGTGTGTGTGTGTGACGTGATG
TGTGCACACATGCTTTCTCAACTATGATGTCTGTAGCTTTTGACACACGC
TGAATCACGACTTGCCTGCATACCTACCCACCCGCCCATCCCCCCAGGCG
GTGTTGCTCGCGGTCCAAAACGGACGCTGGGAGCCGCCGCCGCCGCCGCC
GTCGCCACCACCACCACCA back to topCoding sequence (CDS) from alignment at S-ischiensis_contig8:2835036..2838304+ >mRNA_S-ischiensis_contig8.19647.1 ID=mRNA_S-ischiensis_contig8.19647.1|Name=mRNA_S-ischiensis_contig8.19647.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1128bp|location=Sequence derived from alignment at S-ischiensis_contig8:2835036..2838304+ (Schizocladia ischiensis KU_0333)
ATGGCGGCGGAGGCAGAGCTGCTGATAAAGCGGGCAGTGCTGATTCAAGG
CCGGTGCCTTGGCTTGGGGCACCCGGCCGTGGCTTCGAGCATGTCCACAA
TGGCAAGCCTTTACCTCAAACAGATGGCGGCGGAGGCAGAGCTGCTGATA
AAGCGGGCAGTGCTGATTCAAGGCCGGTGCCTTGGCTTGGGGCACCCGGC
CGTGGCTTCGAGCATGTCCACAATGGCAAGCCTTTACCTCAAACAGGGAC
GCCTCTCGAAGGCAGAGCCCCTCTTCCGGCGCGCCATCGGGATCTGGGAG
AAGGCGCTCGGGACCTCGCACCCCGTCCTCGCGCCCGCGCTGCACGGCCT
GGCGGCCACCGTGCTGGAGGGGGCGGGCCCCGACTGGCTGGAGAGGGTCC
GCGAGGGCGCTGATTGGCCGGCGAGGGCCCCCTGGGAGGGCCTGGATTGG
GAGGGGAGGGTCCGGGAGGCATACGTGCTGGTGGATCGCGCGTATGCTAT
CGCGTCTTCTACGAGGGACGCCTCTCGAAGGCAGAGCCCCTCTTCCGGCG
CGCCATCGGGATCTGGGAGAAGGCGCTCGGGACCTCGCACCCCGTCCTCG
CGCCCGCGCTGCACGGCCTGGCGGCCACCGTGCTGGAGGGGGCGGGCCCC
GACTGGCTGGAGAGGGTCCGCGAGGGCGCTGATTGGCCGGCGAGGGCCCC
CTGGGAGGGCCTGGATTGGGAGGGGAGGGTCCGGGAGGCATACGTGCTGG
TGGATCGCGCGTATGCTATCGCGTCTTCTACGAGGGGCCCGGACCACGAG
ACCTCGCGTGACCTGCTGGATGCCTTGCACTCGCTGAGAGTCCTACAGTG
GGAGGGTCACGGAGACCCCCGGCCAGCCCCCATGGGGCCCGGACCACGAG
ACCTCGCGTGACCTGCTGGATGCCTTGCACTCGCTGAGAGTCCTACAGTG
GGAGGGTCACGGAGACCCCCGGCCAGCCCCCATGGCGGTGTTGCTCGCGG
TCCAAAACGGACGCTGGGAGCCGCCGCCGCCGCCGCCGTCGCCACCACCA
CCACCAGCGGTGTTGCTCGCGGTCCAAAACGGACGCTGGGAGCCGCCGCC
GCCGCCGCCGTCGCCACCACCACCACCA back to top
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