mRNA_S-ischiensis_contig8.19646.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19646.1
Unique NamemRNA_S-ischiensis_contig8.19646.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2833758..2834828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size340
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.979047-CDS-S-ischiensis_contig8:2833757..28338831622817294.979047-CDS-S-ischiensis_contig8:2833757..2833883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2833758..2833883 +
1695741003.6773882-CDS-S-ischiensis_contig8:2833757..28338831695741003.6773882-CDS-S-ischiensis_contig8:2833757..2833883Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2833758..2833883 +
1622817294.9932647-CDS-S-ischiensis_contig8:2834616..28348261622817294.9932647-CDS-S-ischiensis_contig8:2834616..2834826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2834617..2834826 +
1695741003.692736-CDS-S-ischiensis_contig8:2834616..28348261695741003.692736-CDS-S-ischiensis_contig8:2834616..2834826Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2834617..2834826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19646.1prot_S-ischiensis_contig8.19646.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2833758..2834826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19646.1

>prot_S-ischiensis_contig8.19646.1 ID=prot_S-ischiensis_contig8.19646.1|Name=mRNA_S-ischiensis_contig8.19646.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
LAVASTLHVLALVLVSQGEMAEAEQELTRSLAIREAHLEGTQHVDLAKTL
RDLAGVVRHSDPPRAEHLYRSALVAFEGSFGKNCLASATTMAALGALLGD
LAAAPRMRARER
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mRNA from alignment at S-ischiensis_contig8:2833758..2834828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19646.1 ID=mRNA_S-ischiensis_contig8.19646.1|Name=mRNA_S-ischiensis_contig8.19646.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1071bp|location=Sequence derived from alignment at S-ischiensis_contig8:2833758..2834828+ (Schizocladia ischiensis KU_0333)
CTCGCAGTCGCCAGCACGCTGCATGTGCTGGCGCTGGTGCTAGTGAGCCA
GGGGGAGATGGCTGAGGCGGAGCAGGAGCTGACCCGGAGCCTGGCTATCC
GCGAAGCACACTTGGAGGGGACGCAGGTAGGTCACCCTTGTGCCCCTGCT
AAATTGAACCTACACACTAAACCCTATACTTATATGGACCGCAGGGGTAA
AATGGTTCAGCAAACAGGGCAGGCTTTCACTACGCAGTAGCTTAGTTGGC
TGGCTAGCTTAGCACCGCCAGGAATTCTCGCAGACAACGTGGCAGCTTCA
TGGCAGTTACACAACAGTGGCACGGCAAAGAACGGAGAGGCAGCGGCCGT
ACCCTGAGGAAACAGTGCTCCTGTCCCATGGCGTCGCCGCTGTGGGGTGC
TTGGTCAACGATAACTCGGCGATGACAAGCCTGCTGTGGAGAGCACACAG
TCTGGTCAATCATTGGTCGAATTGCGGCGGCAGGCGACTCAGAAGTACCC
CCCCTCCCGCTTCCCTCCTGCTCCCCACCCGGCCCGTGCGGTGATGTGTG
TGTATGTGCGTGTGTGCGTGCGCCGTGCGCGTATGCATGTTTGTACGTGT
GCGTGCACGTTGGTGCATGCGTGCGTGCGTGTGTGCGGGCGCACGCCTGG
CCCATGTGGTGCTCGGCGTGTCCATGTGTGTGTACGGTATGCATGTGTGA
CATCCCGTGCGTATGCATGTGCATGTGTGTGTGCGTGTGTGCACGTCCAT
GTGTGTATGCCTGCCTGCGTGCGCGTGTGTGTGCATGCACGCGTATCCAT
GCTTGTATGTATGCATGTGTGCGCATGCGTGCGTCTGCGTCTGGGGCCCA
AACGAGAAGCATGTGGACCTGGCCAAGACCCTGCGCGATCTGGCAGGCGT
TGTCCGCCACTCCGACCCGCCGCGGGCGGAGCACCTCTACCGCAGCGCCC
TCGTCGCCTTTGAGGGAAGCTTTGGGAAGAACTGCCTCGCCAGCGCCACC
ACCATGGCCGCACTGGGGGCTCTGCTGGGGGACCTAGCGGCAGCACCGAG
GATGAGGGCCAGAGAGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2833758..2834828+

>mRNA_S-ischiensis_contig8.19646.1 ID=mRNA_S-ischiensis_contig8.19646.1|Name=mRNA_S-ischiensis_contig8.19646.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig8:2833758..2834828+ (Schizocladia ischiensis KU_0333)
CTCGCAGTCGCCAGCACGCTGCATGTGCTGGCGCTGGTGCTAGTGAGCCA
GGGGGAGATGGCTGAGGCGGAGCAGGAGCTGACCCGGAGCCTGGCTATCC
GCGAAGCACACTTGGAGGGGACGCAGCTCGCAGTCGCCAGCACGCTGCAT
GTGCTGGCGCTGGTGCTAGTGAGCCAGGGGGAGATGGCTGAGGCGGAGCA
GGAGCTGACCCGGAGCCTGGCTATCCGCGAAGCACACTTGGAGGGGACGC
AGCATGTGGACCTGGCCAAGACCCTGCGCGATCTGGCAGGCGTTGTCCGC
CACTCCGACCCGCCGCGGGCGGAGCACCTCTACCGCAGCGCCCTCGTCGC
CTTTGAGGGAAGCTTTGGGAAGAACTGCCTCGCCAGCGCCACCACCATGG
CCGCACTGGGGGCTCTGCTGGGGGACCTAGCGGCAGCACCGAGGATGAGG
GCCAGAGAGAGGCATGTGGACCTGGCCAAGACCCTGCGCGATCTGGCAGG
CGTTGTCCGCCACTCCGACCCGCCGCGGGCGGAGCACCTCTACCGCAGCG
CCCTCGTCGCCTTTGAGGGAAGCTTTGGGAAGAACTGCCTCGCCAGCGCC
ACCACCATGGCCGCACTGGGGGCTCTGCTGGGGGACCTAGCGGCAGCACC
GAGGATGAGGGCCAGAGAGAGG
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