mRNA_S-ischiensis_contig8.19641.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19641.1
Unique NamemRNA_S-ischiensis_contig8.19641.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19641.1 vs. uniprot
Match: L1K179_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1K179_GUITC)

HSP 1 Score: 65.5 bits (158), Expect = 2.340e-8
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  203 QVVDAAERVLRQDRDARRLLGKDIVCGQPFSQGYSSATVNGRKTTSVSLQLPTRGSLREGTLSVQASTSGEADGEVNLERLVLRAAGGQV 472
            +VV+ AER +R +  A R+LG +I  G P SQ +SS+++NG  T  ++L+LP RG+   GTL V  S +  + G ++L+R +++   G +
Sbjct:  134 RVVEVAERRVRMNAGATRILGSEISVGAPVSQSFSSSSINGVSTKQIALRLPVRGTSSSGTLIVDGSIN--SSGSISLKRCLVQTPTGSL 221
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BLAST of mRNA_S-ischiensis_contig8.19641.1 vs. uniprot
Match: A0A7S0QEA7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEA7_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 2.010e-7
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 2 
Query:  203 QVVDAAERVLRQDRDARRLLGKDIVCGQPFSQGYSSATVNGRKTTSVSLQLPTRGSLREGTLSVQASTSGEADGEVNLERLVLRAAGGQVLSVPTTGRGTGSGGR 517
            ++ D   R + ++       GKDI    PFSQ YSS+++NG+   S+SL++P RG    G ++V AS  G+    V L R +++  G +++ + T G G G  GR
Sbjct:  160 RIRDLTTRTVSRNSQVIAEFGKDIEIDSPFSQAYSSSSINGKTNKSISLRMPIRGGSTSGIVAVDASIDGQDI--VQLSRCIVQVRG-KIIDIETRGGGGGGDGR 261
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
L1K179_GUITC2.340e-837.78Uncharacterized protein n=3 Tax=Guillardia theta T... [more]
A0A7S0QEA7_9CRYP2.010e-734.29Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2750698..2752993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size1479
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19641.1prot_S-ischiensis_contig8.19641.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2750780..2752124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.280415-UTR-S-ischiensis_contig8:2750697..27507791622817294.280415-UTR-S-ischiensis_contig8:2750697..2750779Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2750698..2750779 +
1695741003.0659404-UTR-S-ischiensis_contig8:2750697..27507791695741003.0659404-UTR-S-ischiensis_contig8:2750697..2750779Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2750698..2750779 +
1622817294.317312-UTR-S-ischiensis_contig8:2752124..27529931622817294.317312-UTR-S-ischiensis_contig8:2752124..2752993Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2752125..2752993 +
1695741003.0986912-UTR-S-ischiensis_contig8:2752124..27529931695741003.0986912-UTR-S-ischiensis_contig8:2752124..2752993Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2752125..2752993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817294.291323-CDS-S-ischiensis_contig8:2750779..27510761622817294.291323-CDS-S-ischiensis_contig8:2750779..2751076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2750780..2751076 +
1695741003.0763094-CDS-S-ischiensis_contig8:2750779..27510761695741003.0763094-CDS-S-ischiensis_contig8:2750779..2751076Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2750780..2751076 +
1622817294.3036406-CDS-S-ischiensis_contig8:2751893..27521241622817294.3036406-CDS-S-ischiensis_contig8:2751893..2752124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2751894..2752124 +
1695741003.0872428-CDS-S-ischiensis_contig8:2751893..27521241695741003.0872428-CDS-S-ischiensis_contig8:2751893..2752124Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2751894..2752124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19641.1

>prot_S-ischiensis_contig8.19641.1 ID=prot_S-ischiensis_contig8.19641.1|Name=mRNA_S-ischiensis_contig8.19641.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=176bp
MFCSCFVVTVSWTPACLFSPARLFTSLLARKNCFFVPAAGQVVDAAERVL
RQDRDARRLLGKDIVCGQPFSQGYSSATVNGRKTTSVSLQLPTRGSLREG
TLSVQASTSGEADGEVNLERLVLRAAGGQVLSVPTTGRGTGSGGRTRGGR
GGRGGGGAAPDPDDETIIDVEYRDK*
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mRNA from alignment at S-ischiensis_contig8:2750698..2752993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19641.1 ID=mRNA_S-ischiensis_contig8.19641.1|Name=mRNA_S-ischiensis_contig8.19641.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2296bp|location=Sequence derived from alignment at S-ischiensis_contig8:2750698..2752993+ (Schizocladia ischiensis KU_0333)
CAACTACGTCTACCGCATCTGTAGCGAGGGAGGAGAAAGCGGGCGACGAT
CGTCGTCTCCTAGATCTACTTAGCTGTCGAAAATGTTTTGCAGCTGTTTC
GTAGTAACTGTTTCGTGGACGCCCGCCTGCCTTTTCTCTCCTGCTCGGTT
GTTTACAAGTCTTCTTGCAAGAAAAAACTGTTTCTTCGTGCCTGCTGCCG
GGCAGGTGGTGGACGCGGCGGAAAGAGTCCTCCGGCAGGACAGGGACGCC
AGGCGCCTGTTAGGGAAGGACATAGTCTGCGGGCAGCCCTTCAGCCAGGG
GTACTCCAGCGCCACCGTCAACGGGCGCAAGACCACCTCTGTCAGCCTGC
AGCTGCCCACGCGGGGCTCGCTGAGGGAGGTGAGGGCGAGAAAAGTACTT
GGAGATTTCACTGCTGCTGTGGGTAGCAGTCGGCACAGTAGGGTACCTAC
ATGCTGTGTGTTTGGGTAGGGTGTGTGCTGCCATGTACGTATGTACTGTA
CCTCGAAGTACTTCGAAGTACATACGAAGTAAGTAGCAGTAGGACTTGGG
GCTGTCGGCGATGCACGCAAGGTTGTGTCGCAGGGCAAGCCATCCAGTGC
AGAGCACAGAGTGGGGCATAGTAGTAGCAATAGTACTTGTGCTTCCGAAG
TAGTAGTACTGCACTCACAGCTGTAGAGCTCTATGTATATATGTAGTGGT
GTCAACAGGAAAAACAGAAGCGGAAAACAAACCTACAGTAGCAGTGGCGT
GTACTTCGCACACAGTAGTGGTCGTACCGCACTGCACAGGGAAAAAACAC
GTGGCGAGGTGCGGCCCACGTCACGAAAGGCCTCAACAGCGGCCTTTTCC
GTAGCCCGCCTGGGAATGCCAAGTTCTTCGGAAGTACTGTACTCTTAGTA
CACCTACAGTACAGTAGGGCACCTAAGCTACGAGTATATGCCCTGCTAGA
GCACGAGTACTCGAGTACACTCCTACTTCAGTACTTACGCGCATACTAAT
GCACACTACTGCACAGTACAAGTACTTCCACCATGCCATCAACTACCCCT
GCACCACGTCAGGCGGCAACTACTAGTACGTAGTAATAGTAGGTACTTCC
GCCACTGTCCTACACGTTCCCCCCCACACACCACTCCTCACTCCACAGCT
CACTCGCGCACTCACGCCGACGCGACGGCGGCGCCCCCTGTGGCAGGGCA
CACTCTCTGTGCAGGCATCCACAAGTGGCGAGGCAGACGGCGAGGTAAAC
CTGGAACGTCTCGTCCTGCGGGCGGCCGGGGGGCAGGTGTTGTCGGTGCC
GACCACAGGCCGTGGAACGGGCAGCGGCGGGCGCACCCGTGGTGGACGCG
GCGGCCGCGGCGGCGGTGGGGCTGCTCCAGACCCGGACGACGAAACGATA
ATTGACGTGGAGTATCGGGACAAGTGATGAATGGGTTCATGCCGGTCGGT
CGGTCGGGCGGTTGGTCGGGCGGTCGGTCGCCCGTGAGATATATTTCAAG
ATTGTGTTTTTCAAGTTTGAGCCGACCCTGACAGCTTCTTTGCTTGGTTT
CTATGCCCCTGCGGGTGAAAAGAAGGGTTTCTGGTGAGGTCTCCACCTTA
AGTAGGTTGTTGGGACGGGGCCCGGAGCTCGCACACCATCACAATAGTTC
AAAAAGGACGGGCAGCACATCACCACGCCCTTGGGCTAATAAGCCGTACA
GCAGGCGTTCGCAGTACAAGTAGTACTTCGAAGTACAGCGCTACGTGAGG
ACAAACAGTTACTGTCGCTGTAGCCTGCCATTGTTGTGCGAGGGTCGAGG
GCGGAACGGCGGACGGAAAATGTCCTCGCCCCACGCCGGGCCCCACGGCC
GGCCGGCGAAGACGATGAAACGAGCGATCATTGTCGCTCCAGATGCACCA
CCCCCGGGGGGGGCGCTCGGGTCGCCCCCCCGGAAGCCCCCGGGACCCGG
GGCCGCCCGGGGGCCGCCGGGACGCGGCTGCCGGTCACGTCCAGCTCACG
CTCCCGGAGTGCATGCTGTAGGTACTTGGATCGCTTTTTTTGTAAATAGG
CACACCCTTGAACCCCCAAGGATGGAATCATGGATGCGATAGATCCTGCG
AGCGAGCGAGTGGGCATGCCCAAGGTTCTGCAAGTCAGACCGGAAGTCAG
TGCACCAATTGCGTCCGCCCGTTCGTCGCTGCGGGCCCACGCGGTCGAAT
CTCCGAATCCCCAACGGGCCCGCCGCCGCGAGCCGTCCACTCCACGTCCG
GCTCGGACTGTAAAGCCCACCGGCGTTTGGCGGGCTTGTACTTATC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2750698..2752993+

>mRNA_S-ischiensis_contig8.19641.1 ID=mRNA_S-ischiensis_contig8.19641.1|Name=mRNA_S-ischiensis_contig8.19641.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1056bp|location=Sequence derived from alignment at S-ischiensis_contig8:2750698..2752993+ (Schizocladia ischiensis KU_0333)
ATGTTTTGCAGCTGTTTCGTAGTAACTGTTTCGTGGACGCCCGCCTGCCT
TTTCTCTCCTGCTCGGTTGTTTACAAGTCTTCTTGCAAGAAAAAACTGTT
TCTTCGTGCCTGCTGCCGGGCAGGTGGTGGACGCGGCGGAAAGAGTCCTC
CGGCAGGACAGGGACGCCAGGCGCCTGTTAGGGAAGGACATAGTCTGCGG
GCAGCCCTTCAGCCAGGGGTACTCCAGCGCCACCGTCAACGGGCGCAAGA
CCACCTCTGTCAGCCTGCAGCTGCCCACGCGGGGCTCGCTGAGGGAGATG
TTTTGCAGCTGTTTCGTAGTAACTGTTTCGTGGACGCCCGCCTGCCTTTT
CTCTCCTGCTCGGTTGTTTACAAGTCTTCTTGCAAGAAAAAACTGTTTCT
TCGTGCCTGCTGCCGGGCAGGTGGTGGACGCGGCGGAAAGAGTCCTCCGG
CAGGACAGGGACGCCAGGCGCCTGTTAGGGAAGGACATAGTCTGCGGGCA
GCCCTTCAGCCAGGGGTACTCCAGCGCCACCGTCAACGGGCGCAAGACCA
CCTCTGTCAGCCTGCAGCTGCCCACGCGGGGCTCGCTGAGGGAGGGCACA
CTCTCTGTGCAGGCATCCACAAGTGGCGAGGCAGACGGCGAGGTAAACCT
GGAACGTCTCGTCCTGCGGGCGGCCGGGGGGCAGGTGTTGTCGGTGCCGA
CCACAGGCCGTGGAACGGGCAGCGGCGGGCGCACCCGTGGTGGACGCGGC
GGCCGCGGCGGCGGTGGGGCTGCTCCAGACCCGGACGACGAAACGATAAT
TGACGTGGAGTATCGGGACAAGTGAGGCACACTCTCTGTGCAGGCATCCA
CAAGTGGCGAGGCAGACGGCGAGGTAAACCTGGAACGTCTCGTCCTGCGG
GCGGCCGGGGGGCAGGTGTTGTCGGTGCCGACCACAGGCCGTGGAACGGG
CAGCGGCGGGCGCACCCGTGGTGGACGCGGCGGCCGCGGCGGCGGTGGGG
CTGCTCCAGACCCGGACGACGAAACGATAATTGACGTGGAGTATCGGGAC
AAGTGA
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