mRNA_S-ischiensis_contig8.19640.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19640.1
Unique NamemRNA_S-ischiensis_contig8.19640.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2746901..2747634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.7585263-CDS-S-ischiensis_contig8:2746900..27470911622817261.7585263-CDS-S-ischiensis_contig8:2746900..2747091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2746901..2747091 +
1695740978.0305326-CDS-S-ischiensis_contig8:2746900..27470911695740978.0305326-CDS-S-ischiensis_contig8:2746900..2747091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2746901..2747091 +
1622817261.772202-CDS-S-ischiensis_contig8:2747572..27476331622817261.772202-CDS-S-ischiensis_contig8:2747572..2747633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2747573..2747633 +
1695740978.045606-CDS-S-ischiensis_contig8:2747572..27476331695740978.045606-CDS-S-ischiensis_contig8:2747572..2747633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2747573..2747633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19640.1prot_S-ischiensis_contig8.19640.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2746901..2747633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19640.1

>prot_S-ischiensis_contig8.19640.1 ID=prot_S-ischiensis_contig8.19640.1|Name=mRNA_S-ischiensis_contig8.19640.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=84bp
VKLKLGAALPLATQTATRMLVSGVRLQMLLLLGSLARRGWGFASNACVAP
MRTVATRRARPVARSRATCGQLPLGLQGRGVRCS
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mRNA from alignment at S-ischiensis_contig8:2746901..2747634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19640.1 ID=mRNA_S-ischiensis_contig8.19640.1|Name=mRNA_S-ischiensis_contig8.19640.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=734bp|location=Sequence derived from alignment at S-ischiensis_contig8:2746901..2747634+ (Schizocladia ischiensis KU_0333)
GTGAAGCTGAAGCTGGGTGCCGCCCTGCCCCTTGCAACACAAACGGCAAC
AAGGATGCTTGTGAGTGGCGTTCGCCTACAGATGTTGCTGTTGCTGGGGT
CCCTGGCCCGGAGGGGCTGGGGTTTCGCGAGCAACGCCTGTGTGGCGCCC
ATGAGAACTGTCGCAACGAGACGAGCACGGCCGGTGGCTCGGTGAGTTTG
AAAATAAAGCCCTCCGCCCCCGTGATTGTGGACGGCGTGCCTGGCGTCCT
CTGCCACCTGCCTGTGTACCTACTTGTCATCCTCTTGCTAGATTGTCCAC
AGGTGCCAAAGGAGTGACTTGAACAGCACGTTGCTCTCGGGCCCTTGGAG
CTACTTCAAACATAGTCGCAGTACAGGAGCGGGACTGCAGCGGTGTACCC
CTCGGCAAGCCTCGGGTGCACAGCCTGTTACAATTGTAGGGCCTGGAGAT
GCGTTTCCCTTTGGAGGCGTGTACCTAAAGCCCAGCCGCCCCTTGCGAAA
GTGCACCCGCGTCAAGAAACTCACTCTGTCGCTACAATGTTGCGGCCTGG
CGGGAGCAAAGGGTTCACCCTTTGAGGACGATTGCATAGCACATCATACC
TAGGGATTTAGTATGGCATCGGTGCGCCGTAGTTCTCAAAGTGTTAAGAC
GCCGTTTGCCCCCGGCCGCCAGCAGCAGGGCCACGTGTGGGCAACTCCCA
CTGGGCCTACAAGGCCGGGGTGTTCGATGCAGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2746901..2747634+

>mRNA_S-ischiensis_contig8.19640.1 ID=mRNA_S-ischiensis_contig8.19640.1|Name=mRNA_S-ischiensis_contig8.19640.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=504bp|location=Sequence derived from alignment at S-ischiensis_contig8:2746901..2747634+ (Schizocladia ischiensis KU_0333)
GTGAAGCTGAAGCTGGGTGCCGCCCTGCCCCTTGCAACACAAACGGCAAC
AAGGATGCTTGTGAGTGGCGTTCGCCTACAGATGTTGCTGTTGCTGGGGT
CCCTGGCCCGGAGGGGCTGGGGTTTCGCGAGCAACGCCTGTGTGGCGCCC
ATGAGAACTGTCGCAACGAGACGAGCACGGCCGGTGGCTCGGTGAAGCTG
AAGCTGGGTGCCGCCCTGCCCCTTGCAACACAAACGGCAACAAGGATGCT
TGTGAGTGGCGTTCGCCTACAGATGTTGCTGTTGCTGGGGTCCCTGGCCC
GGAGGGGCTGGGGTTTCGCGAGCAACGCCTGTGTGGCGCCCATGAGAACT
GTCGCAACGAGACGAGCACGGCCGGTGGCTCGCAGCAGGGCCACGTGTGG
GCAACTCCCACTGGGCCTACAAGGCCGGGGTGTTCGATGCAGCCAGCAGG
GCCACGTGTGGGCAACTCCCACTGGGCCTACAAGGCCGGGGTGTTCGATG
CAGC
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