mRNA_S-ischiensis_contig8.19639.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19639.1
Unique NamemRNA_S-ischiensis_contig8.19639.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2735225..2735916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19639.1prot_S-ischiensis_contig8.19639.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2735312..2735713 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.0931258-UTR-S-ischiensis_contig8:2735224..27353111622817268.0931258-UTR-S-ischiensis_contig8:2735224..2735311Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2735225..2735311 +
1695740981.8280556-UTR-S-ischiensis_contig8:2735224..27353111695740981.8280556-UTR-S-ischiensis_contig8:2735224..2735311Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2735225..2735311 +
1622817268.1160762-UTR-S-ischiensis_contig8:2735713..27359161622817268.1160762-UTR-S-ischiensis_contig8:2735713..2735916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2735714..2735916 +
1695740981.8538773-UTR-S-ischiensis_contig8:2735713..27359161695740981.8538773-UTR-S-ischiensis_contig8:2735713..2735916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2735714..2735916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.1044793-CDS-S-ischiensis_contig8:2735311..27357131622817268.1044793-CDS-S-ischiensis_contig8:2735311..2735713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2735312..2735713 +
1695740981.8404965-CDS-S-ischiensis_contig8:2735311..27357131695740981.8404965-CDS-S-ischiensis_contig8:2735311..2735713Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2735312..2735713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19639.1

>prot_S-ischiensis_contig8.19639.1 ID=prot_S-ischiensis_contig8.19639.1|Name=mRNA_S-ischiensis_contig8.19639.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MKPFPLAGHSMLSRHALQYREVCIHVLLAIVPRPLTPRLVRGGAGPFPLL
AEPGGGGGHPPARGGGWPSPYDPPHPGLVRVRVGGGAPLLDLRPAGKWVP
SPCRDTAGGDPRYPHMFPNRSNRALPRTILTLG*
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mRNA from alignment at S-ischiensis_contig8:2735225..2735916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19639.1 ID=mRNA_S-ischiensis_contig8.19639.1|Name=mRNA_S-ischiensis_contig8.19639.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=692bp|location=Sequence derived from alignment at S-ischiensis_contig8:2735225..2735916+ (Schizocladia ischiensis KU_0333)
CAAAAGGGAAGTGAGCGACATTGTTGCCACAACACAAGCACACTTGGAAG
TAGGAAGCACTTCGAAGTACATGGTTTGGTGGTAAGTATGAAGCCTTTTC
CACTCGCCGGGCACAGCATGTTAAGCAGGCACGCTCTACAATATCGGGAA
GTATGTATTCACGTGTTGCTTGCCATAGTCCCGAGACCATTGACCCCGCG
CCTCGTTCGAGGCGGAGCAGGACCCTTCCCTCTCCTGGCAGAGCCAGGGG
GAGGGGGTGGCCACCCCCCCGCCAGAGGCGGGGGGTGGCCAAGTCCATAC
GACCCGCCCCATCCCGGACTCGTGAGAGTCCGGGTGGGGGGTGGGGCTCC
CCTGCTAGACCTTAGGCCAGCGGGAAAGTGGGTTCCCTCGCCGTGCCGGG
ACACGGCAGGGGGAGATCCAAGATACCCACATATGTTCCCTAATCGCTCC
AACCGGGCACTCCCACGTACTATACTCACGTTGGGCTAGCCTGGCCAAAG
TCCTGAGACCATTGACCTCGCACGCGCCGTCGACGGCGGTGCAGAACACT
GTGTAAGGAGTTCGGAAAACGCGTTTCAGACACCCACGCGCAGTATTACC
AGGAACAACACAGGGCGAGGTGCAGGCCACGTCACCAAAGACCTCAACAG
CGGCCCTTCCTTGCAATAGCTCGCCAGAGGAAATTTGTGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2735225..2735916+

>mRNA_S-ischiensis_contig8.19639.1 ID=mRNA_S-ischiensis_contig8.19639.1|Name=mRNA_S-ischiensis_contig8.19639.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig8:2735225..2735916+ (Schizocladia ischiensis KU_0333)
ATGAAGCCTTTTCCACTCGCCGGGCACAGCATGTTAAGCAGGCACGCTCT
ACAATATCGGGAAGTATGTATTCACGTGTTGCTTGCCATAGTCCCGAGAC
CATTGACCCCGCGCCTCGTTCGAGGCGGAGCAGGACCCTTCCCTCTCCTG
GCAGAGCCAGGGGGAGGGGGTGGCCACCCCCCCGCCAGAGGCGGGGGGTG
GCCAAGTCCATACGACCCGCCCCATCCCGGACTCGTGAGAGTCCGGGTGG
GGGGTGGGGCTCCCCTGCTAGACCTTAGGCCAGCGGGAAAGTGGGTTCCC
TCGCCGTGCCGGGACACGGCAGGGGGAGATCCAAGATACCCACATATGTT
CCCTAATCGCTCCAACCGGGCACTCCCACGTACTATACTCACGTTGGGCT
AGATGAAGCCTTTTCCACTCGCCGGGCACAGCATGTTAAGCAGGCACGCT
CTACAATATCGGGAAGTATGTATTCACGTGTTGCTTGCCATAGTCCCGAG
ACCATTGACCCCGCGCCTCGTTCGAGGCGGAGCAGGACCCTTCCCTCTCC
TGGCAGAGCCAGGGGGAGGGGGTGGCCACCCCCCCGCCAGAGGCGGGGGG
TGGCCAAGTCCATACGACCCGCCCCATCCCGGACTCGTGAGAGTCCGGGT
GGGGGGTGGGGCTCCCCTGCTAGACCTTAGGCCAGCGGGAAAGTGGGTTC
CCTCGCCGTGCCGGGACACGGCAGGGGGAGATCCAAGATACCCACATATG
TTCCCTAATCGCTCCAACCGGGCACTCCCACGTACTATACTCACGTTGGG
CTAG
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