mRNA_S-ischiensis_contig8.19637.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19637.1
Unique NamemRNA_S-ischiensis_contig8.19637.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19637.1 vs. uniprot
Match: A0A7S0SVJ8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SVJ8_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 6.200e-5
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = -2 
Query:  823 LRWARENGCPWDKKTCQRAAERGHMDVL 906
            LRWAR+NGCPWD++TC RAA  GH+DVL
Sbjct:   65 LRWARDNGCPWDEQTCARAAAGGHLDVL 92
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0SVJ8_9CHLO6.200e-575.00Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2713844..2714870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1027
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19637.1prot_S-ischiensis_contig8.19637.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2713942..2714466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.9921474-UTR-S-ischiensis_contig8:2713843..27139411622817267.9921474-UTR-S-ischiensis_contig8:2713843..2713941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2713844..2713941 +
1695740981.7707188-UTR-S-ischiensis_contig8:2713843..27139411695740981.7707188-UTR-S-ischiensis_contig8:2713843..2713941Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2713844..2713941 +
1622817268.0150342-UTR-S-ischiensis_contig8:2714466..27148701622817268.0150342-UTR-S-ischiensis_contig8:2714466..2714870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2714467..2714870 +
1695740981.8029213-UTR-S-ischiensis_contig8:2714466..27148701695740981.8029213-UTR-S-ischiensis_contig8:2714466..2714870Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2714467..2714870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817268.0041568-CDS-S-ischiensis_contig8:2713941..27144661622817268.0041568-CDS-S-ischiensis_contig8:2713941..2714466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2713942..2714466 +
1695740981.7864091-CDS-S-ischiensis_contig8:2713941..27144661695740981.7864091-CDS-S-ischiensis_contig8:2713941..2714466Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2713942..2714466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19637.1

>prot_S-ischiensis_contig8.19637.1 ID=prot_S-ischiensis_contig8.19637.1|Name=mRNA_S-ischiensis_contig8.19637.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=175bp
MHNHCHRAVPRCRERRRPTKVPWTASWWTPCNTHRQTTIPNRYIAYGAGM
PPRHSIQRRTLYCTVVPIIWHTRSSHTDRDAPAPKAPNTHCPAPTAPPHR
APLPRRIQSSMRPKDSHSPGPTSKPPAALLVRQRHRSPHSRGSCWPEPTG
EPPGDCEPPVAFFHREILVRQPRL*
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mRNA from alignment at S-ischiensis_contig8:2713844..2714870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19637.1 ID=mRNA_S-ischiensis_contig8.19637.1|Name=mRNA_S-ischiensis_contig8.19637.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1027bp|location=Sequence derived from alignment at S-ischiensis_contig8:2713844..2714870+ (Schizocladia ischiensis KU_0333)
CCCACTCGCTTCTTTATCTTCATGCCAAAATTGACGGGACCGATCGGAAT
TGGGTACTCCCCCGTCGCGCGCGGACGTAAACGGGTCAGGCCAAAGCTAT
GCACAATCACTGTCATCGCGCTGTGCCACGGTGCAGAGAGAGGAGGCGAC
CTACAAAAGTGCCTTGGACTGCGTCGTGGTGGACGCCATGCAATACACAC
AGGCAGACAACAATTCCCAACCGCTACATTGCGTACGGTGCGGGCATGCC
GCCACGGCACTCCATCCAGAGACGGACACTGTACTGTACAGTAGTTCCAA
TAATTTGGCACACAAGAAGTTCACACACTGACCGAGATGCACCCGCTCCT
AAGGCTCCGAACACCCATTGTCCCGCGCCCACTGCACCACCTCATCGTGC
CCCCCTTCCAAGGCGAATTCAATCGTCCATGCGTCCCAAGGACAGCCATT
CGCCCGGGCCCACTTCAAAACCTCCAGCCGCCCTTCTCGTGCGGCAAAGG
CACAGGTCGCCTCACTCCAGGGGCAGCTGTTGGCCCGAGCCCACTGGAGA
ACCTCCAGGTGACTGCGAGCCCCCCGTGGCATTCTTTCATCGGGAAATCC
TTGTACGGCAGCCCCGCCTGTAATTTGACTCCAGGGGCAGCCGTGGGCAT
GTGCCCACTTCAAGCACTCTAGCTGGCCACACATTGCTGCACTGACGGAA
GTGGACTCATCCCCAGGGCAGCCATTGGCCCGGGCCCACTTGAGTACGTC
CAGGTGACCCCATGCTGCTGCCAGTTGACAGGTCTTCTCGTCCCAGGGGC
ACTGGTGTGCCCGGGCCCACATGAGTACATCCATGTGACCCCGTTCTGCT
GCCCTTTGACAGGTCTTCTTGTCCCAGGGGCAGCCATTCTCCCTGGCCCA
CCTGAGAGAACCTCCAGATGCCCCTCCCGTGCAGCCTGGGAACAGGTTTG
CTCATCCCAGACACATCCCATCTCCCGGGCCCATTTGAGCACGACCAGAT
GACCCGTGAACGCTGCTTCTTCACAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2713844..2714870+

>mRNA_S-ischiensis_contig8.19637.1 ID=mRNA_S-ischiensis_contig8.19637.1|Name=mRNA_S-ischiensis_contig8.19637.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1050bp|location=Sequence derived from alignment at S-ischiensis_contig8:2713844..2714870+ (Schizocladia ischiensis KU_0333)
ATGCACAATCACTGTCATCGCGCTGTGCCACGGTGCAGAGAGAGGAGGCG
ACCTACAAAAGTGCCTTGGACTGCGTCGTGGTGGACGCCATGCAATACAC
ACAGGCAGACAACAATTCCCAACCGCTACATTGCGTACGGTGCGGGCATG
CCGCCACGGCACTCCATCCAGAGACGGACACTGTACTGTACAGTAGTTCC
AATAATTTGGCACACAAGAAGTTCACACACTGACCGAGATGCACCCGCTC
CTAAGGCTCCGAACACCCATTGTCCCGCGCCCACTGCACCACCTCATCGT
GCCCCCCTTCCAAGGCGAATTCAATCGTCCATGCGTCCCAAGGACAGCCA
TTCGCCCGGGCCCACTTCAAAACCTCCAGCCGCCCTTCTCGTGCGGCAAA
GGCACAGGTCGCCTCACTCCAGGGGCAGCTGTTGGCCCGAGCCCACTGGA
GAACCTCCAGGTGACTGCGAGCCCCCCGTGGCATTCTTTCATCGGGAAAT
CCTTGTACGGCAGCCCCGCCTGTAAATGCACAATCACTGTCATCGCGCTG
TGCCACGGTGCAGAGAGAGGAGGCGACCTACAAAAGTGCCTTGGACTGCG
TCGTGGTGGACGCCATGCAATACACACAGGCAGACAACAATTCCCAACCG
CTACATTGCGTACGGTGCGGGCATGCCGCCACGGCACTCCATCCAGAGAC
GGACACTGTACTGTACAGTAGTTCCAATAATTTGGCACACAAGAAGTTCA
CACACTGACCGAGATGCACCCGCTCCTAAGGCTCCGAACACCCATTGTCC
CGCGCCCACTGCACCACCTCATCGTGCCCCCCTTCCAAGGCGAATTCAAT
CGTCCATGCGTCCCAAGGACAGCCATTCGCCCGGGCCCACTTCAAAACCT
CCAGCCGCCCTTCTCGTGCGGCAAAGGCACAGGTCGCCTCACTCCAGGGG
CAGCTGTTGGCCCGAGCCCACTGGAGAACCTCCAGGTGACTGCGAGCCCC
CCGTGGCATTCTTTCATCGGGAAATCCTTGTACGGCAGCCCCGCCTGTAA
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