mRNA_S-ischiensis_contig8.19627.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19627.1
Unique NamemRNA_S-ischiensis_contig8.19627.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2652597..2654597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.5576377-CDS-S-ischiensis_contig8:2652596..26527741622817261.5576377-CDS-S-ischiensis_contig8:2652596..2652774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2652597..2652774 -
1695740977.890477-CDS-S-ischiensis_contig8:2652596..26527741695740977.890477-CDS-S-ischiensis_contig8:2652596..2652774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2652597..2652774 -
1622817261.570122-CDS-S-ischiensis_contig8:2654553..26545971622817261.570122-CDS-S-ischiensis_contig8:2654553..2654597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2654554..2654597 -
1695740977.900528-CDS-S-ischiensis_contig8:2654553..26545971695740977.900528-CDS-S-ischiensis_contig8:2654553..2654597Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2654554..2654597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19627.1prot_S-ischiensis_contig8.19627.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2652597..2654597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19627.1

>prot_S-ischiensis_contig8.19627.1 ID=prot_S-ischiensis_contig8.19627.1|Name=mRNA_S-ischiensis_contig8.19627.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
AVLPLKPERAKGQYNVSFAIVKMSNLTGTLNDGAQPQQQVHRFNINGSVL
AQVRGAGIFFCSALCRHRLRLPRP
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mRNA from alignment at S-ischiensis_contig8:2652597..2654597-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19627.1 ID=mRNA_S-ischiensis_contig8.19627.1|Name=mRNA_S-ischiensis_contig8.19627.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2001bp|location=Sequence derived from alignment at S-ischiensis_contig8:2652597..2654597- (Schizocladia ischiensis KU_0333)
GCGGTACTCCCGTTGAAGCCCGAACGTGCGAAAGGGCAGTACAAGTGAGT
GCTCGAGGCCGTCCAGACGGAATTCTGTTCTCCAGCCTGGATTCCTGCTG
ATTTTCCGCAAGCGCAAGCTCCGAAACATAGTAGAGGTGGCGCTGAGAGA
AGCACTCAGGGAGTGGGGCGTTTGCCCCAGTGTTCAACTCGGTTTCCGCA
ATGGCTTCTGTTCTCCTGGGCCAGTTATGGGCTGGAAGCAGACGCTAATA
CCTCGTATCCCATGGTGTTGGCTGACCAGCATGGGGCTCTGGCACAAATT
GGCACTTACGTTCCTGGACGTTGTGGTGCTTAAGGACCCCTGACTTCGGA
GCATCACAGCACCTGCAGCGAGCGCCACGAGGATACTGTGTGTACGGACT
GTTAGCAGGCCGCAAGTTGCCACGGCACAATGATGTGGTCCATTGATATT
GTGGTACAGCAAGGAGAATATCGGCACCCATGCTGGAGTTGTATGGCTTG
CATATTTGGTCTACTGTACTGCAGTACCGTGGCTGCACAACTGCAGCTTG
CTGGCGTACGTTGAATAGATCCAGTTCTCCGACCCAGCCGCACTTGAGAC
TGGGCAATTCATCGAGCCCTCGCTCTTGGGACCCGTTGTATGGAACCAGT
TGGAGACCCTCGCCCGACGGGAGCGTCTGCGGTGACCGAGGGCACACGTA
TTGCTTGCGGGAACAACACCCTCTCCCGGTGCAGACCAAATCATAGCGCA
AATGAATGGGGCGATTGCCCAACGCCTGAGCAACGTCTTGAAACCCTTGC
GTTCCCGGCAATTACCGGCTATGTTCTTTGCACCCTCCAGGGGCGTGGAG
TCTGTTCGCTTGTTTGTGTGGGTGGTGCGTCCAGGTATGGGTCCGTAAGC
CACGGAGACTGTCTGATGCCTCGTGACCCAGCCGCTTGCGGGGTGTCTGG
CCTAGAAAATGGCCTATGTCATTTTGTTCGACTTGTTCCTTTCCCGTACT
GCATCGAGCATCTACGGGCGCCGGTCGACTGGAAGCTCGGCCGAACTGGG
GGGGGGGGGGAACGCGTCGCCGTGGGACAAGTGGTGGCGTCGTGTACGCC
TACCACACTGGTCTTAACCCCTGAAGCGGACATGTTCTCGCTTTTACGTG
CGTCATGATGTCAGGCCAAAACTGGGCCACCTGGCGCACCCGGCACTTGC
GTGCCTTTCCCGGTCGTGTGGTACGCGTAGCTCCCATCCGACTCCCCATG
ACCCACCCTTCGATTCGTGAACATGGCCCCAGGGCCTGTACGAGCCCTTA
CCGCCCCCGCCGACCTCCCAAGGGGTCATATGTCCACCATGTGGCGCCTT
GATTTCTTTCTGTGCGCCCCGCCCCCACATTCACGCATGCCACATTCACG
CATGCCGCCTCAGTTTTGGCTCACGGCCTCACAAGTGACAATACTACAAC
TTGTCGGGTGAGACGGGTGCTTGCGCATGCGCGCCTCCTACCCCTGCGCT
CGAATTTGCTGCGGCGAGAAACACAATCCATGCCGGCGCACAGTGCGTGC
ATGACTGCCCCTCCCCCCGCACCCCCCCTTGTTGAAGCCGTCCTTTTGCG
CGGCCCGCACGCCGGGGCGTTCTTGTTGTTTGGTCCTGGGTGGCACGTGT
GCGAGCGTGCACATAGTGCGCCACGCGTATGGGCCACGCATATGCACTGT
GCATATGCGCTGTGCATATCACTTCTTGTCCGTGCATTCAGTCTCGCCAA
CGCCTGACCAAACCCCGCTGCCCCCCACCCACGCTCCCTCCCTCCCTTCC
CCCGTGGGCGACACCTACTTCAGCGTGTCCTTCGCCATCGTCAAGATGTC
AAACCTCACTGGCACCCTCAACGATGGTGCGCAGCCCCAGCAGCAGGTAC
ACCGCTTCAACATCAACGGAAGCGTGTTGGCACAGGTGCGCGGGGCGGGC
ATTTTTTTCTGCTCTGCGTTGTGCCGTCACCGCCTCCGCCTTCCCAGACC
A
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2652597..2654597-

>mRNA_S-ischiensis_contig8.19627.1 ID=mRNA_S-ischiensis_contig8.19627.1|Name=mRNA_S-ischiensis_contig8.19627.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig8:2652597..2654597- (Schizocladia ischiensis KU_0333)
GCGGTACTCCCGTTGAAGCCCGAACGTGCGAAAGGGCAGTACAAGCGGTA
CTCCCGTTGAAGCCCGAACGTGCGAAAGGGCAGTACAACGTGTCCTTCGC
CATCGTCAAGATGTCAAACCTCACTGGCACCCTCAACGATGGTGCGCAGC
CCCAGCAGCAGGTACACCGCTTCAACATCAACGGAAGCGTGTTGGCACAG
GTGCGCGGGGCGGGCATTTTTTTCTGCTCTGCGTTGTGCCGTCACCGCCT
CCGCCTTCCCAGACCACGTGTCCTTCGCCATCGTCAAGATGTCAAACCTC
ACTGGCACCCTCAACGATGGTGCGCAGCCCCAGCAGCAGGTACACCGCTT
CAACATCAACGGAAGCGTGTTGGCACAGGTGCGCGGGGCGGGCATTTTTT
TCTGCTCTGCGTTGTGCCGTCACCGCCTCCGCCTTCCCAGACCA
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