mRNA_S-ischiensis_contig8.19626.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19626.1
Unique NamemRNA_S-ischiensis_contig8.19626.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: D7G3J4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J4_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 3.940e-76
Identity = 121/131 (92.37%), Postives = 129/131 (98.47%), Query Frame = 3 
Query: 1506 KMVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            +MV+M VLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV+ELTGRINKCGVISPRFD+PL+DVE W+NNLLPARGFGHIVL+TTFGIMDHEEARRKHTGGK+LGFFY
Sbjct:   57 EMVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELTGRINKCGVISPRFDMPLQDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 187
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A836CHB7_9STRA (Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.330e-73
Identity = 120/130 (92.31%), Postives = 125/130 (96.15%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLADTLKT+SNAEKRGKRQVLIRP SKVVVKFLQ MQK+GYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPL D+E W+ NLLPARGFGHIVLSTT+GIMDHEEARRKHTGGKVLGFFY
Sbjct:    1 MVRMSVLADTLKTLSNAEKRGKRQVLIRPSSKVVVKFLQCMQKHGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLADIEKWMVNLLPARGFGHIVLSTTYGIMDHEEARRKHTGGKVLGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: F0Y589_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y589_AURAN)

HSP 1 Score: 239 bits (610), Expect = 4.650e-71
Identity = 114/130 (87.69%), Postives = 125/130 (96.15%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LK+ISNAEKRGKRQVLIRPCSKV+VKFLQ MQK+GYIGEFEIVDDHR+GKIVIELTGRINKCGVISPRFDV ++D+E+WINNLLP+R FGH+VLSTTFGIMDHEEARRK TGGK+LGFFY
Sbjct:    1 MVRMSVLADCLKSISNAEKRGKRQVLIRPCSKVIVKFLQTMQKHGYIGEFEIVDDHRSGKIVIELTGRINKCGVISPRFDVEIKDMESWINNLLPSRQFGHLVLSTTFGIMDHEEARRKRTGGKILGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A2D4CDH8_PYTIN (40S ribosomal protein S15a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDH8_PYTIN)

HSP 1 Score: 233 bits (594), Expect = 9.150e-69
Identity = 110/130 (84.62%), Postives = 122/130 (93.85%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LKT+ NAEKRGKRQV+IRP SKV+VKFLQVMQKNGYIGEFEI+DDHR+GKIV+EL GRINKCGVISPRFD+ L+D+E W+NNLLP+R FGHIVLSTTFGIMDH EARRKHTGGKV+GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRGKRQVMIRPSSKVIVKFLQVMQKNGYIGEFEIIDDHRSGKIVVELKGRINKCGVISPRFDIKLQDMEKWVNNLLPSRLFGHIVLSTTFGIMDHHEARRKHTGGKVIGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A485KLL4_9STRA (Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=2759 RepID=A0A485KLL4_9STRA)

HSP 1 Score: 231 bits (588), Expect = 6.600e-68
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LKTI NAEKRGKRQVL+RP SKV+VKFLQ MQKNGYIGEFEIVDDHR GKIV+EL GRINKCGVISPRFD+  +D+E WINNLLP+R FGHIVLSTT+GIMDH EARRKHTGGKV+GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDIKQQDMEKWINNLLPSRQFGHIVLSTTYGIMDHNEARRKHTGGKVIGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A7S4SDW0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SDW0_9DINO)

HSP 1 Score: 230 bits (587), Expect = 9.170e-68
Identity = 109/130 (83.85%), Postives = 123/130 (94.62%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LK ISNAEKRGKRQVLIRPCSKV+VKFLQVMQK+GYIGEFEI+DDHRAGKIVIELTGR+NKCGVISPRFDVPL  +E+W  ++LP+R FGH+VLSTTFGIMDHEEARRK+TGGK++GFF+
Sbjct:    1 MVRMSVLADCLKNISNAEKRGKRQVLIRPCSKVIVKFLQVMQKHGYIGEFEIIDDHRAGKIVIELTGRLNKCGVISPRFDVPLNKLESWTVDILPSRQFGHLVLSTTFGIMDHEEARRKNTGGKIVGFFF 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A7S2V5W5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5W5_9STRA)

HSP 1 Score: 229 bits (583), Expect = 3.420e-67
Identity = 108/130 (83.08%), Postives = 121/130 (93.08%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LK ISNAEKRGKRQV+IRPCSKV+VKFLQVMQK+GYIGEFEI+DDHRAGKIV++LTGRINKC VISPRFDVP+  +E WI N+LP+R FGH+VLSTT+GIMDHEEARRK TGGK+LGFFY
Sbjct:    1 MVRMSVLADCLKNISNAEKRGKRQVMIRPCSKVIVKFLQVMQKHGYIGEFEIIDDHRAGKIVVQLTGRINKCAVISPRFDVPVSGMEQWIVNVLPSRQFGHLVLSTTYGIMDHEEARRKKTGGKILGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A7S3PA85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PA85_9STRA)

HSP 1 Score: 229 bits (583), Expect = 3.420e-67
Identity = 107/130 (82.31%), Postives = 121/130 (93.08%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LKT+SNAEKRGKRQVL+RP SKV+VKFLQ MQK+GYIGEFEIVDDHR+GKIV+EL GRINKCGV+SPRFDV ++D+E W+ NLLP+R FGHIVL+T +GIMDHEEARRKHTGGKVLGFFY
Sbjct:    1 MVRMSVLADALKTMSNAEKRGKRQVLLRPSSKVIVKFLQCMQKHGYIGEFEIVDDHRSGKIVVELNGRINKCGVVSPRFDVQVKDMEKWVGNLLPSRQFGHIVLTTAYGIMDHEEARRKHTGGKVLGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A8E8PJK2_9STRA (Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJK2_9STRA)

HSP 1 Score: 228 bits (580), Expect = 9.170e-67
Identity = 105/130 (80.77%), Postives = 122/130 (93.85%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LKT+SNAEKRGKRQVL+RP SKV++KFLQVMQKNGY+GEFE+VDD RAGKIV+ LTGRINKCGVISPRFDVP++D+E W+ NLLP+R FGH+VL+T+ GIMDHEEAR++HTGGKVLGFFY
Sbjct:    1 MVRMSVLADALKTLSNAEKRGKRQVLLRPSSKVIIKFLQVMQKNGYVGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 130
[Close]
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Match: A0A397AIG1_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AIG1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 5.080e-66
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 3 
Query: 1509 MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFGHIVLSTTFGIMDHEEARRKHTGGKVLGFFY 1898
            MVRMSVLAD LKTI NAEKRGKRQVL+RP SKV+VKFLQ MQKNGYIGEFEI+DDHR GKIVIEL GRINKCGVISPRFDV   D+E WINNLLP+R FGH+VLSTT+GIMDH EARRK TGGK++GFFY
Sbjct:   13 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIIDDHRGGKIVIELRGRINKCGVISPRFDVKQSDIEKWINNLLPSRQFGHLVLSTTYGIMDHNEARRKATGGKIIGFFY 142
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3J4_ECTSI3.940e-7692.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHB7_9STRA2.330e-7392.31Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID... [more]
F0Y589_AURAN4.650e-7187.69Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A2D4CDH8_PYTIN9.150e-6984.6240S ribosomal protein S15a n=1 Tax=Pythium insidio... [more]
A0A485KLL4_9STRA6.600e-6884.62Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=27... [more]
A0A7S4SDW0_9DINO9.170e-6883.85Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2V5W5_9STRA3.420e-6783.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3PA85_9STRA3.420e-6782.31Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A8E8PJK2_9STRA9.170e-6780.77Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID... [more]
A0A397AIG1_9STRA5.080e-6683.08Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2636727..2643537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.5
Seed ortholog evalue1.7e-66
Seed eggNOG ortholog2880.D7G3J4
Preferred namerps15a
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009987,GO:0010259,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons5
Model size1327
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19626.1prot_S-ischiensis_contig8.19626.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2637428..2642029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.539622-UTR-S-ischiensis_contig8:2636726..26374271622817293.539622-UTR-S-ischiensis_contig8:2636726..2637427Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2636727..2637427 -
1695741002.4647405-UTR-S-ischiensis_contig8:2636726..26374271695741002.4647405-UTR-S-ischiensis_contig8:2636726..2637427Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2636727..2637427 -
1622817293.6042237-UTR-S-ischiensis_contig8:2643304..26435371622817293.6042237-UTR-S-ischiensis_contig8:2643304..2643537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2643305..2643537 -
1695741002.5200617-UTR-S-ischiensis_contig8:2643304..26435371695741002.5200617-UTR-S-ischiensis_contig8:2643304..2643537Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2643305..2643537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817293.5522535-CDS-S-ischiensis_contig8:2637427..26375261622817293.5522535-CDS-S-ischiensis_contig8:2637427..2637526Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2637428..2637526 -
1695741002.4781737-CDS-S-ischiensis_contig8:2637427..26375261695741002.4781737-CDS-S-ischiensis_contig8:2637427..2637526Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2637428..2637526 -
1622817293.5631382-CDS-S-ischiensis_contig8:2639602..26397041622817293.5631382-CDS-S-ischiensis_contig8:2639602..2639704Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2639603..2639704 -
1695741002.4882097-CDS-S-ischiensis_contig8:2639602..26397041695741002.4882097-CDS-S-ischiensis_contig8:2639602..2639704Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2639603..2639704 -
1622817293.5738416-CDS-S-ischiensis_contig8:2640222..26402811622817293.5738416-CDS-S-ischiensis_contig8:2640222..2640281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2640223..2640281 -
1695741002.4981678-CDS-S-ischiensis_contig8:2640222..26402811695741002.4981678-CDS-S-ischiensis_contig8:2640222..2640281Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2640223..2640281 -
1622817293.5922534-CDS-S-ischiensis_contig8:2641896..26420291622817293.5922534-CDS-S-ischiensis_contig8:2641896..2642029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2641897..2642029 -
1695741002.508668-CDS-S-ischiensis_contig8:2641896..26420291695741002.508668-CDS-S-ischiensis_contig8:2641896..2642029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2641897..2642029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19626.1

>prot_S-ischiensis_contig8.19626.1 ID=prot_S-ischiensis_contig8.19626.1|Name=mRNA_S-ischiensis_contig8.19626.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
MVRMSVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEF
EIVDDHRAGKIVIELTGRINKCGVISPRFDVPLRDVENWINNLLPARGFG
HIVLSTTFGIMDHEEARRKHTGGKVLGFFY*
back to top

mRNA from alignment at S-ischiensis_contig8:2636727..2643537-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19626.1 ID=mRNA_S-ischiensis_contig8.19626.1|Name=mRNA_S-ischiensis_contig8.19626.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6811bp|location=Sequence derived from alignment at S-ischiensis_contig8:2636727..2643537- (Schizocladia ischiensis KU_0333)
GCACTCACAGTCCCTCGCTGCTGAAAGACTTGCGGCATTGCTTGCACTGC
CCGTGGTAGGCCTCCGCCGGGGCCTTCGCCCCGGTCATTGCCGCCAACCG
CCTGTCGAAGTCCGCGCGTTCGACCGGTGCCAGGCCCGCCACCTTCCGTC
GGAGGTTGTACCGGTGCCAGTCCAGCTTGAAGTGGGCGCGCTGCTCGTCC
GGGGAGTCGAAGCCCAGGTTACAGCCCGTGCAGGTAAACGCCGCCATTTT
CTCTTTCTCCCGTTCCAGGGCAAGTGTCGACAGGGGAAGGTCCTTATCGT
GTCGTCCGTCCCGCGTGTGCGGGACCCCGGGGCGTTTCTCCTCCTGGGGC
ACGGGCGAAGGCCGTCTGTTTACCCCGGGTGTGTGAGTTCGGCAATCGAG
GTTCTCGGCGGCCAACGCCTCCGCTCGGACATAAAACCTTTTTTGGTGGA
CGAGGCTCACGGCCTCAGGTTTGCCTCCTGTGCAGGGACAATTCTCCCGC
TTCTCTGTCACTCCGTGACAGACAAGCACCTCCAAGGTGAGGTTTCGTGC
ATGCCACGCGTCGGAACGGTCCCGGACGTCGAAGAAAGGGGTTGGAGCCC
TCGGAATCGGCGACAAGACCGATGCCGCACTGGTGGGGTGGAGTGTCGTC
GTAGCACACGTGTGGGACGAGCGACGGGGCAATGCTGGGTGATTTTCCGG
GGGTATCCCAGAAGAGTGCCTCTCCGTGAACATGGATGAGATATATCGAG
CCTTAGGCGCGGGTTGTGTTGCCTCCGCAAGGCCTCAAACCTGGGGCGTG
CCGCGGGTCGGGCAGGGGTCGCTCAACTTAAGTGATGCCCCTGTCGTGGT
GGCAGCATTGCACAATTTCACTAGGCCTCCCCACGTATGGAGATGTCATA
TATCCGCTCGCGAGGGGGTGTTGAAGGGAGTCGGCGTTTCAGTGTTCCAC
TTTTTGTTTTCCTCTCTCTCAATGGCCAACATGAGCCATCCCCACTCTTG
GCCGTGGCCATGTTGGTGGTAGCTTGCCCCCCACAGCGACGAATTTCCCC
CCAGAATCGTTAGCCTGTTTGTGCTCTGTGGTTGGCAGTGCTGTGCTCAA
GCAAGCTCGTCTGCTGTCAAAGGCGCCAACGTCCAACATCCCGCAGCAGC
GATTCAGCCGTGGCTGGCTTCGCACCATGGTCCCTTTCCGTCTTCTCCAC
CAACAATATCCTCTCCCCTCTGGTCGCATAATTTTTCTCGTCCTCCACCC
CTGACACCCTCGCCTCCCCATAAACCTGGCATATGTGAGTACTGTAGCTT
CCCCAGAATACAGGATTCTGTGCCTTCTTTTCTCACGCGTGGGATGACCC
GGTGGTCGATGACCATACATGTACTGCTACTACTGGACAGACGGCAAGCA
ACTCATGAGTACTCCACCCCGCCCGCTTCCCCCCCGAATTTCCACCCTCC
GCGTTCGTTCTGCCATTTTGCCCCATCTCACCTCAAACCAACAAATATAC
ACGGAAAGATGGTGCGCATGAGCGTGCTGGCAGACACCCTTAAGACCATC
TCCAACGCGGAGAAGCGGGGCAAGCGGCAGGTGCTCATCCGGCCCTGCTC
CAAGGTGGTGGTCAAGTTCCTGCAGGTTATGCAGAAGAACGGTGAGCCCC
CCGCTCCCCCCCCCCCTTCGTATTCGTGTACAGTAGAACACGAACTATAC
GTGCAAGTAGGCTACTTCGAAGTAGGAGCTCTGTGAAATGGTGGTACAGT
GTACTACGGTATAGTCGAGGCGCTTGGTCAATGGTCTCGGGACTACGGCA
CGCACAACGTGAGTACATATGTAGGGGCCTGCTCCGTCTCGATCGAGGCA
CGTGGTCAATGGTCTCGGGACTACGGCAAGCACAACATGAGTACATTTCC
TTGGAAGTACATATATACTACATAGTACATGCCAATGGCCGCAAGGCTAC
CCCGTATGGGACCGACCTGGGTCAGCACGGAGTATACTGGCTCGAGGCGG
TGGCAAGCACAGGATGGGATCCCCATCCGCCATGAGTACACAGTATATAT
ACTTCCCGACAGAGTTGGGGAGTTTTTGGCGGAAACCCGAAGTACGGGGG
TTCATGAAGTGAGGGCTCACTGAAACTACAGAGGGGTTTGTGAAATGACC
GTGCGTTACTACTAGTAGATTACTGGGGTTAGTGAGATGATGGTGTTCTA
GGCTATAATAGGGTTTAATGAAATGATGGGAGACTGCACTATTGGGGTTA
GCGAAACGGTGGCACGCTGAACGATAAATTAGAGGCTTGTGATTGGTGGT
ACACGTAGCTATGGGGTTTAGTGGATTGAAGGTGCAATGAAATACTCCGT
CTCGCACGAGGCGCGGGGTCAATGGTCTCGGGAATACGGCAAGCACCACG
TGAGTACATATAATAGAATGATACGTGAGTACACATATATAATCAGATGA
TGCAGTAGGTTTAATGGATAATTTTTTTTTTGTGCCGTTATCCTCTGAAG
CCAATGAGTACATATATATCCTCTGATAGGGAAGTGGCCAGCGAGCGCCC
TGGGCCGGGCCTGCCCCTGTCCCGGCCGCTGTTTCGTGGGAATGCGGGGT
GGGGGGGGGGGCAATGGCTCAATATCTGAATCATCCCCGATCTGCTCCGT
CTCCGTCGAGGCACGGGGTCGGGTCAATGGTCTCGGGACTATGGCAAGCA
CGGCGTACGTATGTGCATACTATAGTACTTACAGTCATGGTCTCCCTATA
TATATATATATGCACTCACGTGGTGCTTGCCAAAGTCCTGAGACCGTTGA
CCACGCGCCTCGGTCGAGGCGGAGCAGGACCTCCTAGCTACTTGGTTTGT
TCGAACACCGTTCTCCTTAGCTACTAGGATGCTGCGAACAAATGGTCTCG
GGACTATGGCAGGCACGGTGTGAGTACATATAAATAGTACTTACGGTCAT
GGTCTCCTAACTACTTGGGTTATTCAAAAACCTTCTCCCTAACTATTAGG
ATGCTGCGAACAAACGGTCTCGGGACTATGGCAAGCACGGCGTGAGTAGT
ACATACATACCCCCAATTTCCCTGATTCTCCGTGCATTCCGTGCCCCCTC
CCTCACTGCCTCCCTCCCCCGCTCCGCTCCCCTCGTTCTCTTCGCCTCAT
TGCCGACCGTCCTGCCCGCCGGCCAACCGCGCCAACGGCCGTCATCCCCC
GCCTTCCTCTCCTCCCCTCCCTCCGTTCTCTGTGTTACCCCTGGCGTCTC
CTGCAGGGTACATTGGGGAGTTTGAGATTGTGGACGACCACCGGGCGGGC
AAGATTGTCATTGAGGTGGGTGGGATGCGGAAGCGTGTTTTTTTGGATTG
CGTTCTAGTTACTTGTTGCCGTGTGTGTGTGTGCGTATGTGTGTGTGCGT
GCGTGCGTGCGGGGGTGCGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGTACGTGTGTGGGCCCTGGTCTCTTGCAAGCGCAGTAG
TGCGATCTTCAGCGGCGGGACCTGCCACCCCTCCGCAGTCACGCCAGCGC
TGGGCCAAACAAGGCACCCGTAGAGTATGCACTCATGAACGTGCGCTGTT
TCGCCTCGACGATTGTGTGCATGGCTGATAATAGCCCAAGCACTCCCGAA
GTAAAAGTTGTTGCGGGCTTGCCGGGCTGAGCAATGCAATCCATGTACGT
TTTGGACCAGTCTAACATGTCATTGCGTGCGATTGTGAATGTGGTGGTGG
TTGTTGTTCATGTGGCGACGGCGGTGGCACCGGCGATGTGGGTTGCGGGC
GGGCGGCGGCGGCGGCGGCGGCGGCGCGTGCAGCTGACGGGCCGCATCAA
CAAGTGCGGTGTCATCTCACCCCGGTTCGACGTGCCCCTGCGGGATGTGG
AGAACTGGATCAACAACCTCCTGCCTGCTCGTGGGGTGAGTTAGCTGTGT
GACGGGGTGCGGGGCATTGTGTGTGCGTGCGTGCGTGCGCATGTGAAGGA
GGCCGGGGGGTGGGGAAGGGGCGGGGCGTACGTGTGTGTCTGTGGGTCGG
TGGGCGGGTGGGTGCACCACCGTTAGCCGTTGACGCCGGGGAGGGTTGGT
AACCGAGGGGCCTCAGCCGAGAGGGACGACGGCACGCGAGGCTGTAAGTG
CATTTTGGTTGACCGTTTGAGGTTGGTGAAAACTGATGTGAGCTGATGTG
ATGCGATATGCACTGTGTTGCACTGTAGGTTGACGTCACATCACATCATA
TATATGTACTCACGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGC
CCCTCGATCGAGACGGAGCAGCATCTTGAAGGGTATTTGTCGCTCGGTGC
GCGGCCTGGGGCAAAAGCTTTGAAGGCACATCACCCGCCGGTAAATACAA
AGTACCTCCCTGGAGCGTGGGCTGTATGAGGTGGTTGGGTGCTGGGAGTT
GCCTGTTTTGCCGTGTGTGCGTGCCTCGTGGGCTGTGAGAAGTGGTTTGA
GCCCAGGATTTGCTTCAAAAGTACGTGAACGTTTCGGAGAGACGTATGGA
CAGTATTGTGCTTGCAGCATTGGCTGCTGTAGTGTTGGTCATGGGAGGTG
TACCCCGCGTTAGCGTTGCCGGGAAGGTATTGGTAGCACACCTCTGGGTT
TGCCAGCTTCTGCCCTTGATGTGTGTTCTTGTTAGCAAACGCCTTCACCC
CGAAGAGAGAGAGATTTCTTGCTTGAGGGATGCGGTTTGGTCATGCACTT
GATTAAGCGCGTGACACCAATTTGTAACCGCTCCAACCTGCAGCAAATCT
TGCACTGAGTAGCACATTGCCGGAACCCACGGTGACCGGCACACATAGTT
TCCGTGCTTTCTTTTGCCGTTTTTTCCACGAGACCCATCCGTGCCTCGCC
CCCTCCGCCCCCCGCCCCGGTCGCCGCCGCTGCCGCCGATAAGCGCTCCA
GTTGGCCACGCTGTCGCCTGCCCATCCCCGGGGGATAGTTGATGAACACA
CCTATCAGAGTTCTGACACCTCTTGTGCGAAGAGCCCCCCAGCAAAATGC
CCGGGGCGCTCCGATGAACGCAACCCTGCATAGTTCCTGATATCCCACGG
GGGGGGGGCAGCGCCGCGGCCCGGCGCATCGCGTTTGCGTGGCGGCGGCG
GGTGGCGGTTCGGATTGAAGTTCCCTTTTCGACAGACCGGACATTTGTTT
TTGTTGTTTTTCGGTTTTGCCCCCTAGCAACAGCAGCGGCAAGGCGGGGC
CACCGAACAAAAGTTTGGCACTGCAAGTAGAGGCCCGTGTGCTGTACTAC
TGGCGTGACCTTTTGCATGTTTCAAACCGCTCCACCACCCCTGCGAGAAC
ACTCAATTTCACACACGTGCGATTGTACATGGTTGTAGCAAGGAAGGGCC
ATTGTTGAGGTCTCTAGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCC
TTATAATACTTCTAGGTACTATTCAAATATTTCTATGCAGTATTCGGTAT
ATATATTTGAATCACTGACATGACCTTGCTCCCCCCCCCCCCCTCTCCCC
CTTACCCCCCAACCCACCTACCCTCGCCACTGTGCGCGGCACACCCTGCC
ATGGATGGCGCCCCACCGCCCGGTTTGGCCCTCTCGCGGGTGTGCACACC
CACCCGCGGCGGCCGCTGGGACGGGACTTTTTGTTCCGACTGCCGGCCGG
TGATGCTATTTTATTATCACACGGCCCGTCTTGTCCTCTCCCGTGGCCTT
CACGCCCTCTGGTTGTGTGTGGCGCATGCGTGTCGGCGCCCATGTTTTGT
ACTGCTTACGGCGACGTGTGCACGCGTGCGTGCGTGTGTGTATGCGCGTG
CGTGCACGATGTCTCTGCACCCCCCCTGGTGCCACGCGTACGCGACGCCG
CGCCCATTGTGTTGCGTTGCGTTGGATGTCATTGTGTGTGTGCGTGTGTG
TGGTTTCCCCCCATGCGGGGCGGCGACACGACTCCTCCTCCTCCTCCTCC
CCCTCCCCCAGTTTGGGCACATCGTGCTCTCCACCACGTTCGGGATCATG
GACCACGAGGAGGCTCGTCGCAAGCACACAGGGGGCAAGGTCCTCGGCTT
CTTCTACTAAGTTAGGCCCGGGCGGGGGGGGCTACAGGACGGGACCGCCC
CTTCCGCGTGCACCAGCTGTCAGCCCTGGTCCCACCACGCATCCATGGCG
ATCGGCCAGCTGTGGGTGCCCAGCGAATGCGTGGGCGGGCAGGCGTGCGG
GCAGGCAGGCCCGGCCACACCGGCCGCCCCTCCGCCCGCACACACGACGT
TTTGTGTACTAACTACAGTAGTCGATGCACTACGAGTCTCACAGAGTGAG
GAACGCAACCTGAGGACACCTAGTAAAAAATGACAAAAAGTTCAGAACAA
CGCGCTCATGCATGATGCAGCTAAGTACAGTAGCTGCTTTACGCACAAAA
GCAAGTCCTGTGCTCAAAGTTGGCACACAAGCACAAGCCCCCGCACGGCC
CGGGCCGCCATGGCACCCGCCAGCCTGAGGACTGTCGGATTCCCATGCAC
TCCGAGTCGCGCATGCCCGGGCCGCCAGACCCTACAAGGCTACTTGTAAG
CTTGAGGAATCCCTGCACGGGCAGAACCTCTCCCGCCCGTTCAAGTGGCC
TGACCGCAGCGGTGGCAGGGGCGCTCGCCTCAAGAACGAGTGGCCTCGCC
TCCTCCTCCCAGGGGGGTTCTGCCACGGCGCTCGCTGCCCTTGCCACGGG
CAGGTCGGGCGCCGTACCGCCCTCGTTGGCGCCCCCCCCAAACCGCCGCT
TCGCACTCCCC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2636727..2643537-

>mRNA_S-ischiensis_contig8.19626.1 ID=mRNA_S-ischiensis_contig8.19626.1|Name=mRNA_S-ischiensis_contig8.19626.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig8:2636727..2643537- (Schizocladia ischiensis KU_0333)
ATGGTGCGCATGAGCGTGCTGGCAGACACCCTTAAGACCATCTCCAACGC
GGAGAAGCGGGGCAAGCGGCAGGTGCTCATCCGGCCCTGCTCCAAGGTGG
TGGTCAAGTTCCTGCAGGTTATGCAGAAGAACGATGGTGCGCATGAGCGT
GCTGGCAGACACCCTTAAGACCATCTCCAACGCGGAGAAGCGGGGCAAGC
GGCAGGTGCTCATCCGGCCCTGCTCCAAGGTGGTGGTCAAGTTCCTGCAG
GTTATGCAGAAGAACGGGTACATTGGGGAGTTTGAGATTGTGGACGACCA
CCGGGCGGGCAAGATTGTCATTGAGGGTACATTGGGGAGTTTGAGATTGT
GGACGACCACCGGGCGGGCAAGATTGTCATTGAGCTGACGGGCCGCATCA
ACAAGTGCGGTGTCATCTCACCCCGGTTCGACGTGCCCCTGCGGGATGTG
GAGAACTGGATCAACAACCTCCTGCCTGCTCGTGGGCTGACGGGCCGCAT
CAACAAGTGCGGTGTCATCTCACCCCGGTTCGACGTGCCCCTGCGGGATG
TGGAGAACTGGATCAACAACCTCCTGCCTGCTCGTGGGTTTGGGCACATC
GTGCTCTCCACCACGTTCGGGATCATGGACCACGAGGAGGCTCGTCGCAA
GCACACAGGGGGCAAGGTCCTCGGCTTCTTCTACTAATTTGGGCACATCG
TGCTCTCCACCACGTTCGGGATCATGGACCACGAGGAGGCTCGTCGCAAG
CACACAGGGGGCAAGGTCCTCGGCTTCTTCTACTAA
back to top