mRNA_S-ischiensis_contig8.19617.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19617.1
Unique NamemRNA_S-ischiensis_contig8.19617.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19617.1 vs. uniprot
Match: D7G7C4_ECTSI (FYVE-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C4_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.410e-31
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 2 
Query:   56 KLELKLSSSAFRVKR-GEVSPSPAEFKAREREESQDLPFCSVCTAPFALLVRRQRCQVCGESVCAQCSSDRRHVEGHKGLQRVCDICIVEGPCAFATPTILEDPGL 370
            KL    +S   R+K+  + +PSP+EFK+RER++  D PFC VC APF L++RRQRC VC +SVCA CSSD+RHVEG KGLQRVCDICIVEGP       +L++ G+
Sbjct:   48 KLRPSGTSRTLRLKKQAQFTPSPSEFKSRERQDVVDQPFCGVCAAPFTLMMRRQRCAVCADSVCAPCSSDKRHVEGQKGLQRVCDICIVEGP------VVLDENGM 147
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BLAST of mRNA_S-ischiensis_contig8.19617.1 vs. uniprot
Match: A0A7S0ZS91_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZS91_NOCSC)

HSP 1 Score: 52.8 bits (125), Expect = 2.640e-5
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 2 
Query:  170 CSVCTAPFAL--LVRRQRCQVCGESVCAQCSSDRRHVEGHKGLQRVCDICI 316
            C VC A      L  R  C+VCG SVCA+CSS    +EG  GLQRVC+ C+
Sbjct:    6 CFVCDAALGKRHLNPRHHCRVCGNSVCAKCSSSNVQLEGISGLQRVCNHCV 56
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7C4_ECTSI1.410e-3157.55FYVE-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0ZS91_NOCSC2.640e-550.98Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2567213..2568761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size410
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19617.1prot_S-ischiensis_contig8.19617.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2567214..2568761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817261.3299422-CDS-S-ischiensis_contig8:2567213..25673441622817261.3299422-CDS-S-ischiensis_contig8:2567213..2567344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2567214..2567344 -
1695740977.748055-CDS-S-ischiensis_contig8:2567213..25673441695740977.748055-CDS-S-ischiensis_contig8:2567213..2567344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2567214..2567344 -
1622817261.3407042-CDS-S-ischiensis_contig8:2567605..25677241622817261.3407042-CDS-S-ischiensis_contig8:2567605..2567724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2567606..2567724 -
1695740977.7599492-CDS-S-ischiensis_contig8:2567605..25677241695740977.7599492-CDS-S-ischiensis_contig8:2567605..2567724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2567606..2567724 -
1622817261.3535635-CDS-S-ischiensis_contig8:2568603..25687611622817261.3535635-CDS-S-ischiensis_contig8:2568603..2568761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2568604..2568761 -
1695740977.7702646-CDS-S-ischiensis_contig8:2568603..25687611695740977.7702646-CDS-S-ischiensis_contig8:2568603..2568761Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2568604..2568761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19617.1

>prot_S-ischiensis_contig8.19617.1 ID=prot_S-ischiensis_contig8.19617.1|Name=mRNA_S-ischiensis_contig8.19617.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
GSGPSGGGAGSGSRGTEEKAGAEAVVLGVQGEAGRGEPVAGGVQGAGEGG
IPGPALLQRVHGAVRAAGAAPALPGLRGERVRAVLLRPPTRRGPQGPPAR
VRHLHRRGPLRLRHPHHPRRPGPRAAPHLCRFPRQR
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mRNA from alignment at S-ischiensis_contig8:2567213..2568761-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19617.1 ID=mRNA_S-ischiensis_contig8.19617.1|Name=mRNA_S-ischiensis_contig8.19617.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1549bp|location=Sequence derived from alignment at S-ischiensis_contig8:2567213..2568761- (Schizocladia ischiensis KU_0333)
GGCAGTGGGCCCAGCGGGGGTGGGGCCGGCAGCGGCAGCAGAGGCACCGA
AGAAAAAGCTGGAGCTGAAGCTGTCGTCCTCGGCGTTCAGGGTGAAGCGG
GGCGAGGTGAGCCCGTCGCCGGCGGAGTTCAAGGCGCGGGAGAGGGAGGA
ATCCCAGGGTGAGCTGGCTGCTGTAGAGTACTGTAGTATAGGGCTTGTGT
GGCGTGTGCAGTGGCCAATCCCGCCCACGTCGTGTGTGTGTGTGTGTGCA
TGTGTGCGTGCGTGTGCGTGCAATTGTGCGCGTGTGGTTGTGCCCGTGCC
TGTATGCGTGTGTGTGGTGCACGTTGTGCATCCTTGCTGGGCTGGGAGGT
ACATATATATGTACTCGTATATGTGCTCATTGGATTGTCTAGCGACATAC
CTTGCGTGCTTAGCCGGCAGCCCTAAGTCAAAGCTTCGTGTTCACCCTCC
AACAGGAGTAGCTACTTAGCCTGGCTGGCAGGAGTGAATCAAACACTTGA
AGCCCCCATGAAGCACTTTGGCACCGCTGCATGACTCCACTTTTTTTCTG
TACTTGTAGACCCCGCGCGGTCTTTGGGGGAATCGGTCGGACGGGCGGGG
CGCACCGAGACTTTTCCGCCTTCCTTGGGAATAGAATCGTACAATAGGCA
TATCCCCAGCAAAACATGTGGGGAGTCCAGGCGCAGTCACGGTTCACGGG
TGTCGACTGCTTTGTTTTGTTTTGTTTCTGGGATGTTTTCCGGTGATATT
GTACGAGTGCGGGAACGCGACGGACTCCTCAGCCAGTCTGCTAGAGCGTG
CTCTTAAAATCCCCGCCAGGCACGCAAGGTTATGCCGCAAGACAAGCCAA
AGAGTATATATGTATACCAGGGACGCTTGATTGACACGTGACGGACTCCT
CACCCAGTCTGCTAAGGCATGCTCTTTAAACAATCCCCACCAGGGACGCT
TGCACTTGTGCGACGGGCCCGGCACGACCTCATGAATGAGCCCCCGGGCC
CCCGGCTTTGCACACGCTCCCTCCCCCCACACGGCAGACCTGCCCTTCTG
CAGCGTGTGCACGGCGCCGTTCGCGCTGCTGGTGCGGCGCCAGCGCTGCC
AGGTCTGCGGGGAGAGCGTGTGCGCGCAGTGCTCCTCAGACCGCCGACAC
GTCGAGGCAAGTGCGGTAGCGAGGATGCGTTTTTTGTTGTGCTGTGGTTT
GGCGAAAGGACCCCAAGCAGTACACACGAGTATTGTACAGACTCTGTGTA
CTGTAGGATGCTCTACGGTACTGCGGTACTGTACTGACATGATCCCCTTG
GCCTCGGCGTCCCCCGGTGCCGTCCACCGCCACCTCCCCTCCCCTCCCCT
CCCCTCCCCTCCACCCACCTTGCCTGCACGCTGCCGCCCCTCGCCCACTC
CTCTCGACACACCCCAGGGCCACAAGGGCCTCCAGCGCGTGTGCGACATC
TGCATCGTAGAGGGCCCCTGCGCCTTCGCCACCCCCACCATCCTCGAAGA
CCCGGGCCTCGTGCCGCTCCACATCTCTGCCGCTTTCCAAGGCAACGAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2567213..2568761-

>mRNA_S-ischiensis_contig8.19617.1 ID=mRNA_S-ischiensis_contig8.19617.1|Name=mRNA_S-ischiensis_contig8.19617.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig8:2567213..2568761- (Schizocladia ischiensis KU_0333)
GGCAGTGGGCCCAGCGGGGGTGGGGCCGGCAGCGGCAGCAGAGGCACCGA
AGAAAAAGCTGGAGCTGAAGCTGTCGTCCTCGGCGTTCAGGGTGAAGCGG
GGCGAGGTGAGCCCGTCGCCGGCGGAGTTCAAGGCGCGGGAGAGGGAGGA
ATCCCAGGGGCAGTGGGCCCAGCGGGGGTGGGGCCGGCAGCGGCAGCAGA
GGCACCGAAGAAAAAGCTGGAGCTGAAGCTGTCGTCCTCGGCGTTCAGGG
TGAAGCGGGGCGAGGTGAGCCCGTCGCCGGCGGAGTTCAAGGCGCGGGAG
AGGGAGGAATCCCAGGACCTGCCCTTCTGCAGCGTGTGCACGGCGCCGTT
CGCGCTGCTGGTGCGGCGCCAGCGCTGCCAGGTCTGCGGGGAGAGCGTGT
GCGCGCAGTGCTCCTCAGACCGCCGACACGTCGAGACCTGCCCTTCTGCA
GCGTGTGCACGGCGCCGTTCGCGCTGCTGGTGCGGCGCCAGCGCTGCCAG
GTCTGCGGGGAGAGCGTGTGCGCGCAGTGCTCCTCAGACCGCCGACACGT
CGAGGGCCACAAGGGCCTCCAGCGCGTGTGCGACATCTGCATCGTAGAGG
GCCCCTGCGCCTTCGCCACCCCCACCATCCTCGAAGACCCGGGCCTCGTG
CCGCTCCACATCTCTGCCGCTTTCCAAGGCAACGAGGCCACAAGGGCCTC
CAGCGCGTGTGCGACATCTGCATCGTAGAGGGCCCCTGCGCCTTCGCCAC
CCCCACCATCCTCGAAGACCCGGGCCTCGTGCCGCTCCACATCTCTGCCG
CTTTCCAAGGCAACGA
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