mRNA_S-ischiensis_contig8.19611.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19611.1
Unique NamemRNA_S-ischiensis_contig8.19611.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: D8LEY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.590e-24
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L  +SLVRYRGMVQD Y+PE+FVGS++E+  ATG+R R   KY+D +  RPGF  +++GP A TM+RLPLFCVP
Sbjct:    5 LAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVP 78          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: A0A7S4D9L4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9L4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.250e-24
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            LP HSLV+Y GMVQD++D EFF G Y+EVN +TGE+  A+SKY++ +PP+   + DFE P + T+ERLPL+C P
Sbjct:   71 LPNHSLVKYIGMVQDIFDLEFFCGVYEEVNSSTGEKKLATSKYLESIPPKANIQPDFESPKSKTLERLPLYCTP 144          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.620e-24
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L  +SLVRYRGMVQD Y+PE+FVGS++E+  ATG+R R   KY+D +  RPGF  +++GP A TM+RLPLFCVP
Sbjct:   77 LAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVP 150          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: A0A7S0NDM0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDM0_9CRYP)

HSP 1 Score: 74.7 bits (182), Expect = 2.350e-14
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    7 PHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCV 219
            P +LVR+R MVQ+ Y+PE++VG Y+ V+  TGER +  S Y+D V P  G+  D  G +A T+ER+P+ C+
Sbjct:   36 PGTLVRFRCMVQNTYNPEWYVGEYELVSKTTGERKKRFSLYVDSVEPEQGYDIDMGGATAATLERIPMHCI 106          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: A0A5E4BL29_MARMO (Mini-chromosome maintenance complex-binding protein n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5E4BL29_MARMO)

HSP 1 Score: 70.1 bits (170), Expect = 1.580e-13
Identity = 32/74 (43.24%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L P+S V++R M+QDM+DPEF++G Y+ VN  T  R+    KY D     P    D   P +TT+ER   +CVP
Sbjct:   60 LKPNSFVKFRCMIQDMFDPEFYMGVYETVNQNTKARVLHFGKYRDIAECGPQQELDLNSPRSTTLERQTFYCVP 133          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: L1JB65_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JB65_GUITC)

HSP 1 Score: 73.2 bits (178), Expect = 1.980e-13
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    7 PHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCV 219
            P +LVR+R MVQ+ Y+PE++VG Y+ VN ATGER R  S Y D V    G   D    S+ T+ER+PL C+
Sbjct:   66 PGTLVRFRCMVQNTYNPEWYVGEYELVNKATGERKRRFSLYADSVESEEGCDVDMSSASSATLERIPLHCI 136          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: A0A061I8U5_CRIGR (Mini-chromosome maintenance complex-binding protein n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061I8U5_CRIGR)

HSP 1 Score: 69.7 bits (169), Expect = 3.080e-13
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L P+S V++R M+QDM+DPEF++G Y+ VN  T  R+    KY D     P    D   P +TT ER   +CVP
Sbjct:   66 LKPNSFVKFRCMIQDMFDPEFYMGVYETVNQTTKARVLHFGKYRDVAECGPQQELDLSSPRSTTAERQTFYCVP 139          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: UPI000C8658EC (mini-chromosome maintenance complex-binding protein isoform X1 n=2 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000C8658EC)

HSP 1 Score: 72.0 bits (175), Expect = 5.110e-13
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L P+S V++R M+QDM+DPEF++G Y+ VN AT  R+    KY D     P    D   P  TT+ER   +CVP
Sbjct:   44 LKPNSFVKFRCMIQDMFDPEFYMGVYETVNQATKARVLHFGKYRDVAECGPQQEVDLNSPRTTTLERQTFYCVP 117          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: UPI001B8883AA (mini-chromosome maintenance complex-binding protein-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8883AA)

HSP 1 Score: 71.6 bits (174), Expect = 6.980e-13
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCVP 222
            L P+S+V+YR M+QDMYDPEF++G Y+  ++ T E  R S KY D    +     D + P+  TM+R  L+CVP
Sbjct:   58 LRPNSVVKYRCMIQDMYDPEFYLGLYEVKDIKTQETHRLSGKYKDVADSQSHQEIDVDSPANVTMDRQTLYCVP 131          
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Match: UPI001ED8BAFB (mini-chromosome maintenance complex-binding protein n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BAFB)

HSP 1 Score: 70.9 bits (172), Expect = 1.300e-12
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   16 LVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPRPGFRQDFEGPSATTMERLPLFCV 219
            LVR+RGM+QDM++PEF++ SY+ +N  TGE+   S KY D  P +P     FE P+    ER   +CV
Sbjct:   51 LVRFRGMIQDMFNPEFYLSSYEVLNKVTGEKRIESGKYKDIAPIKPNEEITFESPNNVNSERQTFYCV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY8_ECTSI1.590e-2460.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D9L4_HETAK2.250e-2456.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KW72_9PHAE5.620e-2460.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0NDM0_9CRYP2.350e-1446.48Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A5E4BL29_MARMO1.580e-1343.24Mini-chromosome maintenance complex-binding protei... [more]
L1JB65_GUITC1.980e-1349.30Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A061I8U5_CRIGR3.080e-1343.24Mini-chromosome maintenance complex-binding protei... [more]
UPI000C8658EC5.110e-1344.59mini-chromosome maintenance complex-binding protei... [more]
UPI001B8883AA6.980e-1344.59mini-chromosome maintenance complex-binding protei... [more]
UPI001ED8BAFB1.300e-1245.59mini-chromosome maintenance complex-binding protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2534967..2535326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog2880.D8LEY8
Preferred nameMCMBP
KEGG koko:K06997
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576,GO:1902969,GO:1903047
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsKOG2545@1,KOG2545@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817292.1639488-CDS-S-ischiensis_contig8:2534966..25349881622817292.1639488-CDS-S-ischiensis_contig8:2534966..2534988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2534967..2534988 -
1695741001.367385-CDS-S-ischiensis_contig8:2534966..25349881695741001.367385-CDS-S-ischiensis_contig8:2534966..2534988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2534967..2534988 -
1622817292.1780703-CDS-S-ischiensis_contig8:2535126..25353261622817292.1780703-CDS-S-ischiensis_contig8:2535126..2535326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2535127..2535326 -
1695741001.3804145-CDS-S-ischiensis_contig8:2535126..25353261695741001.3804145-CDS-S-ischiensis_contig8:2535126..2535326Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2535127..2535326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19611.1prot_S-ischiensis_contig8.19611.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2534967..2535326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19611.1

>prot_S-ischiensis_contig8.19611.1 ID=prot_S-ischiensis_contig8.19611.1|Name=mRNA_S-ischiensis_contig8.19611.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=74bp
LPPHSLVRYRGMVQDMYDPEFFVGSYDEVNLATGERIRASSKYMDCVPPR
PGFRQDFEGPSATTMERLPLFCVP
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mRNA from alignment at S-ischiensis_contig8:2534967..2535326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19611.1 ID=mRNA_S-ischiensis_contig8.19611.1|Name=mRNA_S-ischiensis_contig8.19611.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=360bp|location=Sequence derived from alignment at S-ischiensis_contig8:2534967..2535326- (Schizocladia ischiensis KU_0333)
CTACCGCCTCATTCCCTCGTGCGGTACCGTGGTATGGTTCAGGACATGTA CGACCCGGAGTTTTTCGTTGGGTCTTACGATGAGGTGAACCTCGCCACCG GGGAGAGGATCCGCGCCAGCAGCAAGTACATGGACTGTGTGCCGCCTCGA CCGGGATTCAGGCAGGATTTCGAGGGCCCTTCTGCAACGACCATGGAACG GTGCGTGCAACATCTGATTTTTGTACTCGAGTACGGTGTCTTCCCCGGCA CAAATCGTGGCGGTACACCCTCTCCACCTCGTATTCTGAAGCCTTCCCCC TGTGCCACGCGTGCCTTCCGTTCCAACCGCGGCTGCAGTCTTCCACTGTT CTGTGTGCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2534967..2535326-

>mRNA_S-ischiensis_contig8.19611.1 ID=mRNA_S-ischiensis_contig8.19611.1|Name=mRNA_S-ischiensis_contig8.19611.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=444bp|location=Sequence derived from alignment at S-ischiensis_contig8:2534967..2535326- (Schizocladia ischiensis KU_0333)
CTACCGCCTCATTCCCTCGTGCGGTACCGTGGTATGGTTCAGGACATGTA
CGACCCGGAGTTTTTCGTTGGGTCTTACGATGAGGTGAACCTCGCCACCG
GGGAGAGGATCCGCGCCAGCAGCAAGTACATGGACTGTGTGCCGCCTCGA
CCGGGATTCAGGCAGGATTTCGAGGGCCCTTCTGCAACGACCATGGAACG
CTACCGCCTCATTCCCTCGTGCGGTACCGTGGTATGGTTCAGGACATGTA
CGACCCGGAGTTTTTCGTTGGGTCTTACGATGAGGTGAACCTCGCCACCG
GGGAGAGGATCCGCGCCAGCAGCAAGTACATGGACTGTGTGCCGCCTCGA
CCGGGATTCAGGCAGGATTTCGAGGGCCCTTCTGCAACGACCATGGAACG
TCTTCCACTGTTCTGTGTGCCATCTTCCACTGTTCTGTGTGCCA
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