mRNA_S-ischiensis_contig8.19597.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19597.1
Unique NamemRNA_S-ischiensis_contig8.19597.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: D7FTZ3_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.350e-30
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:  418 KVGLPKFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLIPSADG 723
            +VGLP   RRF+GKPIL+Y KES++VK PGY+ELD+N H FSY+GRKGL+V + KW  AV R+GFL+EG+ DEE PE +LGC +  GLD   L  L  SADG
Sbjct: 1113 EVGLPSIARRFSGKPILLYGKESSMVKGPGYVELDLNAHAFSYVGRKGLYVTLEKWKRAVFRIGFLLEGRTDEEQPEHILGCGVFHGLDLDVLSELSLSADG 1214
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A2R5GG71_9STRA (Protein ENHANCED DISEASE RESISTANCE 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG71_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.380e-12
Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:  418 KVGLPKFVRRFNGKPILVYEKESTVVKAP-------GYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLD 684
            +VG+P   + +NGKP +V+ K  T+   P        Y+E D+N H F+Y+ RK L  +I + P   LR  F+++G+ DEELPEQ+  C+ +  LD
Sbjct:  332 EVGVPSMFQSYNGKPAIVF-KTGTIFSGPIDGNVQDHYVEFDINVHEFAYLARKALHSMIDRVPQMRLRCAFVLQGEDDEELPEQVFACSALHNLD 426
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A1D6GK75_MAIZE (DUF1336 domain containing protein expressed n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6GK75_MAIZE)

HSP 1 Score: 72.0 bits (175), Expect = 2.200e-11
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  397 NTTTTPCKVGLPKFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLIPSA 717
            N    P      K +  +N KP+L    +        Y E+D++ HRFSY+ RKG    + +  A VL +G  ++G + EELPEQ+L C  + G+D  K Q L+  A
Sbjct:   63 NLEDLPLSAAERKLMHAYNEKPVLS-RPQHLFYLGDNYFEIDIDMHRFSYISRKGFETFLDRLKACVLDVGLTIQGNKAEELPEQILCCVRLNGIDYTKYQPLLTHA 168
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A3M6VH26_9STRA (PH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VH26_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.690e-11
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  433 KFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLI 708
            + +  +NG+PIL    +    +  GY E+DVN H F+Y+ RKGL  V       V+  GF++EGQ D ELPEQMLGC  +  +D  K   L+
Sbjct:  507 RLLETYNGQPILT-RPQHKFYRGDGYFEVDVNAHEFNYIARKGLVGVSTHACNMVVDFGFVLEGQEDHELPEQMLGCVRLCKVDVRKAPRLL 597
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A3L6ESQ8_MAIZE (EDR2_C domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6ESQ8_MAIZE)

HSP 1 Score: 72.0 bits (175), Expect = 6.600e-11
Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1 
Query:  397 NTTTTPCKVGLPKFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLIPSA 717
            N    P      K +  +N KP+L    +        Y E+D++ HRFSY+ RKG    + +  A VL +G  ++G + EELPEQ+L C  + G+D  K Q L+  A
Sbjct:  122 NLEDLPLSAAERKLMHAYNEKPVLS-RPQHLFYLGDNYFEIDIDMHRFSYISRKGFETFLDRLKACVLDVGLTIQGNKAEELPEQILCCVRLNGIDYTKYQPLLTHA 227
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: D0MVJ7_PHYIT (EDR2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0MVJ7_PHYIT)

HSP 1 Score: 68.6 bits (166), Expect = 1.240e-10
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:  433 KFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLD 684
            + +  +NG+PIL    +    +  GY E+DV+ H F+Y+ RKGL  V       +L  GF++EGQ D ELPEQ+LGC  +  +D
Sbjct:   31 RLLETYNGQPILT-RPQHRFYRGDGYFEVDVDAHDFNYIARKGLVGVSTHACNMILDFGFVLEGQEDNELPEQILGCVRLCKVD 113
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: K4A8C5_SETIT (EDR2_C domain-containing protein n=27 Tax=PACMAD clade TaxID=147370 RepID=K4A8C5_SETIT)

HSP 1 Score: 72.4 bits (176), Expect = 3.250e-10
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:  397 NTTTTPCKVGLPKFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLI 708
            N    P      K +  +N KP+L   +    +    Y E+D++ HRFSY+ RKG    + +  A VL +G  ++G + EELPEQ+L C  + G+D  K Q L+
Sbjct:  423 NLEDLPLSAAERKLMHAYNEKPVLSRPQHEFYL-GDNYFEIDIDMHRFSYISRKGFETFLDRLKACVLDVGLTIQGNKAEELPEQILCCVRLNGIDYTKYQQLL 525
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A0A9JGR1_ARUDO (EDR2_C domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JGR1_ARUDO)

HSP 1 Score: 68.6 bits (166), Expect = 3.460e-10
Identity = 34/104 (32.69%), Postives = 53/104 (50.96%), Query Frame = 1 
Query:  397 NTTTTPCKVGLPKFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLI 708
            N    P      K +  +N KP+L   +    +    Y E+D++ HRFSY+ RKG    + +     L +G  ++G + EELPEQ+L C  + G+D  K Q L+
Sbjct:   59 NLEDLPLSAAERKLMHAYNEKPVLSRPQHEFFL-GDNYFEIDIDMHRFSYISRKGFETFLDRLKVCFLDVGLTIQGNKAEELPEQILCCVRLNGIDYTKYQRLM 161
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A1Q3D2H4_CEPFO (DUF1336 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D2H4_CEPFO)

HSP 1 Score: 71.6 bits (174), Expect = 5.910e-10
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:  433 KFVRRFNGKPILVYEKESTVVKAPGYLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLIPSADGTSVTL 738
            K ++ +N KP+L    +        YLE+D++ HRFSY+ RKG    + +    +L +G  ++G + EELPEQ+L C  +  +D +K  H + S+ GT  TL
Sbjct:  445 KIMQAYNEKPVLS-RPQHEFYSGENYLEIDIDMHRFSYISRKGFEAFLDRLKLCILDVGLTIQGNKPEELPEQILCCIRLNSIDYMKY-HQLGSSQGTLDTL 544
[Close]
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Match: A0A835ZBF7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.640e-10
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  424 GLPKFVRRFNGKPILVYEKESTVVKAPG---------YLELDVNTHRFSYMGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKLQHLIP 711
            GLP  V + NG+P L+  K  TV    G         YLELD N   + ++ R+ L  ++P+ P   L +GF++EG+ D ELPEQ+LGC  + G+D  +   L P
Sbjct:  348 GLPGPVVQNNGRPTLI-TKSGTVTSGVGRVRGGGSARYLELDCNVRHWCFLARRALRHLLPRAPRVHLSIGFVIEGRADAELPEQILGCCELGGVDPDRAVELAP 451
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTZ3_ECTSI3.350e-3060.78EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A2R5GG71_9STRA8.380e-1238.54Protein ENHANCED DISEASE RESISTANCE 2 n=1 Tax=Hond... [more]
A0A1D6GK75_MAIZE2.200e-1134.58DUF1336 domain containing protein expressed n=3 Ta... [more]
A0A3M6VH26_9STRA4.690e-1141.30PH domain-containing protein n=1 Tax=Peronospora e... [more]
A0A3L6ESQ8_MAIZE6.600e-1134.58EDR2_C domain-containing protein n=1 Tax=Zea mays ... [more]
D0MVJ7_PHYIT1.240e-1040.48EDR2_C domain-containing protein n=2 Tax=Phytophth... [more]
K4A8C5_SETIT3.250e-1034.62EDR2_C domain-containing protein n=27 Tax=PACMAD c... [more]
A0A0A9JGR1_ARUDO3.460e-1032.69EDR2_C domain-containing protein n=1 Tax=Arundo do... [more]
A0A1Q3D2H4_CEPFO5.910e-1035.29DUF1336 domain-containing protein n=1 Tax=Cephalot... [more]
A0A835ZBF7_9STRA6.640e-1038.10EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2404974..2409182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue5.6e-10
Seed eggNOG ortholog2880.D7FTZ3
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1106
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19597.1prot_S-ischiensis_contig8.19597.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2404974..2406668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.9154358-CDS-S-ischiensis_contig8:2404973..24054011622817260.9154358-CDS-S-ischiensis_contig8:2404973..2405401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2404974..2405401 -
1695740977.4244862-CDS-S-ischiensis_contig8:2404973..24054011695740977.4244862-CDS-S-ischiensis_contig8:2404973..2405401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2404974..2405401 -
1622817260.933804-CDS-S-ischiensis_contig8:2406538..24066681622817260.933804-CDS-S-ischiensis_contig8:2406538..2406668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2406539..2406668 -
1695740977.4401445-CDS-S-ischiensis_contig8:2406538..24066681695740977.4401445-CDS-S-ischiensis_contig8:2406538..2406668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2406539..2406668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817260.9443686-UTR-S-ischiensis_contig8:2406668..24066781622817260.9443686-UTR-S-ischiensis_contig8:2406668..2406678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2406669..2406678 -
1695740977.4524772-UTR-S-ischiensis_contig8:2406668..24066781695740977.4524772-UTR-S-ischiensis_contig8:2406668..2406678Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2406669..2406678 -
1622817260.9546065-UTR-S-ischiensis_contig8:2408646..24091821622817260.9546065-UTR-S-ischiensis_contig8:2408646..2409182Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2408647..2409182 -
1695740977.4642587-UTR-S-ischiensis_contig8:2408646..24091821695740977.4642587-UTR-S-ischiensis_contig8:2408646..2409182Schizocladia ischiensis KU_0333UTRS-ischiensis_contig8 2408647..2409182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19597.1

>prot_S-ischiensis_contig8.19597.1 ID=prot_S-ischiensis_contig8.19597.1|Name=mRNA_S-ischiensis_contig8.19597.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp
MGRKGLFVVIPKWPAAVLRLGFLVEGQRDEELPEQMLGCAMVKGLDALKL
QHLIPSADGTSVTLARGPGDPAAPLGQANPRAAAGGAATATSASASLSSR
FGGTGTGTGAGRRAGGRGGLALATPTAWRLGTPAAMVVARVAAAHLAYLL
FGGMFHGVFAPLALPPVVGWLLVQACVWHMGVVAGT
back to top

mRNA from alignment at S-ischiensis_contig8:2404974..2409182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19597.1 ID=mRNA_S-ischiensis_contig8.19597.1|Name=mRNA_S-ischiensis_contig8.19597.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4209bp|location=Sequence derived from alignment at S-ischiensis_contig8:2404974..2409182- (Schizocladia ischiensis KU_0333)
GGGGAGGGGAGGGGAGCAAGCGAGGTCCGTAGCCCTGGCAATACGTAAAC
CGGAGGGGCGAGGGAAAGCGAGCAAGCCAGGCCATGATCGACAAGCACCG
GTACCGAACCCGATAAGTTAGATGCCTTGCCAATACCCCACTCTACTTCC
CAAGGGTTTGCCCTGTCCACGTAACACTCAAGCACCCGCCCGCTTTCCCC
GTGCCCCGACAAACGAACGTGAAAACAAACACAACCACAACGCCTCGCAA
GGTGGGCCTGCCCAAGTTTGTCCAGCGCTTCAACGGGAAGCCCGAAAGAT
GCCTTGCCGATACCCCACTCTACTTCCCAAGGGTTTGCCCTGCCCACGTA
GCACCCAAGCACCCGCCCGCCCGCTTTCCCCGGGCGTGCCCCGACAAACA
CGACCACAACGCCTTGCAAGGTTGGCCTGCCCAAGTTCGTGCGGCGCTTC
AACGGGAAGCCCATCCTGGTGTACGAGAAGGAGTCCACCGTGGTCAAAGC
CCCGGGATACTTGGAGCTGGACGTGAACACACACAGGTATTGCGTTTACG
TTTAACTTATCGTAACGTGCTGTCATGTGTGTTTACATTTGTCGTACTGT
GCCGTCATGTGTGTTTTACATTTACTAAAGACGAGGATCGTTCGGGTCCA
GGGCATGCACAGAGACGTGAGCACACACACAGTATCCAAGCACCATGTGA
GTACATATAGTATCGTAGCGTGTTTTCATGTGTGCCGTGCGTGGGCTTGC
CGCGGTAGTCCCGGCGCCATTGACGACGTGCCTCGACCGAGACGGAGTAG
GGTGTTGCTCTGTGCGCTCCCATTGCGGTAGGCTTGCCGTTAGTCCAGAG
ACAATTGACGATGCACCTCGACTCGACCGAGACGGAGCAGGCCCCCTCCC
TCTCCCCCGGCAGGGCCAGGACGGAGCAGGGTCGTACTTATCTATACGCA
GTACAAGCAGTGTGTCAAGTACGTGACCACGATGCGAGTACTGTACGTGC
ATTGCATGTACGAGTACAGCAAGGTGGACCTTACGACTTACGGGATAGGA
CACTTTTCGAATAATATATCGGGTGCTGCTACGAATCAGACGTCAAATGA
TAGTGCGATTGAAAGCTCTGGTCGAGTTCTTTCGATCGGTGCAGTATTAA
CGCCGGGTTTTGAGTTGCTATCGAGAAATGCTTATCAGAAACCTCCGGGC
AGAAATGGCTGATTTTGCTTTGAGGACCAATATGTCTACAAGAAACGAAA
ACGCAAAGCGTCTGATTAGCCCAATATGGAGCTGTCGACCCGAGCTTTCC
ATCGCGCTATCGCTTGACGTCTGATTCATAGCAGCGCCCGACCTACACTT
TCAACAAGCCGACCTACTCTCAGTTGGGCCATATCACTGGCTAAATGAGG
CAAGAGAGTGTACGCGCAGTTGGGAGCGAACGACGACGAATTGGAGTAAA
TCGAAACCACCGTGTGATTCCTCTCGATGAGACGAGTCGATCGGGCTTTT
CAAAATATATCTCGAAAATTGTATACGACTTGGTTGTAGTACTGAAATTG
GCCGTCAACGGCCAGTCCAGGCCAACCCGGCCAATATGTTGCCACATGAT
GCCAGAAGCGAAAAATGTTACTAAGCAATAACGTAGGGCTCGGCCGGGCG
ATTACAACGAGCCATCGCCTGCCACGCAATTCGCTTTCGTTCGAAAGTTA
TCTCGTCAAAAAGGCGCATCCCGTACGTGATAAGTTCCACCTTAAATACT
TCGTATAGGTACTTCCGGGAGTACTGAGCCTACGCAAGGAAGTACCGTGC
GCAGTTCGAGCTCAGTAAGTACCCAACTGCATTACGTGTAGCTCCCAACC
AACCCTCCAAAACAAGTGTGAGTACGTCGAAGTACACCAGTCCCGTACAA
GAGAGCCCTGTGTTTGTCTACTGCTTAACGTGTGTGTAATCTACTCTACT
CCAAAGTACTTCGAAGTACATCCAAGTACACGTCGTAGTAATGCCAATGT
GTCTACTGTACTGCTTTTGACCGTTCGATACCTACTACCTGAGCTTCCTT
CACTTCCCAAGCATCGCTTTGTGGTTTGTTTCACGACATCCCCCCCTTGT
TCTTAGTTCCTTGGTGTGATCATCACTACTGTAAGAACACTCAATTTTTT
AATGGGACAACTACAATGCGAGAACAGTCAATATCACACACGTGCGATTG
CGAGGTACTTCTAAGTACAATTTATGTGAATCACCACAACCAACCCTGTC
ATATACTCAGGTTCTCCTACATGGGCCGTAGGGGCCTGTTTAATACTTTT
GACTGTTCGTTACCTACTTGAGCTTCCTTCACTTCCCAAACATTGCTTGT
ACTTGTGGTTTGTTTCACGACACCCGACCCTGTCGCATACGCAGGTTCTC
CGACATGGGTGCTTTTGACCGTTCGATACCTACTTGAGCTTCCTTCAGTG
CCCAGGCATCACTTGTAGTTTGTTTCACGACACCCAACCCTGTGGTATAC
GCAGGTTCTCCTACATGGGCCGCAAGGGGCTGTTTGTGGTCATCCCCAAG
TGGCCGGCGGCCGTGTTGCGCCTGGGCTTCCTTGTGGAAGGCCAGCGGGA
CGAGGAGCTACCCGAGCAGATGCTGGGCTGCGCCATGGTCAAAGGTGTGC
ACGAAGATTACAGTCACTACACAGTACTTCGAAGTATGTATGTACAGACA
AGTGCTTCGAAGTAGAATACTCGCACCTACCAGTGCTTGCCGTAGTCCCG
AGACCGTTGACCCCTATAGCACCTCGACCGCCTATGGACGGAGCAGTGTA
CACGAAGATTACAATCACTAAGTACATAGTAGTAGTAGTAGTAGTATGTG
CAGACGAGTAGAATACTCACACCTAGCAGTGCTTGCCGTGGTCCCGAGAC
CGTTGACCCCTATAGTGCCTCGACCGCCTACTCCGTAGGTATGGATGGAG
CAGACCCCCTTCCCCCCACGGCAGAGCCATGGTAGGCGTAGGAGGGTGGG
GGCACAATTGCCACAATGAAGTACTCGTACAGTAGTGCAGTACGAGTGCA
TCGTACAGCACAGTAGGTACGAGTAGATACATGCACTGTGCTGTACTGTA
CTTTACTTTTTTGGTTGCCGCCTGACATGGTGTAGGGGTTAATTGCAGAC
TAGATGCTGCAACAGTAAAAGGACAAGTACTGTATTGTACTGTGCTCGTG
CTTGTGGTACGTTTGCCGCTGTCCTGAGATTCACGGGCTGCATGCGTCGA
CCGCCTCCTCTCGCCATACACTCTGCAGCTTCGCTCTACAGTACAGTAGT
ACAGTAGAGAGCTAGTGTACAGCACGTAGAGTACAGTAGTACTTACGAGC
AGAGACTTTGGTATGACTGTACTGACTTTAGTAGAGCTCTGCAGTACCTC
CTCGCAAGTCGCTTTGAAGTACCGTATGACTGCACGAGCACATTCCCAAA
GACATACACACACGCCACTCACAAAAATGACTCGCACACGCGCACGCGCA
CATGCGTGCATGTCTCTTGATTCGTGCATGTGTACTGAGTAGACACACAC
ACACGTACACATGCACCTCGTACACACCCAGAGACACAAACAACACACGC
ACACCAGTGCTTGAAGTACTATGTAGTACTTCCAAGTATATATATATGCT
TCGAAGTATGTACTTACCTTGTGCTTGCCGTAGGTAGTCCCGAGACCGTT
GACCACACGCAGCACACCACAAGTACCTATACACGAATCACGCACACACA
CACACACACACACGACAAACACCCATCGCAGGCCTGGACGCCCTCAAGCT
GCAGCACCTCATCCCCAGCGCAGACGGCACCAGTGTCACGCTCGCCCGCG
GCCCCGGAGACCCCGCAGCCCCGCTTGGCCAGGCAAACCCCCGCGCCGCC
GCCGGTGGCGCCGCCACCGCCACATCCGCCAGCGCGTCACTCTCATCGCG
TTTTGGCGGCACCGGCACCGGCACTGGGGCCGGCCGCCGGGCCGGCGGCA
GGGGCGGCTTGGCCCTGGCCACGCCCACAGCATGGCGGCTCGGCACCCCG
GCGGCAATGGTGGTTGCCCGGGTGGCGGCAGCTCACCTTGCCTACCTCCT
TTTCGGGGGCATGTTCCACGGCGTTTTCGCGCCGCTGGCGCTGCCGCCGG
TGGTGGGGTGGCTCCTTGTACAGGCGTGTGTGTGGCACATGGGGGTGGTG
GCCGGCACC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig8:2404974..2409182-

>mRNA_S-ischiensis_contig8.19597.1 ID=mRNA_S-ischiensis_contig8.19597.1|Name=mRNA_S-ischiensis_contig8.19597.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig8:2404974..2409182- (Schizocladia ischiensis KU_0333)
ATGGGCCGCAAGGGGCTGTTTGTGGTCATCCCCAAGTGGCCGGCGGCCGT
GTTGCGCCTGGGCTTCCTTGTGGAAGGCCAGCGGGACGAGGAGCTACCCG
AGCAGATGCTGGGCTGCGCCATGGTCAAAGATGGGCCGCAAGGGGCTGTT
TGTGGTCATCCCCAAGTGGCCGGCGGCCGTGTTGCGCCTGGGCTTCCTTG
TGGAAGGCCAGCGGGACGAGGAGCTACCCGAGCAGATGCTGGGCTGCGCC
ATGGTCAAAGGCCTGGACGCCCTCAAGCTGCAGCACCTCATCCCCAGCGC
AGACGGCACCAGTGTCACGCTCGCCCGCGGCCCCGGAGACCCCGCAGCCC
CGCTTGGCCAGGCAAACCCCCGCGCCGCCGCCGGTGGCGCCGCCACCGCC
ACATCCGCCAGCGCGTCACTCTCATCGCGTTTTGGCGGCACCGGCACCGG
CACTGGGGCCGGCCGCCGGGCCGGCGGCAGGGGCGGCTTGGCCCTGGCCA
CGCCCACAGCATGGCGGCTCGGCACCCCGGCGGCAATGGTGGTTGCCCGG
GTGGCGGCAGCTCACCTTGCCTACCTCCTTTTCGGGGGCATGTTCCACGG
CGTTTTCGCGCCGCTGGCGCTGCCGCCGGTGGTGGGGTGGCTCCTTGTAC
AGGCGTGTGTGTGGCACATGGGGGTGGTGGCCGGCACCGCCTGGACGCCC
TCAAGCTGCAGCACCTCATCCCCAGCGCAGACGGCACCAGTGTCACGCTC
GCCCGCGGCCCCGGAGACCCCGCAGCCCCGCTTGGCCAGGCAAACCCCCG
CGCCGCCGCCGGTGGCGCCGCCACCGCCACATCCGCCAGCGCGTCACTCT
CATCGCGTTTTGGCGGCACCGGCACCGGCACTGGGGCCGGCCGCCGGGCC
GGCGGCAGGGGCGGCTTGGCCCTGGCCACGCCCACAGCATGGCGGCTCGG
CACCCCGGCGGCAATGGTGGTTGCCCGGGTGGCGGCAGCTCACCTTGCCT
ACCTCCTTTTCGGGGGCATGTTCCACGGCGTTTTCGCGCCGCTGGCGCTG
CCGCCGGTGGTGGGGTGGCTCCTTGTACAGGCGTGTGTGTGGCACATGGG
GGTGGTGGCCGGCACC
back to top