mRNA_S-ischiensis_contig8.19594.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig8.19594.1
Unique NamemRNA_S-ischiensis_contig8.19594.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig8.19594.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 7.730e-7
Identity = 37/93 (39.78%), Postives = 45/93 (48.39%), Query Frame = 3 
Query:   90 LVRLLAALRGRVASALYQAGERLLRCADADHRDLRDGRPYYRPPHLTGAERASFSAVLSSCCRGGGFXXXXXXXGGLRPLAVAYLRAHESVRA 368
            L RL+ +LR  V   LY  GERLLRC +ADHR++      Y P  +T AER  F   L    RG            LR   + +LR  ES RA
Sbjct:  602 LPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHG--KLYHPVPITPAEREQFHVCLEDAARGR-----------LRRAVLTFLRVQESHRA 681
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig8.19594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L397_9PHAE7.730e-739.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig8contigS-ischiensis_contig8:2397616..2398012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817267.8438337-CDS-S-ischiensis_contig8:2397615..23980111622817267.8438337-CDS-S-ischiensis_contig8:2397615..2398011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2397616..2398011 +
1695740981.7021534-CDS-S-ischiensis_contig8:2397615..23980111695740981.7021534-CDS-S-ischiensis_contig8:2397615..2398011Schizocladia ischiensis KU_0333CDSS-ischiensis_contig8 2397616..2398011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig8.19594.1prot_S-ischiensis_contig8.19594.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig8 2397616..2398011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig8.19594.1

>prot_S-ischiensis_contig8.19594.1 ID=prot_S-ischiensis_contig8.19594.1|Name=mRNA_S-ischiensis_contig8.19594.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=132bp
AAARWPRSWRRWRRPSPWRVWAALSAGPGPSSGCWRPSGAGWRLRSTRPG
SGCSAAPMPTTATCATAAPTTAPRTSRAPSARASRPCSPLAAGGAVSGAV
SAAAAGSAPSRWPTSGRTRACGRFSLTTAEEA
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mRNA from alignment at S-ischiensis_contig8:2397616..2398012+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig8.19594.1 ID=mRNA_S-ischiensis_contig8.19594.1|Name=mRNA_S-ischiensis_contig8.19594.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=397bp|location=Sequence derived from alignment at S-ischiensis_contig8:2397616..2398012+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGCGCTGGCCGCGGAGCTGGCGGCGCTGGAGGCGTCCCTCGCC
TTGGAGGGTGTGGGCAGCGTTGTCGGCGGGGCCGGGCCCCTCGTCCGGCT
GCTGGCGGCCCTCCGGGGCCGGGTGGCGTCTGCGCTCTACCAGGCCGGGG
AGCGGCTGCTCCGCTGCGCCGATGCCGACCACCGCGACCTGCGCGACGGC
CGCCCCTACTACCGCCCCCCGCACCTCACGGGCGCCGAGCGCGCGAGCTT
CTCGGCCGTGCTCTCCTCTTGCTGCCGGGGGGGCGGTTTCGGGGGCGGTT
TCGGCGGCGGCGGCGGGCTCCGCCCCCTCGCGGTGGCCTACCTCCGGGCG
CACGAGAGCGTGCGGGCGCTTTTCGCTCACTACAGCGGAGGAGGCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig8:2397616..2398012+

>mRNA_S-ischiensis_contig8.19594.1 ID=mRNA_S-ischiensis_contig8.19594.1|Name=mRNA_S-ischiensis_contig8.19594.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=792bp|location=Sequence derived from alignment at S-ischiensis_contig8:2397616..2398012+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGCGCTGGCCGCGGAGCTGGCGGCGCTGGAGGCGTCCCTCGCC
TTGGAGGGTGTGGGCAGCGTTGTCGGCGGGGCCGGGCCCCTCGTCCGGCT
GCTGGCGGCCCTCCGGGGCCGGGTGGCGTCTGCGCTCTACCAGGCCGGGG
AGCGGCTGCTCCGCTGCGCCGATGCCGACCACCGCGACCTGCGCGACGGC
CGCCCCTACTACCGCCCCCCGCACCTCACGGGCGCCGAGCGCGCGAGCTT
CTCGGCCGTGCTCTCCTCTTGCTGCCGGGGGGGCGGTTTCGGGGGCGGTT
TCGGCGGCGGCGGCGGGCTCCGCCCCCTCGCGGTGGCCTACCTCCGGGCG
CACGAGAGCGTGCGGGCGCTTTTCGCTCACTACAGCGGAGGAGGCGGCGG
CGGCGCGCTGGCCGCGGAGCTGGCGGCGCTGGAGGCGTCCCTCGCCTTGG
AGGGTGTGGGCAGCGTTGTCGGCGGGGCCGGGCCCCTCGTCCGGCTGCTG
GCGGCCCTCCGGGGCCGGGTGGCGTCTGCGCTCTACCAGGCCGGGGAGCG
GCTGCTCCGCTGCGCCGATGCCGACCACCGCGACCTGCGCGACGGCCGCC
CCTACTACCGCCCCCCGCACCTCACGGGCGCCGAGCGCGCGAGCTTCTCG
GCCGTGCTCTCCTCTTGCTGCCGGGGGGGCGGTTTCGGGGGCGGTTTCGG
CGGCGGCGGCGGGCTCCGCCCCCTCGCGGTGGCCTACCTCCGGGCGCACG
AGAGCGTGCGGGCGCTTTTCGCTCACTACAGCGGAGGAGGCG
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